Wall clock time and date at job start Tue Mar 31 2020 17:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39815 * 120.08589 * 100.35284 * 3 2 1 5 5 C 1.37649 * 119.92753 * 179.74112 * 4 3 2 6 6 C 1.39156 * 120.11612 * 0.49127 * 5 4 3 7 7 N 1.39545 * 119.91394 * 179.76304 * 6 5 4 8 8 C 1.46765 * 124.34455 * 353.92439 * 7 6 5 9 9 C 1.54476 * 105.47130 * 197.03538 * 8 7 6 10 10 H 1.08998 * 110.97134 * 92.74130 * 9 8 7 11 11 C 1.50704 * 110.97186 * 216.46278 * 9 8 7 12 12 O 1.21212 * 119.99630 * 0.27956 * 11 9 8 13 13 O 1.34308 * 120.00083 * 179.97438 * 11 9 8 14 14 C 1.34924 * 116.99942 * 180.02562 * 13 11 9 15 15 H 1.08006 * 119.99861 * 0.02562 * 14 13 11 16 16 C 1.38749 * 120.00297 * 180.02562 * 14 13 11 17 17 N 1.31440 * 119.99681 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00269 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46967 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46883 * 119.99536 * 18 16 14 21 21 H 1.48503 * 109.46725 * 239.99609 * 18 16 14 22 22 C 1.54624 * 101.76904 * 334.58512 * 9 8 7 23 23 C 1.34414 * 124.35607 * 173.94465 * 7 6 5 24 24 O 1.21287 * 124.94015 * 359.60741 * 23 7 6 25 25 C 1.39028 * 120.18231 * 359.48496 * 6 5 4 26 26 C 1.37877 * 120.06222 * 0.27904 * 25 6 5 27 27 Cl 1.73605 * 120.05423 * 179.97438 * 26 25 6 28 28 H 1.08001 * 120.03522 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.94355 * 180.25558 * 5 4 3 30 30 H 1.09002 * 110.24558 * 78.03558 * 8 7 6 31 31 H 1.08996 * 110.24638 * 316.03588 * 8 7 6 32 32 H 0.97006 * 120.00015 * 180.02562 * 17 16 14 33 33 H 1.08995 * 110.49197 * 143.47207 * 22 9 8 34 34 H 1.09003 * 110.48236 * 266.12558 * 22 9 8 35 35 H 1.07997 * 119.96800 * 180.25494 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.2184 -1.1901 5 6 4.6453 0.2236 -1.1854 6 6 5.3403 0.0025 -0.0003 7 7 6.7357 0.0038 -0.0013 8 6 7.5628 0.1000 -1.2099 9 6 8.9713 -0.3699 -0.7838 10 1 9.0980 -1.4372 -0.9655 11 6 10.0409 0.4247 -1.4878 12 8 9.7315 1.3019 -2.2651 13 8 11.3369 0.1651 -1.2494 14 6 12.2435 0.9133 -1.9119 15 1 11.9135 1.6801 -2.5972 16 6 13.5996 0.6975 -1.7129 17 7 14.0011 -0.2354 -0.8786 18 14 14.8546 1.7337 -2.6297 19 1 14.1503 2.7077 -3.5016 20 1 15.7010 2.4649 -1.6529 21 1 15.7103 0.8518 -3.4636 22 6 8.9612 -0.0632 0.7316 23 6 7.4951 -0.0834 1.1044 24 8 7.0672 -0.1668 2.2362 25 6 4.6482 -0.2141 1.1859 26 6 3.2695 -0.2161 1.1907 27 17 2.4055 -0.4871 2.6719 28 1 2.7307 0.3860 -2.1114 29 1 5.1868 0.3959 -2.1038 30 1 7.5993 1.1314 -1.5607 31 1 7.1679 -0.5508 -1.9900 32 1 14.9491 -0.3861 -0.7391 33 1 9.5049 -0.8322 1.2802 34 1 9.3903 0.9201 0.9246 35 1 5.1911 -0.3812 2.1044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837834107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:39 Heat of formation + Delta-G solvation = -52.682762 kcal Electronic energy + Delta-G solvation = -24674.873791 eV Core-core repulsion = 20664.771353 eV Total energy + Delta-G solvation = -4010.102438 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55965 -39.62748 -39.00095 -37.12014 -36.79581 -36.54669 -35.32190 -33.49545 -32.31350 -31.38637 -30.06387 -27.96055 -26.01218 -24.57000 -23.94473 -22.42515 -20.46919 -19.81517 -19.44534 -18.09649 -17.94296 -17.46134 -16.55918 -15.88178 -15.63252 -15.20975 -14.94754 -14.65002 -14.58592 -14.50709 -14.37338 -14.15989 -13.77009 -13.64487 -13.35070 -13.08216 -12.97405 -12.79903 -12.60873 -12.05247 -11.93200 -11.80843 -11.62072 -11.40177 -11.38185 -11.27276 -10.61924 -10.51895 -10.44269 -10.06513 -9.94048 -9.33373 -9.29547 -8.75629 -8.37841 -6.58940 -4.27589 0.20707 0.74300 1.58469 2.10011 2.37431 2.38909 2.72719 2.92470 3.09397 3.16346 3.23402 3.41340 3.54051 3.63399 3.98902 4.18384 4.30851 4.47205 4.59485 4.64742 4.79281 4.84933 4.97827 5.05734 5.21339 5.36502 5.45003 5.50423 5.63013 5.76447 5.79734 5.84229 5.89163 6.39826 6.49291 6.62277 7.19202 7.22282 7.69777 7.74722 8.45519 8.89641 9.59963 10.58040 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.002319 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.070948 B =12072.744135 C =12820.867453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.258 3.742 3 C -0.060 4.060 4 C -0.025 4.025 5 C -0.158 4.158 6 C 0.222 3.778 7 N -0.559 5.559 8 C 0.106 3.894 9 C -0.083 4.083 10 H 0.121 0.879 11 C 0.402 3.598 12 O -0.551 6.551 13 O -0.203 6.203 14 C -0.385 4.385 15 H 0.099 0.901 16 C 0.045 3.955 17 N -0.859 5.859 18 Si 0.943 3.057 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.138 4.138 23 C 0.524 3.476 24 O -0.501 6.501 25 C -0.158 4.158 26 C 0.038 3.962 27 Cl -0.048 7.048 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.272 0.728 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.181 -1.708 1.034 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.057 4.057 3 C -0.066 4.066 4 C -0.046 4.046 5 C -0.179 4.179 6 C 0.124 3.876 7 N -0.280 5.280 8 C -0.015 4.015 9 C -0.103 4.103 10 H 0.139 0.861 11 C 0.248 3.752 12 O -0.449 6.449 13 O -0.109 6.109 14 C -0.461 4.461 15 H 0.117 0.883 16 C -0.161 4.161 17 N -0.495 5.495 18 Si 0.768 3.232 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.178 4.178 23 C 0.315 3.685 24 O -0.376 6.376 25 C -0.179 4.179 26 C 0.008 3.992 27 Cl -0.018 7.018 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -17.028 -1.651 1.686 17.191 hybrid contribution 1.083 0.394 -0.364 1.209 sum -15.944 -1.257 1.322 16.048 Atomic orbital electron populations 1.81230 1.11772 1.08828 1.06865 1.25355 0.92312 0.93913 0.94126 1.15767 0.84800 1.12275 0.93753 1.20912 0.93218 0.94244 0.96245 1.20890 0.93864 1.05501 0.97663 1.17818 0.81887 0.93991 0.93898 1.45987 1.03447 1.68259 1.10328 1.22359 0.88219 1.05390 0.85537 1.21585 0.91804 1.02271 0.94610 0.86098 1.22322 0.84725 0.84580 0.83576 1.90583 1.82998 1.33704 1.37592 1.83850 1.13157 1.54999 1.58900 1.21310 0.84492 1.16357 1.23901 0.88345 1.25369 0.96944 0.96997 0.96746 1.69987 1.16532 1.29965 1.32979 0.85602 0.79468 0.79170 0.78985 1.18854 1.20054 1.20064 1.22350 0.92544 1.07334 0.95527 1.21310 0.89671 0.73943 0.83616 1.90627 1.78061 1.47724 1.21140 1.21452 0.91715 1.04375 1.00359 1.20666 0.91992 0.99755 0.86753 1.98413 1.76199 1.94265 1.32969 0.83464 0.83431 0.87304 0.88438 0.91856 0.85801 0.86194 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.21 18.54 41.84 0.78 -4.44 16 2 C 0.26 2.77 14.38 -22.47 -0.32 2.45 16 3 C -0.06 -0.56 5.74 -106.77 -0.61 -1.17 16 4 C -0.02 -0.18 9.75 -39.21 -0.38 -0.56 16 5 C -0.16 -1.22 9.38 -39.46 -0.37 -1.59 16 6 C 0.22 2.27 6.60 -83.71 -0.55 1.71 16 7 N -0.56 -6.22 3.13 -112.26 -0.35 -6.57 16 8 C 0.11 1.15 5.61 -3.12 -0.02 1.14 16 9 C -0.08 -1.12 3.66 -90.14 -0.33 -1.45 16 10 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 11 C 0.40 8.07 7.13 36.01 0.26 8.33 16 12 O -0.55 -12.21 14.74 -19.05 -0.28 -12.50 16 13 O -0.20 -5.03 9.75 -20.70 -0.20 -5.23 16 14 C -0.38 -10.22 9.65 30.92 0.30 -9.92 16 15 H 0.10 2.64 6.86 -52.48 -0.36 2.28 16 16 C 0.04 1.15 5.49 -17.53 -0.10 1.06 16 17 N -0.86 -23.17 13.67 55.48 0.76 -22.41 16 18 Si 0.94 19.61 29.55 -169.99 -5.02 14.59 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.14 -1.77 6.41 -26.75 -0.17 -1.94 16 23 C 0.52 6.77 7.92 -10.86 -0.09 6.68 16 24 O -0.50 -7.53 14.79 5.55 0.08 -7.45 16 25 C -0.16 -1.73 9.04 -39.42 -0.36 -2.09 16 26 C 0.04 0.40 6.34 -39.10 -0.25 0.15 16 27 Cl -0.05 -0.51 28.02 -51.86 -1.45 -1.96 16 28 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 29 H 0.15 0.86 6.99 -52.49 -0.37 0.49 16 30 H 0.11 1.31 6.96 -51.93 -0.36 0.95 16 31 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.12 1.65 7.89 -51.93 -0.41 1.24 16 35 H 0.18 2.21 5.23 -52.49 -0.27 1.94 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -31.31 334.85 -6.21 -37.53 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -2.57 Total: 0.61 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.99 Total: 2.78 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 1.18 Total: -33.41 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.40 Total: -25.17 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.31 -6.21 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837834107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.156 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds