Wall clock time and date at job start Tue Mar 31 2020 19:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48493 * 109.47209 * 269.99889 * 3 2 1 5 5 H 1.48507 * 109.46943 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47348 * 149.99558 * 3 2 1 7 7 C 1.37884 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99762 * 0.02562 * 7 2 1 10 10 O 1.42907 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99838 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 179.97438 * 11 10 9 13 13 S 1.81404 * 109.46946 * 180.02562 * 12 11 10 14 14 O 1.42100 * 109.46600 * 296.38822 * 13 12 11 15 15 C 1.81397 * 103.00143 * 180.02562 * 13 12 11 16 16 C 1.50695 * 109.47452 * 180.02562 * 15 13 12 17 17 C 1.38283 * 119.97037 * 269.72871 * 16 15 13 18 18 C 1.38253 * 120.11470 * 179.72583 * 17 16 15 19 19 C 1.38162 * 120.04815 * 0.54090 * 18 17 16 20 20 C 1.38713 * 119.94797 * 359.73443 * 19 18 17 21 21 O 1.35903 * 120.05596 * 179.97438 * 20 19 18 22 22 C 1.42893 * 117.00349 * 0.02562 * 21 20 19 23 23 F 1.39904 * 109.47283 * 300.00775 * 22 21 20 24 24 F 1.39904 * 109.46845 * 60.00489 * 22 21 20 25 25 C 1.38121 * 119.97443 * 89.99763 * 16 15 13 26 26 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47569 * 60.00186 * 9 7 2 28 28 H 1.08996 * 109.47305 * 299.99830 * 9 7 2 29 29 H 1.09001 * 109.46938 * 60.00058 * 11 10 9 30 30 H 1.08992 * 109.47388 * 300.00049 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00244 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00425 * 12 11 10 33 33 H 1.09007 * 109.46846 * 299.99983 * 15 13 12 34 34 H 1.09007 * 109.47453 * 59.99610 * 15 13 12 35 35 H 1.08000 * 119.94456 * 359.97334 * 17 16 15 36 36 H 1.07991 * 119.97490 * 180.25244 * 18 17 16 37 37 H 1.08008 * 120.02682 * 179.74942 * 19 18 17 38 38 H 1.08994 * 109.47779 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.02747 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0017 11 6 1.5649 -4.8755 0.0013 12 6 2.6479 -5.9563 0.0020 13 16 1.8677 -7.5940 0.0006 14 8 1.1252 -7.7658 1.2000 15 6 3.2878 -8.7226 0.0025 16 6 2.7972 -10.1474 0.0009 17 6 2.5756 -10.8030 1.1981 18 6 2.1201 -12.1083 1.2002 19 6 1.8958 -12.7647 0.0053 20 6 2.1228 -12.1112 -1.1970 21 8 1.9034 -12.7549 -2.3736 22 6 1.4385 -14.1040 -2.2983 23 9 2.3769 -14.8830 -1.6128 24 9 0.2169 -14.1389 -1.6173 25 6 2.5745 -10.7992 -1.1963 26 1 -0.4849 0.8401 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 0.9458 -4.9826 -0.8894 30 1 0.9438 -4.9824 0.8905 31 1 3.2687 -5.8492 -0.8875 32 1 3.2674 -5.8493 0.8925 33 1 3.8932 -8.5461 -0.8867 34 1 3.8908 -8.5465 0.8933 35 1 2.7549 -10.2932 2.1332 36 1 1.9439 -12.6168 2.1364 37 1 1.5438 -13.7858 0.0073 38 1 1.3049 -14.4991 -3.3052 39 1 2.7515 -10.2881 -2.1311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840872780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:19 Heat of formation + Delta-G solvation = -207.982544 kcal Electronic energy + Delta-G solvation = -24870.012688 eV Core-core repulsion = 20540.363561 eV Total energy + Delta-G solvation = -4329.649127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.088 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.83016 -47.81889 -40.40386 -38.06059 -36.84091 -35.74440 -33.00167 -32.86658 -30.95725 -30.86014 -27.59081 -27.00652 -26.53776 -23.08360 -22.84673 -22.29315 -21.82244 -19.17483 -18.57434 -18.39081 -17.56903 -16.61908 -16.48937 -16.36575 -16.10959 -15.63576 -15.34891 -15.15235 -14.89489 -14.63414 -14.42330 -14.31161 -14.21471 -14.11717 -13.85366 -13.42628 -13.36699 -13.25840 -12.96106 -12.67819 -12.35965 -12.01692 -11.92334 -11.72597 -11.40072 -11.13690 -10.92897 -10.75464 -10.72307 -10.45532 -10.07045 -9.23559 -9.11341 -8.88252 -8.81787 -8.23805 -8.21743 -6.13100 -4.15355 0.69554 0.99183 1.51759 2.07427 2.51447 2.98174 3.28898 3.33874 3.35819 3.39240 3.66613 3.80408 4.14191 4.27592 4.33901 4.40724 4.60785 4.74079 4.87252 4.93538 4.99221 5.15799 5.23138 5.23719 5.35615 5.59262 5.63281 5.77631 5.77797 6.03380 6.07530 6.11808 6.19114 6.19581 6.68559 7.06251 7.38945 7.76255 8.11262 8.51430 8.97055 9.49375 10.98352 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.034656 B = 0.001717 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.752338 B =16305.348273 C =16480.675719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.192 3.808 10 O -0.393 6.393 11 C 0.083 3.917 12 C -0.445 4.445 13 S 1.255 4.745 14 O -0.833 6.833 15 C -0.415 4.415 16 C -0.028 4.028 17 C -0.133 4.133 18 C -0.077 4.077 19 C -0.193 4.193 20 C 0.106 3.894 21 O -0.319 6.319 22 C 0.412 3.588 23 F -0.200 7.200 24 F -0.198 7.198 25 C -0.130 4.130 26 H 0.265 0.735 27 H 0.009 0.991 28 H 0.006 0.994 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.183 0.817 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -31.740 -7.330 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.118 3.882 10 O -0.313 6.313 11 C 0.004 3.996 12 C -0.582 4.582 13 S 1.453 4.547 14 O -0.829 6.829 15 C -0.549 4.549 16 C -0.030 4.030 17 C -0.152 4.152 18 C -0.095 4.095 19 C -0.212 4.212 20 C 0.063 3.937 21 O -0.237 6.237 22 C 0.321 3.679 23 F -0.182 7.182 24 F -0.180 7.180 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.199 0.801 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.355 -31.724 -7.448 32.759 hybrid contribution 1.361 0.935 2.132 2.697 sum 4.716 -30.789 -5.316 31.598 Atomic orbital electron populations 1.69964 1.06098 1.27241 1.50309 1.24968 0.95017 0.99485 0.95092 0.86309 0.79618 0.82149 0.78244 1.20388 1.21042 1.19676 1.21042 0.94055 0.89296 1.51116 0.91537 1.20268 0.88831 0.83437 0.95672 1.87882 1.35550 1.12633 1.95232 1.21677 0.92795 0.85186 0.99908 1.27763 1.08636 1.13356 1.08454 1.71020 0.85951 0.85547 1.12131 1.93135 1.56244 1.82642 1.50850 1.26793 1.16292 1.02905 1.08914 1.18873 0.97920 0.93546 0.92618 1.21132 1.01078 0.94993 0.98007 1.20932 0.96672 0.94314 0.97608 1.21537 1.06133 1.01365 0.92193 1.18756 0.98596 0.92665 0.83698 1.86614 1.81174 1.25583 1.30290 1.23383 0.72596 0.78469 0.93421 1.93101 1.66429 1.75423 1.83216 1.93112 1.45653 1.95862 1.83356 1.20298 1.03910 0.91917 0.98881 0.92577 0.97318 0.97586 0.93275 0.94047 0.85778 0.89027 0.84988 0.88083 0.85593 0.85217 0.84935 0.80096 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -15.34 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.35 5.69 36.00 0.20 5.55 16 10 O -0.39 -9.60 10.33 -35.23 -0.36 -9.97 16 11 C 0.08 1.55 5.95 37.16 0.22 1.77 16 12 C -0.45 -6.02 6.29 37.16 0.23 -5.79 16 13 S 1.26 13.47 13.14 -107.50 -1.41 12.06 16 14 O -0.83 -14.19 18.14 -35.23 -0.64 -14.83 16 15 C -0.42 -3.49 6.05 36.00 0.22 -3.27 16 16 C -0.03 -0.27 5.14 -104.65 -0.54 -0.81 16 17 C -0.13 -1.41 9.70 -39.56 -0.38 -1.79 16 18 C -0.08 -0.75 10.04 -39.60 -0.40 -1.14 16 19 C -0.19 -1.85 8.26 -39.43 -0.33 -2.17 16 20 C 0.11 0.99 6.48 -39.22 -0.25 0.73 16 21 O -0.32 -2.42 10.43 -19.43 -0.20 -2.63 16 22 C 0.41 2.09 5.98 101.05 0.60 2.69 16 23 F -0.20 -1.35 15.58 2.25 0.04 -1.32 16 24 F -0.20 -1.40 15.58 2.25 0.04 -1.37 16 25 C -0.13 -1.13 9.64 -39.43 -0.38 -1.51 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.12 1.35 8.14 -51.92 -0.42 0.92 16 32 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 33 H 0.13 0.69 8.08 -51.92 -0.42 0.27 16 34 H 0.10 0.90 8.08 -51.92 -0.42 0.48 16 35 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.15 5.10 -52.48 -0.27 0.88 16 38 H 0.18 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -38.90 360.00 -7.51 -46.40 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.88 Total: -4.53 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.22 Total: -19.89 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.21 Total: -27.42 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.07 Total: -2.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 13.47 SS G_CDS: -1.41 Total: 12.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.90 -7.51 -46.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840872780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.580 kcal (2) G-P(sol) polarization free energy of solvation -38.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds