Wall clock time and date at job start Tue Mar 31 2020 18:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00247 * 2 1 4 4 H 1.48497 * 109.47287 * 239.99947 * 3 2 1 5 5 H 1.48504 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47336 * 119.99921 * 3 2 1 7 7 C 1.37882 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99870 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.34766 * 120.00184 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00041 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00405 * 180.02562 * 11 10 9 14 14 N 1.46493 * 109.47458 * 179.97438 * 13 11 10 15 15 C 1.39962 * 120.00292 * 179.97438 * 14 13 11 16 16 C 1.38721 * 120.08033 * 0.02562 * 15 14 13 17 17 C 1.38319 * 119.96794 * 179.97438 * 16 15 14 18 18 Cl 1.73604 * 119.93139 * 179.97438 * 17 16 15 19 19 C 1.38358 * 120.13453 * 0.02562 * 17 16 15 20 20 C 1.38282 * 120.16657 * 0.27436 * 19 17 16 21 21 C 1.38493 * 120.02949 * 359.45193 * 20 19 17 22 22 O 1.36035 * 120.06790 * 180.27967 * 21 20 19 23 23 C 1.42893 * 116.99738 * 0.26319 * 22 21 20 24 24 F 1.39895 * 109.47818 * 300.00444 * 23 22 21 25 25 F 1.39904 * 109.47026 * 60.00724 * 23 22 21 26 26 H 0.97008 * 120.00429 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46976 * 60.00361 * 9 7 2 28 28 H 1.08989 * 109.47455 * 299.99723 * 9 7 2 29 29 H 0.97007 * 119.99783 * 0.02562 * 10 9 7 30 30 H 1.09004 * 109.46746 * 59.99566 * 13 11 10 31 31 H 1.08994 * 109.46812 * 300.00423 * 13 11 10 32 32 H 0.97002 * 120.00260 * 0.02562 * 14 13 11 33 33 H 1.08000 * 120.01604 * 0.02562 * 16 15 14 34 34 H 1.08002 * 119.91381 * 179.97438 * 19 17 16 35 35 H 1.07994 * 119.98623 * 179.69886 * 20 19 17 36 36 H 1.09009 * 109.46787 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7537 -4.8833 0.0019 12 8 0.5613 -5.1050 0.0029 13 6 2.7329 -6.0289 0.0022 14 7 2.0004 -7.2975 0.0032 15 6 2.7002 -8.5097 0.0031 16 6 4.0874 -8.5117 0.0027 17 6 4.7765 -9.7110 0.0031 18 17 6.5126 -9.7124 0.0018 19 6 4.0851 -10.9094 0.0035 20 6 2.7023 -10.9139 -0.0022 21 6 2.0053 -9.7171 0.0030 22 8 0.6450 -9.7207 0.0031 23 6 -0.0004 -10.9956 0.0035 24 9 0.3773 -11.7099 -1.1385 25 9 0.3774 -11.7091 1.1460 26 1 -0.4851 0.8401 0.0004 27 1 0.6239 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 3.1566 -3.4355 0.0010 30 1 3.3596 -5.9708 0.8922 31 1 3.3595 -5.9714 -0.8877 32 1 1.0304 -7.2976 0.0032 33 1 4.6290 -7.5773 0.0027 34 1 4.6268 -11.8438 0.0035 35 1 2.1656 -11.8510 -0.0068 36 1 -1.0814 -10.8555 0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819077853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:30 Heat of formation + Delta-G solvation = -163.484717 kcal Electronic energy + Delta-G solvation = -25379.023366 eV Core-core repulsion = 20945.719760 eV Total energy + Delta-G solvation = -4433.303607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.64438 -47.62917 -40.48866 -39.09837 -37.91002 -36.61908 -35.30154 -34.30162 -32.46273 -30.48248 -30.28289 -27.91805 -26.36402 -26.10515 -23.10110 -22.51509 -21.97943 -19.99327 -19.34359 -18.68499 -18.20138 -17.71724 -17.03699 -16.40588 -16.00844 -15.62647 -15.52377 -15.17685 -14.89927 -14.83841 -14.49785 -14.30599 -14.13895 -13.97466 -13.68248 -13.39900 -13.36636 -13.06676 -13.04671 -12.61728 -12.16368 -12.02890 -11.87609 -11.61162 -11.38588 -11.11002 -11.05845 -10.92798 -10.39621 -10.28674 -9.50773 -9.34053 -8.83725 -8.82408 -8.06136 -7.51806 -6.23601 -4.31348 0.89491 1.18305 1.92111 2.27502 3.09487 3.09578 3.17563 3.21303 3.26681 3.28018 3.37589 3.97041 4.01924 4.29995 4.34380 4.48209 4.69030 4.93857 5.05298 5.12748 5.17499 5.27871 5.34564 5.39565 5.44543 5.87845 6.01602 6.16858 6.48315 7.02680 7.18565 7.24165 7.40159 7.55179 7.64627 7.87802 8.43690 8.64156 8.88895 9.35270 10.86469 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.002475 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.869682 B =11311.293012 C =13151.066828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.705 5.705 11 C 0.494 3.506 12 O -0.551 6.551 13 C 0.100 3.900 14 N -0.719 5.719 15 C 0.234 3.766 16 C -0.171 4.171 17 C -0.003 4.003 18 Cl -0.070 7.070 19 C -0.140 4.140 20 C -0.129 4.129 21 C 0.032 3.968 22 O -0.317 6.317 23 C 0.414 3.586 24 F -0.200 7.200 25 F -0.200 7.200 26 H 0.267 0.733 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.394 0.606 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.420 0.580 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 -23.886 0.002 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.353 5.353 11 C 0.277 3.723 12 O -0.430 6.430 13 C -0.029 4.029 14 N -0.352 5.352 15 C 0.127 3.873 16 C -0.196 4.196 17 C -0.030 4.030 18 Cl -0.041 7.041 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.015 4.015 22 O -0.235 6.235 23 C 0.323 3.677 24 F -0.182 7.182 25 F -0.182 7.182 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.227 0.773 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.260 0.740 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.916 -23.538 0.002 24.270 hybrid contribution 0.779 0.724 -0.001 1.064 sum 6.695 -22.814 0.002 23.776 Atomic orbital electron populations 1.69956 1.06145 1.27567 1.48543 1.24951 0.94927 0.99515 0.94550 0.86452 0.79416 0.82176 0.78752 1.20008 1.21032 1.20003 1.21169 0.93281 0.90343 1.53717 0.91818 1.19160 0.88213 0.81743 0.97927 1.46415 1.11501 1.05799 1.71557 1.20259 0.89322 0.84625 0.78074 1.90667 1.16629 1.84498 1.51250 1.21200 0.94827 0.83495 1.03333 1.44385 1.09691 1.00705 1.80376 1.16892 0.90153 0.83898 0.96308 1.20332 0.90959 0.98112 1.10149 1.20519 0.84339 0.94365 1.03803 1.98368 1.09921 1.98952 1.96896 1.20531 0.92976 0.96942 1.05700 1.21183 0.94845 0.96354 1.02489 1.18262 0.81202 0.93281 1.08793 1.86604 1.18195 1.29388 1.89276 1.23355 0.97425 0.75176 0.71715 1.93092 1.93419 1.79484 1.52180 1.93096 1.93425 1.79520 1.52130 0.92291 0.95338 0.95333 0.77343 0.89282 0.89281 0.74042 0.83878 0.84790 0.84260 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.28 55.43 0.74 -24.76 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.55 -14.32 9.28 -34.44 -0.32 -14.64 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 9 C 0.25 6.34 5.43 -5.19 -0.03 6.31 16 10 N -0.70 -13.69 5.55 -61.48 -0.34 -14.03 16 11 C 0.49 8.99 7.90 -10.99 -0.09 8.90 16 12 O -0.55 -12.25 15.67 5.56 0.09 -12.16 16 13 C 0.10 1.29 5.40 -5.20 -0.03 1.26 16 14 N -0.72 -9.77 5.70 -59.67 -0.34 -10.11 16 15 C 0.23 2.91 6.67 -83.57 -0.56 2.35 16 16 C -0.17 -1.90 9.09 -39.37 -0.36 -2.26 16 17 C 0.00 -0.03 6.32 -39.51 -0.25 -0.28 16 18 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 19 C -0.14 -1.41 9.82 -39.52 -0.39 -1.80 16 20 C -0.13 -1.38 8.26 -39.47 -0.33 -1.70 16 21 C 0.03 0.38 6.50 -39.09 -0.25 0.13 16 22 O -0.32 -3.53 9.68 -19.85 -0.19 -3.72 16 23 C 0.41 3.22 5.97 101.05 0.60 3.82 16 24 F -0.20 -1.78 15.57 2.25 0.04 -1.74 16 25 F -0.20 -1.78 15.60 2.25 0.04 -1.75 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.80 8.14 -51.94 -0.42 0.38 16 29 H 0.39 6.36 8.32 -40.82 -0.34 6.02 16 30 H 0.09 0.97 7.95 -51.93 -0.41 0.55 16 31 H 0.09 0.97 7.95 -51.93 -0.41 0.55 16 32 H 0.42 6.37 6.80 -40.82 -0.28 6.10 16 33 H 0.14 1.39 6.74 -52.49 -0.35 1.03 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.34 5.09 -52.49 -0.27 1.07 16 36 H 0.18 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -31.80 338.20 -6.78 -38.58 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.29 Total: 7.71 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.09 Total: 3.74 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.05 Total: -48.90 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.11 Total: -15.89 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.07 Total: -3.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.80 -6.78 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819077853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.904 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds