Wall clock time and date at job start Tue Mar 31 2020 18:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00514 * 2 1 4 4 H 1.48504 * 109.47113 * 269.99634 * 3 2 1 5 5 H 1.48498 * 109.47272 * 29.99147 * 3 2 1 6 6 H 1.48499 * 109.47326 * 149.99809 * 3 2 1 7 7 C 1.37881 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46740 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.46554 * 179.97438 * 10 9 7 12 12 O 1.42099 * 110.54921 * 68.37322 * 11 10 9 13 13 O 1.42106 * 110.54128 * 291.62004 * 11 10 9 14 14 N 1.65604 * 104.44921 * 179.97438 * 11 10 9 15 15 C 1.34776 * 120.00050 * 64.99357 * 14 11 10 16 16 O 1.21549 * 120.00201 * 0.02562 * 15 14 11 17 17 C 1.47846 * 119.99745 * 180.02562 * 15 14 11 18 18 C 1.40021 * 120.55367 * 179.97438 * 17 15 14 19 19 C 1.38361 * 118.28541 * 179.70393 * 18 17 15 20 20 C 1.38357 * 119.29972 * 0.27997 * 19 18 17 21 21 C 1.50700 * 119.45540 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.47108 * 210.00057 * 21 20 19 23 23 F 1.39898 * 109.47411 * 329.99738 * 21 20 19 24 24 N 1.31920 * 121.08459 * 359.97438 * 20 19 18 25 25 C 1.31704 * 121.87697 * 0.02562 * 24 20 19 26 26 H 0.97003 * 119.99415 * 0.02562 * 1 2 3 27 27 H 1.08989 * 109.47178 * 59.99592 * 9 7 2 28 28 H 1.09000 * 109.46781 * 299.99412 * 9 7 2 29 29 H 1.08989 * 109.47631 * 59.99854 * 10 9 7 30 30 H 1.09000 * 109.46991 * 299.99268 * 10 9 7 31 31 H 0.96998 * 119.99907 * 245.00073 * 14 11 10 32 32 H 1.08002 * 120.86196 * 359.97438 * 18 17 15 33 33 H 1.08003 * 120.34925 * 180.25565 * 19 18 17 34 34 H 1.08999 * 109.47436 * 90.00128 * 21 20 19 35 35 H 1.07997 * 119.71423 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 16 1.3379 -5.2330 0.0026 12 8 0.6644 -5.4207 -1.2345 13 8 0.6635 -5.4187 1.2395 14 7 2.5200 -6.3928 0.0032 15 6 3.3466 -6.5121 1.0611 16 8 3.2241 -5.7686 2.0149 17 6 4.4022 -7.5471 1.0614 18 6 5.2676 -7.6809 2.1540 19 6 6.2346 -8.6695 2.1073 20 6 6.3185 -9.4824 0.9909 21 6 7.3707 -10.5598 0.9361 22 9 7.7462 -10.7777 -0.3939 23 9 8.4880 -10.1586 1.6762 24 7 5.4925 -9.3298 -0.0264 25 6 4.5560 -8.4038 -0.0290 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8895 28 1 0.6239 -2.5567 0.8904 29 1 2.8711 -3.6041 0.8921 30 1 2.8723 -3.6048 -0.8878 31 1 2.6176 -6.9863 -0.7578 32 1 5.1798 -7.0322 3.0130 33 1 6.9169 -8.8048 2.9335 34 1 6.9688 -11.4819 1.3558 35 1 3.8983 -8.3100 -0.8805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847675539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:07 Heat of formation + Delta-G solvation = -202.772439 kcal Electronic energy + Delta-G solvation = -25520.851067 eV Core-core repulsion = 21087.887523 eV Total energy + Delta-G solvation = -4432.963544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.063 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.02511 -48.04589 -42.08307 -40.56711 -38.33754 -37.27775 -36.04525 -35.86783 -33.99929 -33.27686 -33.18698 -28.53538 -27.65121 -25.23108 -24.66093 -23.64433 -22.66851 -20.90817 -19.93152 -19.29536 -18.83769 -18.59269 -18.50191 -18.15053 -17.42388 -17.15519 -16.85964 -16.54955 -16.47881 -16.41489 -15.83558 -15.25128 -15.00244 -14.90367 -14.62629 -14.49592 -14.33712 -14.23480 -13.88557 -13.77932 -13.68860 -13.40944 -13.29972 -12.95826 -12.85826 -12.39446 -12.36707 -12.29167 -12.09963 -11.91457 -11.73516 -11.24516 -11.11469 -10.81988 -10.65911 -10.53267 -8.28057 -6.41851 -1.09025 -0.90436 -0.04358 1.07544 1.31119 1.40288 1.42111 1.53330 2.19467 2.35168 2.40472 2.54587 2.82097 3.05649 3.09414 3.12168 3.18746 3.51998 3.58084 3.67770 3.80621 3.96406 3.98713 4.02388 4.10233 4.42445 4.67068 4.68303 4.79464 5.18320 5.22326 5.23143 5.49875 5.66055 6.03014 6.17326 6.44214 6.70895 7.28180 8.84305 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.018782 B = 0.002533 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.438391 B =11049.699579 C =11812.649287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.602 3.398 12 O -0.964 6.964 13 O -0.973 6.973 14 N -1.034 6.034 15 C 0.589 3.411 16 O -0.514 6.514 17 C -0.187 4.187 18 C -0.010 4.010 19 C -0.138 4.138 20 C 0.069 3.931 21 C 0.325 3.675 22 F -0.201 7.201 23 F -0.196 7.196 24 N -0.476 5.476 25 C 0.150 3.850 26 H 0.268 0.732 27 H 0.017 0.983 28 H 0.007 0.993 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.448 0.552 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.512 -23.586 2.010 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.712 4.712 11 S 2.701 3.299 12 O -0.954 6.954 13 O -0.963 6.963 14 N -0.801 5.801 15 C 0.377 3.623 16 O -0.388 6.388 17 C -0.194 4.194 18 C -0.036 4.036 19 C -0.157 4.157 20 C -0.069 4.069 21 C 0.271 3.729 22 F -0.182 7.182 23 F -0.177 7.177 24 N -0.184 5.184 25 C -0.009 4.009 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.289 0.711 32 H 0.184 0.816 33 H 0.200 0.800 34 H 0.193 0.807 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.467 -23.743 1.970 28.405 hybrid contribution 0.372 1.691 0.212 1.744 sum 15.838 -22.052 2.182 27.238 Atomic orbital electron populations 1.70089 1.07984 1.28406 1.50689 1.26094 0.95888 1.03801 0.94295 0.85310 0.78559 0.77647 0.78734 1.19332 1.20780 1.18435 1.21479 0.93946 0.90735 1.51802 0.90777 1.18837 0.93463 0.92593 0.96810 1.30244 1.12908 1.15320 1.12684 1.05414 0.74529 0.76720 0.73277 1.93579 1.71042 1.85405 1.45414 1.93560 1.71508 1.84848 1.46354 1.54844 1.48018 1.49685 1.27539 1.18295 0.80296 0.83179 0.80521 1.91003 1.70201 1.43961 1.33640 1.20845 0.99311 0.99790 0.99484 1.22064 0.89707 0.94848 0.96964 1.22142 0.99280 0.94302 0.99987 1.22369 0.96134 0.96828 0.91539 1.20546 0.80137 0.97150 0.75103 1.93023 1.92262 1.95666 1.37254 1.93030 1.55322 1.92765 1.76598 1.67420 1.04260 1.19978 1.26752 1.23409 0.93360 0.87570 0.96600 0.92292 0.96516 0.97480 0.84528 0.82895 0.71060 0.81604 0.79992 0.80684 0.78677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 9 C 0.02 1.15 4.98 29.85 0.15 1.30 16 10 C -0.58 -22.00 5.82 71.98 0.42 -21.58 16 11 S 2.60 89.12 5.11 -56.49 -0.29 88.83 16 12 O -0.96 -35.79 18.08 -127.65 -2.31 -38.10 16 13 O -0.97 -41.34 17.04 -120.72 -2.06 -43.40 16 14 N -1.03 -22.79 5.56 -175.61 -0.98 -23.76 16 15 C 0.59 13.92 7.52 86.79 0.65 14.57 16 16 O -0.51 -16.29 14.52 12.49 0.18 -16.11 16 17 C -0.19 -3.16 5.89 -19.99 -0.12 -3.28 16 18 C -0.01 -0.14 9.72 22.73 0.22 0.09 16 19 C -0.14 -1.41 9.42 22.33 0.21 -1.20 16 20 C 0.07 0.86 6.58 42.57 0.28 1.14 16 21 C 0.32 2.94 5.72 71.24 0.41 3.34 16 22 F -0.20 -3.08 17.05 44.97 0.77 -2.32 16 23 F -0.20 -2.11 16.45 44.97 0.74 -1.37 16 24 N -0.48 -7.30 9.94 -182.82 -1.82 -9.11 16 25 C 0.15 2.05 10.71 85.02 0.91 2.96 16 26 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.14 5.07 7.19 -2.40 -0.02 5.05 16 30 H 0.15 4.78 8.14 -2.39 -0.02 4.76 16 31 H 0.45 5.66 6.86 -96.75 -0.66 5.00 16 32 H 0.17 2.18 7.74 -2.91 -0.02 2.16 16 33 H 0.18 0.84 7.59 -2.91 -0.02 0.82 16 34 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.20 1.40 6.42 -2.91 -0.02 1.38 16 Total: -1.00 -83.09 333.22 0.89 -82.20 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.51 Total: 6.11 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.83 Total: -32.14 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.51 Total: -89.07 kcal Atomic # 8 Polarization: -93.43 SS G_CDS: -4.18 Total: -97.61 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.51 Total: -3.68 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 89.12 SS G_CDS: -0.29 Total: 88.83 kcal Total: -83.09 0.89 -82.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847675539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.570 kcal (2) G-P(sol) polarization free energy of solvation -83.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds