Wall clock time and date at job start Tue Mar 31 2020 17:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99670 * 2 1 4 4 C 1.53001 * 109.47094 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47101 * 65.00063 * 4 3 2 6 6 C 1.36936 * 120.00034 * 65.41401 * 5 4 3 7 7 H 1.07997 * 120.00380 * 183.34570 * 6 5 4 8 8 C 1.38819 * 119.99860 * 3.34668 * 6 5 4 9 9 N 1.31612 * 120.00024 * 23.79151 * 8 6 5 10 10 Si 1.86797 * 119.99700 * 203.79906 * 8 6 5 11 11 H 1.48502 * 109.47435 * 89.99821 * 10 8 6 12 12 H 1.48508 * 109.46813 * 209.99562 * 10 8 6 13 13 H 1.48504 * 109.47166 * 329.99417 * 10 8 6 14 14 S 1.65597 * 120.00061 * 245.40908 * 5 4 3 15 15 O 1.42096 * 106.40464 * 328.95581 * 14 5 4 16 16 O 1.42101 * 106.40170 * 196.03545 * 14 5 4 17 17 C 1.76203 * 107.21717 * 82.49559 * 14 5 4 18 18 C 1.38717 * 120.40053 * 245.04333 * 17 14 5 19 19 C 1.38561 * 118.43275 * 179.97438 * 18 17 14 20 20 C 1.38406 * 119.15268 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 119.63329 * 180.29509 * 20 19 18 22 22 N 1.31948 * 120.72749 * 0.02562 * 20 19 18 23 23 C 1.31905 * 121.70799 * 0.02562 * 22 20 19 24 24 C 1.50702 * 119.60983 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.47387 * 59.99975 * 1 2 3 26 26 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47089 * 299.99436 * 1 2 3 28 28 H 1.08999 * 109.47003 * 60.00538 * 3 2 1 29 29 H 1.09004 * 109.47636 * 299.99843 * 3 2 1 30 30 H 1.09003 * 109.47267 * 304.99936 * 4 3 2 31 31 H 1.09004 * 109.47204 * 185.00326 * 4 3 2 32 32 H 0.97002 * 120.00242 * 180.02562 * 9 8 6 33 33 H 1.07998 * 120.78212 * 359.95752 * 18 17 14 34 34 H 1.07998 * 120.42480 * 180.02562 * 19 18 17 35 35 H 1.08998 * 109.46679 * 98.19302 * 24 23 22 36 36 H 1.08995 * 109.47459 * 218.19495 * 24 23 22 37 37 H 1.09003 * 109.47027 * 338.20109 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 3.7890 1.2165 -2.4424 7 1 4.0640 0.7368 -3.3701 8 6 3.2463 2.4942 -2.4560 9 7 3.3398 3.2603 -1.3899 10 14 2.3832 3.1260 -3.9874 11 1 0.9400 2.7826 -3.9195 12 1 2.5378 4.6007 -4.0698 13 1 2.9857 2.4971 -5.1902 14 16 4.6990 -0.9249 -1.2294 15 8 5.3924 -1.0149 0.0076 16 8 5.3353 -1.0817 -2.4903 17 6 3.4133 -2.1282 -1.1678 18 6 3.2709 -2.9471 -0.0572 19 6 2.2455 -3.8789 -0.0518 20 6 1.4029 -3.9607 -1.1468 21 17 0.1093 -5.1184 -1.1499 22 7 1.5688 -3.1648 -2.1860 23 6 2.5349 -2.2675 -2.2249 24 6 2.6814 -1.3830 -3.4362 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6885 1.8463 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8514 0.5683 0.8409 31 1 3.9784 2.1767 0.0890 32 1 2.9603 4.1529 -1.3992 33 1 3.9437 -2.8605 0.7832 34 1 2.1049 -4.5325 0.7964 35 1 2.2124 -0.4187 -3.2407 36 1 3.7394 -1.2354 -3.6525 37 1 2.1980 -1.8553 -4.2915 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840949362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:17 Heat of formation + Delta-G solvation = -80.136284 kcal Electronic energy + Delta-G solvation = -26628.122893 eV Core-core repulsion = 22752.273933 eV Total energy + Delta-G solvation = -3875.848961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.30740 -39.07436 -38.20270 -37.82174 -37.15813 -36.68080 -34.09035 -33.44057 -33.13754 -30.51507 -28.72139 -27.24205 -26.16793 -25.03894 -23.50266 -23.07848 -20.45203 -19.24451 -18.86767 -18.27157 -18.01882 -17.62034 -17.05342 -16.46200 -16.23751 -16.18571 -15.92639 -15.57623 -15.18211 -14.93838 -14.37842 -14.18426 -14.03326 -13.95583 -13.56941 -13.47022 -13.10385 -13.01273 -12.81720 -12.71662 -12.69746 -12.55626 -12.47337 -12.38850 -12.08760 -11.93689 -11.74704 -11.62157 -11.19297 -11.08801 -10.73327 -10.37396 -10.06838 -9.70912 -8.05720 -5.69002 -0.56315 -0.24486 0.08553 0.59738 1.50524 1.56539 1.62148 2.17640 2.42551 2.62094 2.86938 3.14056 3.20328 3.25900 3.55052 3.72739 3.91263 4.10449 4.39590 4.42413 4.46279 4.49854 4.53708 4.61490 4.69790 4.74517 4.78685 4.82494 4.92658 5.06287 5.19008 5.44025 5.46794 5.62635 5.89906 6.43459 6.53393 6.62203 7.08210 7.44299 8.85026 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.005850 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.411185 B = 4785.325548 C = 5193.212028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.407 6.407 3 C 0.065 3.935 4 C 0.134 3.866 5 N -0.833 5.833 6 C -0.318 4.318 7 H 0.114 0.886 8 C 0.019 3.981 9 N -0.878 5.878 10 Si 0.943 3.057 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.264 1.264 14 S 2.661 3.339 15 O -0.995 6.995 16 O -0.990 6.990 17 C -0.723 4.723 18 C 0.031 3.969 19 C -0.177 4.177 20 C 0.208 3.792 21 Cl -0.017 7.017 22 N -0.514 5.514 23 C 0.256 3.744 24 C -0.159 4.159 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.269 0.731 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -8.330 3.823 11.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.326 6.326 3 C -0.012 4.012 4 C 0.008 3.992 5 N -0.663 5.663 6 C -0.450 4.450 7 H 0.132 0.868 8 C -0.186 4.186 9 N -0.519 5.519 10 Si 0.768 3.232 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.188 1.188 14 S 2.752 3.248 15 O -0.985 6.985 16 O -0.980 6.980 17 C -0.808 4.808 18 C 0.005 3.995 19 C -0.199 4.199 20 C 0.043 3.957 21 Cl 0.012 6.988 22 N -0.227 5.227 23 C 0.117 3.883 24 C -0.215 4.215 25 H 0.048 0.952 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.200 0.800 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.257 -8.765 3.178 11.229 hybrid contribution -1.135 0.470 -0.015 1.229 sum -7.393 -8.296 3.163 11.553 Atomic orbital electron populations 1.22635 0.81504 1.01948 0.99867 1.87828 1.19683 1.29653 1.95439 1.23059 0.94880 0.83201 1.00101 1.21602 0.92645 1.01522 0.83444 1.53077 1.75503 1.25811 1.11918 1.19592 1.41204 0.98836 0.85371 0.86806 1.25377 0.97852 0.95743 0.99600 1.70023 1.42639 1.08626 1.30610 0.85681 0.79385 0.77376 0.80716 1.20319 1.21330 1.18811 1.03610 0.76301 0.72737 0.72154 1.93427 1.72372 1.87252 1.45484 1.93384 1.75177 1.86452 1.42960 1.32356 1.23788 1.21531 1.03129 1.21564 0.94280 0.88643 0.95034 1.22096 0.95894 1.02151 0.99718 1.22134 0.90740 0.91388 0.91388 1.98396 1.47390 1.54862 1.98158 1.66907 1.21596 1.06666 1.27541 1.20695 0.85341 0.88859 0.93359 1.21794 1.06241 0.99198 0.94309 0.95188 0.90355 0.93142 0.93644 0.92567 0.92406 0.85655 0.92025 0.81267 0.79963 0.87694 0.87685 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.12 11.01 113.37 1.25 2.37 16 2 O -0.41 -14.98 10.22 -148.98 -1.52 -16.50 16 3 C 0.07 2.53 5.46 71.98 0.39 2.93 16 4 C 0.13 5.64 5.42 86.38 0.47 6.10 16 5 N -0.83 -36.92 2.97 -343.44 -1.02 -37.94 16 6 C -0.32 -14.66 6.87 84.04 0.58 -14.08 16 7 H 0.11 5.26 5.67 -2.91 -0.02 5.25 16 8 C 0.02 0.84 3.76 84.86 0.32 1.16 16 9 N -0.88 -40.22 9.04 21.65 0.20 -40.03 16 10 Si 0.94 37.14 29.61 68.60 2.03 39.17 16 11 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 14 S 2.66 113.87 5.06 -56.49 -0.29 113.58 16 15 O -1.00 -44.20 15.81 -128.00 -2.02 -46.22 16 16 O -0.99 -46.05 14.19 -128.00 -1.82 -47.87 16 17 C -0.72 -27.02 5.50 22.36 0.12 -26.90 16 18 C 0.03 0.98 9.66 22.46 0.22 1.20 16 19 C -0.18 -4.71 9.88 22.39 0.22 -4.49 16 20 C 0.21 6.20 7.27 84.72 0.62 6.82 16 21 Cl -0.02 -0.40 29.11 -2.72 -0.08 -0.48 16 22 N -0.51 -17.98 10.25 -174.84 -1.79 -19.77 16 23 C 0.26 9.55 6.78 42.53 0.29 9.83 16 24 C -0.16 -5.85 8.18 71.24 0.58 -5.27 16 25 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 2.39 5.52 -2.39 -0.01 2.38 16 30 H 0.06 2.31 7.04 -2.39 -0.02 2.30 16 31 H 0.13 5.67 5.88 -2.39 -0.01 5.66 16 32 H 0.27 11.81 8.31 -92.71 -0.77 11.04 16 33 H 0.17 4.68 7.44 -2.91 -0.02 4.65 16 34 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 35 H 0.10 4.04 6.48 -2.39 -0.02 4.02 16 36 H 0.10 4.15 4.34 -2.39 -0.01 4.14 16 37 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -54.87 326.83 -0.14 -55.01 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 1.12 Total: 21.37 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 5.05 Total: -20.32 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -2.62 Total: -97.74 kcal Atomic # 8 Polarization: -105.23 SS G_CDS: -5.36 Total: -110.60 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 113.87 SS G_CDS: -0.29 Total: 113.58 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -54.87 -0.14 -55.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840949362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.130 kcal (2) G-P(sol) polarization free energy of solvation -54.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds