Wall clock time and date at job start Tue Mar 31 2020 17:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39815 * 120.08589 * 100.35284 * 3 2 1 5 5 C 1.37649 * 119.92753 * 179.74112 * 4 3 2 6 6 C 1.39156 * 120.11612 * 0.49127 * 5 4 3 7 7 N 1.39545 * 119.91394 * 179.76304 * 6 5 4 8 8 C 1.46765 * 124.34455 * 353.92439 * 7 6 5 9 9 C 1.54476 * 105.47130 * 197.03538 * 8 7 6 10 10 H 1.08998 * 110.97134 * 92.74130 * 9 8 7 11 11 C 1.50704 * 110.97186 * 216.46278 * 9 8 7 12 12 O 1.21212 * 119.99630 * 0.27956 * 11 9 8 13 13 O 1.34308 * 120.00083 * 179.97438 * 11 9 8 14 14 C 1.34924 * 116.99942 * 180.02562 * 13 11 9 15 15 H 1.08006 * 119.99861 * 0.02562 * 14 13 11 16 16 C 1.38749 * 120.00297 * 180.02562 * 14 13 11 17 17 N 1.31440 * 119.99681 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00269 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46967 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46883 * 119.99536 * 18 16 14 21 21 H 1.48503 * 109.46725 * 239.99609 * 18 16 14 22 22 C 1.54624 * 101.76904 * 334.58512 * 9 8 7 23 23 C 1.34414 * 124.35607 * 173.94465 * 7 6 5 24 24 O 1.21287 * 124.94015 * 359.60741 * 23 7 6 25 25 C 1.39028 * 120.18231 * 359.48496 * 6 5 4 26 26 C 1.37877 * 120.06222 * 0.27904 * 25 6 5 27 27 Cl 1.73605 * 120.05423 * 179.97438 * 26 25 6 28 28 H 1.08001 * 120.03522 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.94355 * 180.25558 * 5 4 3 30 30 H 1.09002 * 110.24558 * 78.03558 * 8 7 6 31 31 H 1.08996 * 110.24638 * 316.03588 * 8 7 6 32 32 H 0.97006 * 120.00015 * 180.02562 * 17 16 14 33 33 H 1.08995 * 110.49197 * 143.47207 * 22 9 8 34 34 H 1.09003 * 110.48236 * 266.12558 * 22 9 8 35 35 H 1.07997 * 119.96800 * 180.25494 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.2184 -1.1901 5 6 4.6453 0.2236 -1.1854 6 6 5.3403 0.0025 -0.0003 7 7 6.7357 0.0038 -0.0013 8 6 7.5628 0.1000 -1.2099 9 6 8.9713 -0.3699 -0.7838 10 1 9.0980 -1.4372 -0.9655 11 6 10.0409 0.4247 -1.4878 12 8 9.7315 1.3019 -2.2651 13 8 11.3369 0.1651 -1.2494 14 6 12.2435 0.9133 -1.9119 15 1 11.9135 1.6801 -2.5972 16 6 13.5996 0.6975 -1.7129 17 7 14.0011 -0.2354 -0.8786 18 14 14.8546 1.7337 -2.6297 19 1 14.1503 2.7077 -3.5016 20 1 15.7010 2.4649 -1.6529 21 1 15.7103 0.8518 -3.4636 22 6 8.9612 -0.0632 0.7316 23 6 7.4951 -0.0834 1.1044 24 8 7.0672 -0.1668 2.2362 25 6 4.6482 -0.2141 1.1859 26 6 3.2695 -0.2161 1.1907 27 17 2.4055 -0.4871 2.6719 28 1 2.7307 0.3860 -2.1114 29 1 5.1868 0.3959 -2.1038 30 1 7.5993 1.1314 -1.5607 31 1 7.1679 -0.5508 -1.9900 32 1 14.9491 -0.3861 -0.7391 33 1 9.5049 -0.8322 1.2802 34 1 9.3903 0.9201 0.9246 35 1 5.1911 -0.3812 2.1044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837834107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:38 Heat of formation + Delta-G solvation = -70.085536 kcal Electronic energy + Delta-G solvation = -24675.628432 eV Core-core repulsion = 20664.771353 eV Total energy + Delta-G solvation = -4010.857079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54205 -40.97016 -40.13555 -38.14985 -37.67807 -37.59030 -36.91880 -34.54111 -34.17623 -32.11657 -30.97304 -28.99244 -27.71518 -25.69614 -24.86793 -23.44659 -21.50553 -21.12599 -20.21923 -19.84298 -19.10953 -18.70938 -17.62725 -17.19452 -16.52734 -16.47415 -16.22306 -16.11930 -15.86005 -15.44032 -15.40414 -15.00720 -14.75775 -14.54073 -14.52277 -14.28985 -13.95162 -13.85644 -13.64411 -13.48470 -13.13686 -12.89607 -12.71473 -12.57419 -12.48289 -12.31231 -12.21439 -12.11807 -11.89663 -11.28400 -11.17573 -10.83655 -10.65829 -10.06320 -9.21411 -8.50269 -6.28633 -0.57594 0.04111 0.79442 1.14397 1.30506 1.39139 1.47821 1.53737 1.57587 1.64053 1.88253 2.11110 2.57811 2.65904 2.73835 3.00467 3.09409 3.29710 3.59244 3.73946 3.87702 3.99308 4.03085 4.09934 4.37189 4.48148 4.60507 4.67561 4.74800 4.81900 4.89728 4.94394 5.02100 5.15979 5.24172 5.62666 5.72964 5.86532 6.35927 6.68217 6.72258 6.96556 7.78342 8.69654 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.002319 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.070948 B =12072.744135 C =12820.867453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.277 3.723 3 C -0.062 4.062 4 C -0.006 4.006 5 C -0.142 4.142 6 C 0.208 3.792 7 N -0.552 5.552 8 C 0.114 3.886 9 C -0.075 4.075 10 H 0.148 0.852 11 C 0.411 3.589 12 O -0.570 6.570 13 O -0.236 6.236 14 C -0.413 4.413 15 H 0.087 0.913 16 C -0.002 4.002 17 N -0.899 5.899 18 Si 1.011 2.989 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.264 1.264 22 C -0.135 4.135 23 C 0.527 3.473 24 O -0.526 6.526 25 C -0.168 4.168 26 C 0.033 3.967 27 Cl -0.058 7.058 28 H 0.183 0.817 29 H 0.177 0.823 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.277 0.723 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -1.615 -0.874 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.038 4.038 3 C -0.067 4.067 4 C -0.027 4.027 5 C -0.162 4.162 6 C 0.111 3.889 7 N -0.273 5.273 8 C -0.007 4.007 9 C -0.095 4.095 10 H 0.166 0.834 11 C 0.258 3.742 12 O -0.467 6.467 13 O -0.144 6.144 14 C -0.489 4.489 15 H 0.104 0.896 16 C -0.203 4.203 17 N -0.537 5.537 18 Si 0.831 3.169 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.189 1.189 22 C -0.175 4.175 23 C 0.317 3.683 24 O -0.403 6.403 25 C -0.189 4.189 26 C 0.003 3.997 27 Cl -0.029 7.029 28 H 0.200 0.800 29 H 0.194 0.806 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -17.792 -1.556 -0.237 17.861 hybrid contribution 1.146 0.380 0.223 1.228 sum -16.645 -1.175 -0.014 16.687 Atomic orbital electron populations 1.81255 1.12858 1.10177 1.08030 1.25490 0.92406 0.92848 0.93051 1.15881 0.84033 1.12569 0.94228 1.21292 0.93006 0.91879 0.96507 1.21188 0.94002 1.03536 0.97512 1.17986 0.81266 0.95011 0.94628 1.45868 1.03918 1.67860 1.09649 1.22386 0.86524 1.05752 0.85991 1.21656 0.90983 1.02664 0.94168 0.83394 1.23504 0.84443 0.83896 0.82385 1.90563 1.83215 1.34585 1.38359 1.83878 1.14900 1.55726 1.59855 1.21419 0.85657 1.17057 1.24770 0.89569 1.26409 0.98483 0.98031 0.97364 1.70065 1.17299 1.31679 1.34622 0.84641 0.76784 0.77625 0.77889 1.18610 1.19079 1.18863 1.22291 0.93060 1.06970 0.95213 1.21165 0.89585 0.73805 0.83699 1.90633 1.78315 1.49136 1.22224 1.21262 0.91910 1.05462 1.00239 1.20668 0.91793 1.00476 0.86807 1.98409 1.76302 1.94387 1.33831 0.79953 0.80602 0.88111 0.84565 0.91346 0.85079 0.87470 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.80 18.54 19.00 0.35 -10.45 16 2 C 0.28 5.44 14.38 88.33 1.27 6.71 16 3 C -0.06 -0.99 5.74 -21.25 -0.12 -1.11 16 4 C -0.01 -0.06 9.75 22.51 0.22 0.16 16 5 C -0.14 -1.57 9.38 22.35 0.21 -1.36 16 6 C 0.21 3.71 6.60 38.32 0.25 3.96 16 7 N -0.55 -11.01 3.13 -627.66 -1.96 -12.98 16 8 C 0.11 2.13 5.61 86.83 0.49 2.61 16 9 C -0.08 -1.90 3.66 -10.48 -0.04 -1.94 16 10 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 11 C 0.41 16.31 7.13 71.24 0.51 16.82 16 12 O -0.57 -24.96 14.74 20.77 0.31 -24.65 16 13 O -0.24 -11.89 9.75 14.86 0.14 -11.75 16 14 C -0.41 -22.38 9.65 67.94 0.66 -21.72 16 15 H 0.09 4.73 6.86 -2.91 -0.02 4.71 16 16 C 0.00 -0.11 5.49 84.87 0.47 0.36 16 17 N -0.90 -49.23 13.67 21.62 0.30 -48.94 16 18 Si 1.01 40.08 29.55 68.60 2.03 42.11 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 C -0.14 -3.41 6.41 30.59 0.20 -3.21 16 23 C 0.53 13.15 7.92 87.90 0.70 13.84 16 24 O -0.53 -15.87 14.79 -3.05 -0.05 -15.92 16 25 C -0.17 -3.50 9.04 22.37 0.20 -3.30 16 26 C 0.03 0.63 6.34 22.58 0.14 0.77 16 27 Cl -0.06 -1.23 28.02 -2.72 -0.08 -1.31 16 28 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 29 H 0.18 1.02 6.99 -2.91 -0.02 1.00 16 30 H 0.10 2.14 6.96 -2.39 -0.02 2.12 16 31 H 0.14 1.55 7.69 -2.39 -0.02 1.53 16 32 H 0.28 13.87 8.31 -92.70 -0.77 13.09 16 33 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.11 2.99 7.89 -2.39 -0.02 2.97 16 35 H 0.16 3.97 5.23 -2.91 -0.02 3.96 16 Total: -1.00 -70.57 334.85 7.37 -63.20 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.18 Total: 8.08 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.15 Total: 12.59 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.31 Total: -72.36 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: 0.41 Total: -52.32 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -70.57 7.37 -63.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837834107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.887 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds