Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00111 * 2 1 4 4 H 1.48509 * 109.46957 * 269.99954 * 3 2 1 5 5 H 1.48504 * 109.47165 * 29.99501 * 3 2 1 6 6 H 1.48493 * 109.47181 * 149.99972 * 3 2 1 7 7 C 1.37875 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99769 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00126 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00202 * 179.97438 * 10 9 7 12 12 O 1.21360 * 119.99513 * 359.97438 * 11 10 9 13 13 C 1.49343 * 120.00313 * 180.02562 * 11 10 9 14 14 O 1.21380 * 120.00117 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00313 * 179.97438 * 13 11 10 16 16 C 1.39721 * 120.00287 * 184.61627 * 15 13 11 17 17 C 1.38964 * 120.06245 * 144.89725 * 16 15 13 18 18 C 1.38089 * 119.97482 * 180.25486 * 17 16 15 19 19 C 1.38280 * 120.09745 * 359.46528 * 18 17 16 20 20 C 1.50699 * 119.93529 * 180.25661 * 19 18 17 21 21 F 1.39898 * 109.47234 * 0.25941 * 20 19 18 22 22 F 1.39895 * 109.47101 * 120.26319 * 20 19 18 23 23 F 1.39902 * 109.46762 * 240.25685 * 20 19 18 24 24 C 1.38504 * 120.12386 * 0.51913 * 19 18 17 25 25 F 1.35102 * 119.98173 * 179.74139 * 24 19 18 26 26 C 1.38337 * 120.02875 * 359.75526 * 24 19 18 27 27 H 0.97004 * 120.00096 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46805 * 59.99556 * 9 7 2 29 29 H 1.09001 * 109.46395 * 299.99459 * 9 7 2 30 30 H 0.97008 * 119.99837 * 359.97438 * 10 9 7 31 31 H 0.97006 * 119.99609 * 4.61443 * 15 13 11 32 32 H 1.08003 * 120.01544 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.94934 * 179.72608 * 18 17 16 34 34 H 1.07991 * 120.05106 * 180.02562 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1135 -1.8992 -0.0006 13 6 5.8227 -4.2296 -0.0008 14 8 5.0340 -5.1522 -0.0009 15 7 7.1478 -4.4760 -0.0014 16 6 7.6142 -5.7894 -0.0995 17 6 8.7839 -6.0624 -0.7983 18 6 9.2404 -7.3618 -0.8985 19 6 8.5412 -8.3909 -0.2950 20 6 9.0458 -9.8069 -0.4018 21 9 10.2291 -9.8253 -1.1479 22 9 9.2943 -10.3113 0.8792 23 9 8.0823 -10.5987 -1.0359 24 6 7.3750 -8.1234 0.4028 25 9 6.6914 -9.1318 0.9868 26 6 6.9100 -6.8244 0.5017 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.3695 -3.3126 -0.0001 31 1 7.7777 -3.7414 0.0662 32 1 9.3334 -5.2592 -1.2667 33 1 10.1471 -7.5741 -1.4454 34 1 6.0010 -6.6153 1.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861841835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = -230.764875 kcal Electronic energy + Delta-G solvation = -27466.428195 eV Core-core repulsion = 22478.410422 eV Total energy + Delta-G solvation = -4988.017773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.54827 -49.42816 -48.00557 -47.93423 -41.26302 -39.51807 -38.22459 -35.70529 -34.53154 -32.50789 -31.51804 -31.15969 -28.57106 -26.64064 -24.62715 -23.79269 -22.59195 -21.69988 -20.38989 -19.28337 -19.00180 -18.83559 -18.73415 -18.10298 -17.10972 -16.66878 -16.38204 -16.11431 -15.87284 -15.71205 -15.21521 -14.95505 -14.95071 -14.80107 -14.39978 -14.38725 -14.25212 -14.14984 -14.10668 -13.83829 -13.52730 -13.33717 -13.05459 -12.53981 -12.40401 -12.39330 -12.19990 -11.53082 -11.17476 -11.03162 -10.90901 -10.11357 -9.65643 -9.57658 -9.39790 -8.99512 -8.94830 -8.53985 -6.32266 -4.37083 0.14317 0.58417 1.40021 2.12360 2.26668 2.78877 3.16981 3.24686 3.27497 3.27943 3.29781 3.45147 3.59230 3.78883 4.03088 4.20340 4.21537 4.45342 4.58599 4.69761 4.88170 5.01689 5.21126 5.29848 5.42672 5.58088 5.71884 6.21683 6.45840 6.61974 6.77039 6.80617 7.13857 7.38146 7.82171 8.23076 8.29794 8.66774 9.24380 10.79348 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.002163 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.358581 B =12941.187312 C =13499.639750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.080 3.920 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.083 0.917 9 C 0.218 3.782 10 N -0.660 5.660 11 C 0.495 3.505 12 O -0.535 6.535 13 C 0.512 3.488 14 O -0.491 6.491 15 N -0.652 5.652 16 C 0.214 3.786 17 C -0.155 4.155 18 C -0.023 4.023 19 C -0.245 4.245 20 C 0.516 3.484 21 F -0.175 7.175 22 F -0.173 7.173 23 F -0.173 7.173 24 C 0.175 3.825 25 F -0.119 7.119 26 C -0.164 4.164 27 H 0.270 0.730 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.411 0.589 31 H 0.430 0.570 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.334 -16.074 -0.950 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.589 4.589 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.309 5.309 11 C 0.273 3.727 12 O -0.414 6.414 13 C 0.295 3.705 14 O -0.363 6.363 15 N -0.299 5.299 16 C 0.117 3.883 17 C -0.175 4.175 18 C -0.042 4.042 19 C -0.248 4.248 20 C 0.462 3.538 21 F -0.156 7.156 22 F -0.155 7.155 23 F -0.154 7.154 24 C 0.154 3.846 25 F -0.097 7.097 26 C -0.185 4.185 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.247 0.753 31 H 0.270 0.730 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 21.008 -15.922 -0.932 26.377 hybrid contribution 0.221 0.452 0.080 0.510 sum 21.229 -15.470 -0.852 26.282 Atomic orbital electron populations 1.69872 1.06221 1.27635 1.48548 1.24783 0.94823 0.99144 0.93701 0.86821 0.80510 0.83229 0.79130 1.19710 1.20709 1.18500 1.21027 0.88007 0.95598 1.54260 0.89872 1.19757 0.95939 0.77090 0.97564 1.46156 1.04760 1.12552 1.67465 1.19543 0.84817 0.87550 0.80770 1.90748 1.55266 1.44815 1.50529 1.20963 0.82143 0.91350 0.76077 1.90784 1.54965 1.45757 1.44810 1.43307 1.08301 1.07096 1.71181 1.17630 0.93264 0.84294 0.93086 1.21017 0.97681 0.97465 1.01368 1.20681 0.98392 0.90456 0.94650 1.20041 1.00307 0.93530 1.10925 1.17969 0.75384 0.86382 0.74087 1.93167 1.48535 1.96843 1.77067 1.93238 1.94219 1.88950 1.39070 1.93249 1.63421 1.76484 1.82238 1.16993 0.89220 0.85255 0.93102 1.91598 1.78367 1.58396 1.81360 1.21290 1.03905 0.89781 1.03485 0.92032 0.94749 0.95201 0.75263 0.73000 0.83264 0.82847 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.96 55.43 0.77 -24.69 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 20.14 27.47 -169.99 -4.67 15.48 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.55 -14.42 9.83 -34.44 -0.34 -14.76 16 8 H 0.08 2.30 7.84 -52.48 -0.41 1.89 16 9 C 0.22 4.93 4.50 -5.19 -0.02 4.90 16 10 N -0.66 -12.58 5.54 -61.95 -0.34 -12.92 16 11 C 0.49 8.37 7.89 -11.64 -0.09 8.28 16 12 O -0.53 -9.89 16.48 5.49 0.09 -9.80 16 13 C 0.51 7.09 7.73 -11.64 -0.09 7.00 16 14 O -0.49 -7.59 13.91 5.47 0.08 -7.52 16 15 N -0.65 -6.71 5.32 -10.31 -0.05 -6.76 16 16 C 0.21 2.05 6.29 -83.76 -0.53 1.52 16 17 C -0.15 -1.07 9.97 -39.37 -0.39 -1.46 16 18 C -0.02 -0.16 9.42 -39.62 -0.37 -0.53 16 19 C -0.24 -2.27 5.38 -104.51 -0.56 -2.83 16 20 C 0.52 4.93 3.02 36.01 0.11 5.04 16 21 F -0.17 -1.48 15.97 2.25 0.04 -1.45 16 22 F -0.17 -1.79 17.05 2.25 0.04 -1.75 16 23 F -0.17 -1.86 17.05 2.25 0.04 -1.82 16 24 C 0.17 1.88 7.12 -39.45 -0.28 1.60 16 25 F -0.12 -1.42 16.45 2.25 0.04 -1.38 16 26 C -0.16 -1.80 8.67 -39.31 -0.34 -2.14 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 29 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 30 H 0.41 7.45 7.79 -40.82 -0.32 7.13 16 31 H 0.43 3.57 8.30 -40.82 -0.34 3.23 16 32 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.15 0.68 7.15 -52.49 -0.38 0.31 16 34 H 0.17 2.02 6.22 -52.49 -0.33 1.70 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -29.94 323.68 -4.23 -34.17 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -2.13 Total: 4.87 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -3.01 Total: 8.70 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.38 Total: -44.38 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.17 Total: -17.32 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.15 Total: -6.40 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.48 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.94 -4.23 -34.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861841835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.592 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds