Wall clock time and date at job start Tue Mar 31 2020 18:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86789 * 119.99817 * 2 1 4 4 H 1.48504 * 109.47231 * 239.99790 * 3 2 1 5 5 H 1.48498 * 109.47607 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47238 * 119.99977 * 3 2 1 7 7 C 1.37881 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99328 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00399 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99946 * 179.97438 * 10 9 7 12 12 C 1.52990 * 109.47231 * 180.02562 * 11 10 9 13 13 S 1.81401 * 109.47450 * 180.02562 * 12 11 10 14 14 O 1.42096 * 108.57655 * 65.51280 * 13 12 11 15 15 O 1.42104 * 108.57799 * 294.49236 * 13 12 11 16 16 C 1.81397 * 101.92462 * 180.02562 * 13 12 11 17 17 C 1.50701 * 109.47029 * 180.02562 * 16 13 12 18 18 C 1.38253 * 119.99890 * 270.01708 * 17 16 13 19 19 C 1.38220 * 120.00051 * 180.02562 * 18 17 16 20 20 C 1.38255 * 119.99697 * 359.95697 * 19 18 17 21 21 C 1.38217 * 120.00132 * 0.07194 * 20 19 18 22 22 C 1.50706 * 119.99801 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46875 * 119.94861 * 22 21 20 24 24 F 1.39903 * 109.46738 * 239.95151 * 22 21 20 25 25 C 1.38215 * 119.99815 * 89.99870 * 17 16 13 26 26 H 0.97000 * 120.00422 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46931 * 59.99757 * 9 7 2 28 28 H 1.09001 * 109.47126 * 300.00176 * 9 7 2 29 29 H 1.09007 * 109.46793 * 59.99967 * 11 10 9 30 30 H 1.09006 * 109.47123 * 300.00370 * 11 10 9 31 31 H 1.09007 * 109.47296 * 60.00229 * 12 11 10 32 32 H 1.08994 * 109.47651 * 300.00433 * 12 11 10 33 33 H 1.08990 * 109.47316 * 59.99778 * 16 13 12 34 34 H 1.09006 * 109.47134 * 299.99716 * 16 13 12 35 35 H 1.08002 * 120.00348 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.00153 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.99804 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.46840 * 359.94760 * 22 21 20 39 39 H 1.07995 * 120.00164 * 359.72517 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 8 2.1796 -3.5853 -0.0027 11 6 1.5651 -4.8755 -0.0032 12 6 2.6480 -5.9562 -0.0036 13 16 1.8679 -7.5939 -0.0051 14 8 1.1697 -7.7617 -1.2313 15 8 1.1686 -7.7634 1.2203 16 6 3.3091 -8.6955 -0.0046 17 6 2.8453 -10.1294 -0.0063 18 6 2.6310 -10.7880 1.1902 19 6 2.2062 -12.1033 1.1886 20 6 1.9947 -12.7600 -0.0096 21 6 2.2096 -12.1016 -1.2057 22 6 1.9796 -12.8177 -2.5118 23 9 0.9973 -12.1444 -3.2459 24 9 3.1714 -12.8465 -3.2439 25 6 2.6339 -10.7858 -1.2041 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8920 28 1 0.6240 -2.5575 0.8880 29 1 0.9446 -4.9819 -0.8932 30 1 0.9452 -4.9830 0.8869 31 1 3.2681 -5.8496 0.8865 32 1 3.2682 -5.8488 -0.8934 33 1 3.9091 -8.5084 0.8859 34 1 3.9105 -8.5075 -0.8940 35 1 2.7963 -10.2751 2.1261 36 1 2.0391 -12.6180 2.1233 37 1 1.6631 -13.7879 -0.0108 38 1 1.6501 -13.8376 -2.3137 39 1 2.7968 -10.2698 -2.1388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840933447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:34 Heat of formation + Delta-G solvation = -225.275831 kcal Electronic energy + Delta-G solvation = -25407.247134 eV Core-core repulsion = 21076.848113 eV Total energy + Delta-G solvation = -4330.399021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97678 -47.98614 -40.48904 -38.84589 -38.13668 -37.16509 -35.07880 -34.54682 -32.85340 -32.70355 -29.35080 -28.82328 -27.10607 -24.86294 -24.29509 -23.24720 -22.34336 -19.98896 -18.75192 -18.42640 -18.35416 -18.27725 -18.18288 -17.54799 -17.19528 -17.13816 -16.72896 -16.70183 -16.32368 -16.03604 -15.34304 -15.25889 -14.94765 -14.60980 -14.42647 -14.36993 -14.01250 -13.95997 -13.90981 -13.68672 -13.23880 -13.16177 -13.06731 -12.97900 -12.90379 -12.69020 -12.56512 -12.40891 -12.20565 -12.11400 -11.88607 -11.76316 -11.35951 -10.96459 -10.39593 -10.13510 -9.86738 -8.35868 -6.50031 -1.28576 0.03645 0.24394 1.39296 1.44527 1.53145 1.67900 2.28209 2.39384 2.55526 2.73428 2.94553 2.97937 3.09399 3.24831 3.28782 3.60367 3.70255 3.71646 3.87047 3.97680 4.05721 4.15634 4.18107 4.23761 4.43786 4.44636 4.50415 4.64565 4.73450 4.83464 4.89002 5.06528 5.20924 5.28067 5.33180 5.49013 5.78315 5.87027 6.37232 6.69769 7.21440 8.76501 Molecular weight = 334.09amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.002052 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.535625 B =13643.402278 C =14081.199095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.199 3.801 10 O -0.395 6.395 11 C 0.054 3.946 12 C -0.605 4.605 13 S 2.415 3.585 14 O -0.972 6.972 15 O -0.965 6.965 16 C -0.540 4.540 17 C -0.115 4.115 18 C -0.093 4.093 19 C -0.124 4.124 20 C -0.070 4.070 21 C -0.189 4.189 22 C 0.306 3.694 23 F -0.217 7.217 24 F -0.212 7.212 25 C -0.090 4.090 26 H 0.272 0.728 27 H -0.011 1.011 28 H -0.009 1.009 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 -31.277 1.390 32.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.590 4.590 8 H 0.086 0.914 9 C 0.124 3.876 10 O -0.315 6.315 11 C -0.025 4.025 12 C -0.732 4.732 13 S 2.602 3.398 14 O -0.969 6.969 15 O -0.962 6.962 16 C -0.671 4.671 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.141 4.141 20 C -0.088 4.088 21 C -0.190 4.190 22 C 0.253 3.747 23 F -0.198 7.198 24 F -0.193 7.193 25 C -0.109 4.109 26 H 0.081 0.919 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.184 0.816 32 H 0.179 0.821 33 H 0.205 0.795 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.012 -31.258 1.340 32.296 hybrid contribution 0.428 1.425 -0.390 1.538 sum 8.440 -29.833 0.950 31.018 Atomic orbital electron populations 1.70074 1.07927 1.28957 1.50025 1.26063 0.96034 1.03694 0.93715 0.85143 0.77999 0.76195 0.79519 1.18834 1.20061 1.18729 1.21341 0.94327 0.90402 1.52916 0.91390 1.20009 0.88907 0.84636 0.94044 1.87826 1.35024 1.13387 1.95277 1.22115 0.94548 0.84907 1.00885 1.30418 1.11186 1.16576 1.15053 1.08155 0.79270 0.78171 0.74207 1.93546 1.71254 1.85336 1.46797 1.93535 1.70978 1.85277 1.46381 1.29158 1.17661 1.03741 1.16538 1.19111 1.04281 0.93934 0.94300 1.21762 0.95644 0.95769 0.98019 1.21630 0.98493 0.94281 0.99718 1.21516 0.95366 1.01597 0.90354 1.20627 1.06550 0.95835 0.95974 1.20959 0.73261 0.98435 0.82051 1.93012 1.63199 1.83861 1.79723 1.92992 1.48947 1.97626 1.79760 1.21193 0.96522 0.94666 0.98520 0.91885 0.99287 0.99099 0.93136 0.92785 0.81582 0.82051 0.79536 0.80735 0.82783 0.81544 0.80988 0.81549 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 44.20 29.54 68.60 2.03 46.22 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 8 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 9 C 0.20 11.47 5.69 71.24 0.41 11.87 16 10 O -0.40 -19.45 10.33 -148.98 -1.54 -20.99 16 11 C 0.05 2.07 5.95 71.98 0.43 2.49 16 12 C -0.60 -14.89 6.17 71.98 0.44 -14.45 16 13 S 2.41 57.16 4.70 -56.49 -0.27 56.90 16 14 O -0.97 -31.12 18.10 -127.37 -2.31 -33.43 16 15 O -0.96 -28.76 18.10 -127.37 -2.30 -31.06 16 16 C -0.54 -6.85 5.93 71.24 0.42 -6.43 16 17 C -0.11 -1.94 5.14 -19.87 -0.10 -2.04 16 18 C -0.09 -1.29 9.70 22.27 0.22 -1.08 16 19 C -0.12 -1.27 10.05 22.27 0.22 -1.05 16 20 C -0.07 -0.69 9.67 22.27 0.22 -0.47 16 21 C -0.19 -2.91 5.37 -19.86 -0.11 -3.01 16 22 C 0.31 4.17 5.45 71.24 0.39 4.56 16 23 F -0.22 -4.48 17.26 44.97 0.78 -3.70 16 24 F -0.21 -3.71 17.26 44.97 0.78 -2.94 16 25 C -0.09 -1.71 9.25 22.27 0.21 -1.50 16 26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.17 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.16 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.19 0.90 8.09 -2.40 -0.02 0.88 16 34 H 0.17 1.26 8.09 -2.39 -0.02 1.24 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 37 H 0.17 0.27 7.95 -2.91 -0.02 0.25 16 38 H 0.17 0.62 7.88 -2.39 -0.02 0.60 16 39 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -87.59 364.29 1.95 -85.64 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.06 Total: 2.96 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 3.45 Total: -43.25 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.35 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -6.15 Total: -85.48 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 1.55 Total: -6.64 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 57.16 SS G_CDS: -0.27 Total: 56.90 kcal Total: -87.59 1.95 -85.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840933447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.635 kcal (2) G-P(sol) polarization free energy of solvation -87.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds