Wall clock time and date at job start Tue Mar 31 2020 18:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86789 * 119.99817 * 2 1 4 4 H 1.48504 * 109.47231 * 239.99790 * 3 2 1 5 5 H 1.48498 * 109.47607 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47238 * 119.99977 * 3 2 1 7 7 C 1.37881 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99328 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00399 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99946 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47231 * 180.02562 * 11 10 9 13 13 S 1.81401 * 109.47450 * 180.02562 * 12 11 10 14 14 O 1.42096 * 108.57655 * 65.51280 * 13 12 11 15 15 O 1.42104 * 108.57799 * 294.49236 * 13 12 11 16 16 C 1.81397 * 101.92462 * 180.02562 * 13 12 11 17 17 C 1.50701 * 109.47029 * 180.02562 * 16 13 12 18 18 C 1.38253 * 119.99890 * 270.01708 * 17 16 13 19 19 C 1.38220 * 120.00051 * 180.02562 * 18 17 16 20 20 C 1.38255 * 119.99697 * 359.95697 * 19 18 17 21 21 C 1.38217 * 120.00132 * 0.07194 * 20 19 18 22 22 C 1.50706 * 119.99801 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46875 * 119.94861 * 22 21 20 24 24 F 1.39903 * 109.46738 * 239.95151 * 22 21 20 25 25 C 1.38215 * 119.99815 * 89.99870 * 17 16 13 26 26 H 0.97000 * 120.00422 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46931 * 59.99757 * 9 7 2 28 28 H 1.09001 * 109.47126 * 300.00176 * 9 7 2 29 29 H 1.09007 * 109.46793 * 59.99967 * 11 10 9 30 30 H 1.09006 * 109.47123 * 300.00370 * 11 10 9 31 31 H 1.09007 * 109.47296 * 60.00229 * 12 11 10 32 32 H 1.08994 * 109.47651 * 300.00433 * 12 11 10 33 33 H 1.08990 * 109.47316 * 59.99778 * 16 13 12 34 34 H 1.09006 * 109.47134 * 299.99716 * 16 13 12 35 35 H 1.08002 * 120.00348 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.00153 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.99804 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46840 * 359.94760 * 22 21 20 39 39 H 1.07995 * 120.00164 * 359.72517 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 16 1.8679 -7.5939 -0.0051 14 8 1.1697 -7.7617 -1.2313 15 8 1.1686 -7.7634 1.2203 16 6 3.3091 -8.6955 -0.0046 17 6 2.8453 -10.1294 -0.0063 18 6 2.6310 -10.7880 1.1902 19 6 2.2062 -12.1033 1.1886 20 6 1.9947 -12.7600 -0.0096 21 6 2.2096 -12.1016 -1.2057 22 6 1.9796 -12.8177 -2.5118 23 9 0.9973 -12.1444 -3.2459 24 9 3.1714 -12.8465 -3.2439 25 6 2.6339 -10.7858 -1.2041 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8920 28 1 0.6240 -2.5575 0.8880 29 1 0.9446 -4.9819 -0.8932 30 1 0.9452 -4.9830 0.8869 31 1 3.2681 -5.8496 0.8865 32 1 3.2682 -5.8488 -0.8934 33 1 3.9091 -8.5084 0.8859 34 1 3.9105 -8.5075 -0.8940 35 1 2.7963 -10.2751 2.1261 36 1 2.0391 -12.6180 2.1233 37 1 1.6631 -13.7879 -0.0108 38 1 1.6501 -13.8376 -2.3137 39 1 2.7968 -10.2698 -2.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840933447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:35 Heat of formation + Delta-G solvation = -197.730592 kcal Electronic energy + Delta-G solvation = -25406.052683 eV Core-core repulsion = 21076.848113 eV Total energy + Delta-G solvation = -4329.204569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.33461 -47.31932 -39.94326 -37.08217 -37.01865 -36.10949 -33.96248 -32.95577 -32.17137 -31.40017 -28.26961 -27.13597 -26.55499 -23.34452 -22.65568 -22.33990 -21.69826 -19.02297 -17.82528 -17.77317 -17.55400 -17.12499 -16.63502 -16.54506 -16.44340 -15.96961 -15.59230 -15.23260 -15.05666 -14.74991 -14.39226 -14.26308 -13.85729 -13.68624 -13.55103 -13.34048 -13.28925 -13.11453 -13.05038 -12.39103 -12.16234 -12.15151 -12.07826 -11.83426 -11.43568 -11.31282 -11.29901 -11.10369 -10.89856 -10.80814 -10.71609 -10.12665 -9.56611 -9.28067 -9.19850 -8.96347 -8.29133 -6.15751 -4.18778 -0.36267 0.60642 0.81474 2.56884 3.05516 3.24418 3.29169 3.32062 3.34562 3.37664 3.71588 3.77968 3.89793 4.15172 4.29538 4.39881 4.50750 4.55340 4.56387 4.64173 4.76636 4.86723 4.94629 5.00018 5.20407 5.25971 5.30870 5.42377 5.51046 5.75640 5.81447 5.82635 5.88562 5.93442 6.29264 6.99590 7.33345 7.71350 8.05572 8.41396 8.91962 9.45837 10.95640 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.002052 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.535625 B =13643.402278 C =14081.199095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.190 3.810 10 O -0.387 6.387 11 C 0.075 3.925 12 C -0.607 4.607 13 S 2.415 3.585 14 O -0.926 6.926 15 O -0.928 6.928 16 C -0.573 4.573 17 C -0.089 4.089 18 C -0.080 4.080 19 C -0.120 4.120 20 C -0.078 4.078 21 C -0.172 4.172 22 C 0.314 3.686 23 F -0.195 7.195 24 F -0.200 7.200 25 C -0.063 4.063 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -29.837 0.415 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.116 3.884 10 O -0.307 6.307 11 C -0.004 4.004 12 C -0.736 4.736 13 S 2.597 3.403 14 O -0.923 6.923 15 O -0.925 6.925 16 C -0.699 4.699 17 C -0.091 4.091 18 C -0.099 4.099 19 C -0.137 4.137 20 C -0.096 4.096 21 C -0.172 4.172 22 C 0.260 3.740 23 F -0.176 7.176 24 F -0.181 7.181 25 C -0.082 4.082 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.973 -29.847 0.368 30.441 hybrid contribution 1.082 1.201 -0.109 1.620 sum 7.055 -28.646 0.259 29.503 Atomic orbital electron populations 1.69951 1.06118 1.27476 1.49948 1.24969 0.95030 0.99513 0.94990 0.86345 0.79271 0.81705 0.78836 1.19970 1.21075 1.19987 1.20973 0.94029 0.89154 1.51606 0.91501 1.20341 0.88856 0.83203 0.95984 1.87886 1.35360 1.12132 1.95300 1.21762 0.91974 0.85635 1.01045 1.30399 1.12450 1.18265 1.12478 1.08346 0.77893 0.78196 0.75864 1.93606 1.68471 1.84869 1.45372 1.93590 1.68488 1.84937 1.45524 1.29417 1.20956 1.06512 1.13003 1.18905 1.02888 0.93335 0.93952 1.21378 0.95927 0.94797 0.97822 1.21174 0.99642 0.94626 0.98305 1.21049 0.97193 1.00029 0.91364 1.20353 1.06186 0.95982 0.94716 1.20388 0.74130 0.96528 0.82966 1.93059 1.62311 1.83100 1.79138 1.93024 1.48111 1.97525 1.79412 1.21003 0.95246 0.93472 0.98435 0.92429 0.97176 0.97177 0.92629 0.92658 0.84313 0.84304 0.83477 0.83569 0.84333 0.84463 0.84743 0.86259 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -15.24 9.43 -34.44 -0.32 -15.57 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.19 5.24 5.69 36.00 0.20 5.45 16 10 O -0.39 -9.24 10.33 -35.23 -0.36 -9.61 16 11 C 0.07 1.39 5.95 37.15 0.22 1.61 16 12 C -0.61 -7.68 6.17 37.15 0.23 -7.45 16 13 S 2.42 28.77 4.70 -107.50 -0.51 28.27 16 14 O -0.93 -14.20 18.10 -57.83 -1.05 -15.24 16 15 O -0.93 -13.68 18.10 -57.83 -1.05 -14.73 16 16 C -0.57 -4.31 5.93 36.01 0.21 -4.10 16 17 C -0.09 -0.83 5.14 -104.62 -0.54 -1.37 16 18 C -0.08 -0.65 9.70 -39.58 -0.38 -1.04 16 19 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 20 C -0.08 -0.50 9.67 -39.58 -0.38 -0.88 16 21 C -0.17 -1.45 5.37 -104.62 -0.56 -2.01 16 22 C 0.31 2.35 5.45 36.01 0.20 2.55 16 23 F -0.19 -2.02 17.26 2.25 0.04 -1.98 16 24 F -0.20 -1.82 17.26 2.25 0.04 -1.78 16 25 C -0.06 -0.61 9.25 -39.58 -0.37 -0.98 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.14 1.44 8.14 -51.92 -0.42 1.01 16 32 H 0.14 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.15 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.15 0.74 8.09 -51.92 -0.42 0.32 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.41 7.95 -52.48 -0.42 -0.01 16 38 H 0.12 0.41 7.88 -51.93 -0.41 0.00 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -38.38 364.29 -8.68 -47.06 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -5.02 Total: -4.64 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.99 Total: -23.45 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -2.46 Total: -39.58 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 28.77 SS G_CDS: -0.51 Total: 28.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.38 -8.68 -47.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840933447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.671 kcal (2) G-P(sol) polarization free energy of solvation -38.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds