Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00247 * 2 1 4 4 H 1.48497 * 109.47287 * 239.99947 * 3 2 1 5 5 H 1.48504 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47336 * 119.99921 * 3 2 1 7 7 C 1.37882 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99870 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.34766 * 120.00184 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00041 * 359.97438 * 11 10 9 13 13 C 1.50704 * 120.00405 * 180.02562 * 11 10 9 14 14 N 1.46493 * 109.47458 * 179.97438 * 13 11 10 15 15 C 1.39962 * 120.00292 * 179.97438 * 14 13 11 16 16 C 1.38721 * 120.08033 * 0.02562 * 15 14 13 17 17 C 1.38319 * 119.96794 * 179.97438 * 16 15 14 18 18 Cl 1.73604 * 119.93139 * 179.97438 * 17 16 15 19 19 C 1.38358 * 120.13453 * 0.02562 * 17 16 15 20 20 C 1.38282 * 120.16657 * 0.27436 * 19 17 16 21 21 C 1.38493 * 120.02949 * 359.45193 * 20 19 17 22 22 O 1.36035 * 120.06790 * 180.27967 * 21 20 19 23 23 C 1.42893 * 116.99738 * 0.26319 * 22 21 20 24 24 F 1.39895 * 109.47818 * 300.00444 * 23 22 21 25 25 F 1.39904 * 109.47026 * 60.00724 * 23 22 21 26 26 H 0.97008 * 120.00429 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46976 * 60.00361 * 9 7 2 28 28 H 1.08989 * 109.47455 * 299.99723 * 9 7 2 29 29 H 0.97007 * 119.99783 * 0.02562 * 10 9 7 30 30 H 1.09004 * 109.46746 * 59.99566 * 13 11 10 31 31 H 1.08994 * 109.46812 * 300.00423 * 13 11 10 32 32 H 0.97002 * 120.00260 * 0.02562 * 14 13 11 33 33 H 1.08000 * 120.01604 * 0.02562 * 16 15 14 34 34 H 1.08002 * 119.91381 * 179.97438 * 19 17 16 35 35 H 1.07994 * 119.98623 * 179.69886 * 20 19 17 36 36 H 1.09009 * 109.46787 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7537 -4.8833 0.0019 12 8 0.5613 -5.1050 0.0029 13 6 2.7329 -6.0289 0.0022 14 7 2.0004 -7.2975 0.0032 15 6 2.7002 -8.5097 0.0031 16 6 4.0874 -8.5117 0.0027 17 6 4.7765 -9.7110 0.0031 18 17 6.5126 -9.7124 0.0018 19 6 4.0851 -10.9094 0.0035 20 6 2.7023 -10.9139 -0.0022 21 6 2.0053 -9.7171 0.0030 22 8 0.6450 -9.7207 0.0031 23 6 -0.0004 -10.9956 0.0035 24 9 0.3773 -11.7099 -1.1385 25 9 0.3774 -11.7091 1.1460 26 1 -0.4851 0.8401 0.0004 27 1 0.6239 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 3.1566 -3.4355 0.0010 30 1 3.3596 -5.9708 0.8922 31 1 3.3595 -5.9714 -0.8877 32 1 1.0304 -7.2976 0.0032 33 1 4.6290 -7.5773 0.0027 34 1 4.6268 -11.8438 0.0035 35 1 2.1656 -11.8510 -0.0068 36 1 -1.0814 -10.8555 0.0030 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819077853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -186.071589 kcal Electronic energy + Delta-G solvation = -25380.002806 eV Core-core repulsion = 20945.719760 eV Total energy + Delta-G solvation = -4434.283047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.068 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29853 -48.28930 -41.37370 -40.55223 -38.72265 -37.46278 -36.43247 -35.95757 -34.39671 -31.40022 -31.24523 -29.53893 -27.45071 -27.02784 -24.68960 -23.50872 -23.02860 -21.49548 -20.21411 -19.49653 -18.96299 -18.87135 -18.16914 -17.72055 -17.09889 -16.93086 -16.77355 -16.65403 -15.91876 -15.81216 -15.77430 -15.07650 -15.04736 -14.87212 -14.70767 -14.59142 -14.32500 -14.13133 -13.97820 -13.97362 -13.62680 -13.56837 -12.97004 -12.88899 -12.68297 -12.37629 -12.25337 -12.24499 -11.86167 -11.51950 -11.15753 -10.94342 -10.80022 -9.89776 -9.65410 -8.42725 -8.29403 -6.45793 0.06465 0.34352 1.12491 1.44337 1.47727 1.55792 1.59557 1.62261 2.00583 2.37735 2.54129 2.54847 2.69296 3.06050 3.50838 3.68626 3.71847 3.78033 3.94364 4.14955 4.24096 4.29197 4.36633 4.55142 4.60539 5.08294 5.09220 5.20328 5.23201 5.37451 5.44453 5.60255 5.69162 5.83370 6.15784 6.54800 6.64820 6.82496 7.22137 7.39400 8.82423 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.002475 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.869682 B =11311.293012 C =13151.066828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.492 3.508 12 O -0.595 6.595 13 C 0.116 3.884 14 N -0.732 5.732 15 C 0.216 3.784 16 C -0.169 4.169 17 C -0.011 4.011 18 Cl -0.061 7.061 19 C -0.136 4.136 20 C -0.134 4.134 21 C 0.020 3.980 22 O -0.334 6.334 23 C 0.409 3.591 24 F -0.207 7.207 25 F -0.207 7.207 26 H 0.269 0.731 27 H -0.010 1.010 28 H -0.010 1.010 29 H 0.413 0.587 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.410 0.590 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 -24.387 0.002 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.279 3.721 12 O -0.477 6.477 13 C -0.011 4.011 14 N -0.364 5.364 15 C 0.111 3.889 16 C -0.193 4.193 17 C -0.038 4.038 18 Cl -0.032 7.032 19 C -0.156 4.156 20 C -0.153 4.153 21 C -0.027 4.027 22 O -0.252 6.252 23 C 0.319 3.681 24 F -0.189 7.189 25 F -0.189 7.189 26 H 0.077 0.923 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.249 0.751 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.247 0.753 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.165 0.835 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.468 -24.090 0.002 25.535 hybrid contribution -0.010 0.730 0.000 0.730 sum 8.458 -23.360 0.001 24.844 Atomic orbital electron populations 1.70122 1.08260 1.28633 1.49935 1.26039 0.95735 1.03861 0.93886 0.85235 0.77926 0.76722 0.79526 1.18647 1.21302 1.18637 1.21604 0.94433 0.90503 1.52931 0.89565 1.18565 0.88643 0.84114 0.94313 1.46086 1.11582 1.05157 1.72101 1.21182 0.89672 0.85242 0.76032 1.90648 1.19167 1.85174 1.52739 1.21183 0.93128 0.80836 1.06002 1.44360 1.09217 1.01193 1.81621 1.17047 0.90703 0.83552 0.97628 1.20514 0.90487 0.99005 1.09272 1.20612 0.84900 0.94417 1.03910 1.98373 1.09060 1.98937 1.96854 1.20810 0.92860 0.97737 1.04241 1.21326 0.95221 0.96290 1.02505 1.18521 0.81830 0.93656 1.08711 1.86600 1.17948 1.31370 1.89264 1.24097 0.98914 0.74022 0.71032 1.93072 1.93623 1.79586 1.52609 1.93076 1.93630 1.79623 1.52564 0.92264 0.99238 0.99229 0.75081 0.86391 0.86388 0.75271 0.82424 0.82878 0.83511 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.08 13.28 21.45 0.28 -54.80 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.98 41.25 29.54 68.60 2.03 43.27 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.56 -29.17 9.28 25.60 0.24 -28.93 16 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.27 13.99 5.43 85.63 0.46 14.46 16 10 N -0.70 -27.10 5.55 -466.80 -2.59 -29.69 16 11 C 0.49 17.92 7.90 87.66 0.69 18.61 16 12 O -0.60 -27.42 15.67 -3.04 -0.05 -27.47 16 13 C 0.12 2.77 5.40 85.64 0.46 3.23 16 14 N -0.73 -19.31 5.70 -342.71 -1.95 -21.26 16 15 C 0.22 5.11 6.67 38.22 0.25 5.36 16 16 C -0.17 -3.39 9.09 22.40 0.20 -3.19 16 17 C -0.01 -0.21 6.32 22.32 0.14 -0.07 16 18 Cl -0.06 -1.05 28.95 -2.72 -0.08 -1.13 16 19 C -0.14 -2.47 9.82 22.31 0.22 -2.25 16 20 C -0.13 -2.69 8.26 22.34 0.18 -2.50 16 21 C 0.02 0.46 6.50 22.59 0.15 0.61 16 22 O -0.33 -7.30 9.68 -93.95 -0.91 -8.21 16 23 C 0.41 5.93 5.97 113.37 0.68 6.61 16 24 F -0.21 -3.49 15.57 44.97 0.70 -2.79 16 25 F -0.21 -3.50 15.60 44.97 0.70 -2.79 16 26 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.41 12.66 8.32 -92.70 -0.77 11.89 16 30 H 0.12 2.20 7.95 -2.38 -0.02 2.18 16 31 H 0.12 2.19 7.95 -2.39 -0.02 2.18 16 32 H 0.41 12.61 6.80 -92.71 -0.63 11.98 16 33 H 0.16 2.57 6.74 -2.91 -0.02 2.55 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.15 2.65 5.09 -2.91 -0.01 2.63 16 36 H 0.23 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -71.56 338.20 2.05 -69.51 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.23 Total: 22.72 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 4.15 Total: 12.65 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -4.26 Total: -105.76 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.96 Total: -35.68 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 1.40 Total: -5.58 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -71.56 2.05 -69.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819077853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.560 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds