Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00111 * 2 1 4 4 H 1.48509 * 109.46957 * 269.99954 * 3 2 1 5 5 H 1.48504 * 109.47165 * 29.99501 * 3 2 1 6 6 H 1.48493 * 109.47181 * 149.99972 * 3 2 1 7 7 C 1.37875 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99769 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00126 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47070 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00202 * 179.97438 * 10 9 7 12 12 O 1.21360 * 119.99513 * 359.97438 * 11 10 9 13 13 C 1.49343 * 120.00313 * 180.02562 * 11 10 9 14 14 O 1.21380 * 120.00117 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00313 * 179.97438 * 13 11 10 16 16 C 1.39721 * 120.00287 * 184.61627 * 15 13 11 17 17 C 1.38964 * 120.06245 * 144.89725 * 16 15 13 18 18 C 1.38089 * 119.97482 * 180.25486 * 17 16 15 19 19 C 1.38280 * 120.09745 * 359.46528 * 18 17 16 20 20 C 1.50699 * 119.93529 * 180.25661 * 19 18 17 21 21 F 1.39898 * 109.47234 * 0.25941 * 20 19 18 22 22 F 1.39895 * 109.47101 * 120.26319 * 20 19 18 23 23 F 1.39902 * 109.46762 * 240.25685 * 20 19 18 24 24 C 1.38504 * 120.12386 * 0.51913 * 19 18 17 25 25 F 1.35102 * 119.98173 * 179.74139 * 24 19 18 26 26 C 1.38337 * 120.02875 * 359.75526 * 24 19 18 27 27 H 0.97004 * 120.00096 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46805 * 59.99556 * 9 7 2 29 29 H 1.09001 * 109.46395 * 299.99459 * 9 7 2 30 30 H 0.97008 * 119.99837 * 359.97438 * 10 9 7 31 31 H 0.97006 * 119.99609 * 4.61443 * 15 13 11 32 32 H 1.08003 * 120.01544 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.94934 * 179.72608 * 18 17 16 34 34 H 1.07991 * 120.05106 * 180.02562 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5753 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1135 -1.8992 -0.0006 13 6 5.8227 -4.2296 -0.0008 14 8 5.0340 -5.1522 -0.0009 15 7 7.1478 -4.4760 -0.0014 16 6 7.6142 -5.7894 -0.0995 17 6 8.7839 -6.0624 -0.7983 18 6 9.2404 -7.3618 -0.8985 19 6 8.5412 -8.3909 -0.2950 20 6 9.0458 -9.8069 -0.4018 21 9 10.2291 -9.8253 -1.1479 22 9 9.2943 -10.3113 0.8792 23 9 8.0823 -10.5987 -1.0359 24 6 7.3750 -8.1234 0.4028 25 9 6.6914 -9.1318 0.9868 26 6 6.9100 -6.8244 0.5017 27 1 -0.4850 0.8401 0.0004 28 1 3.8745 -0.6808 0.8905 29 1 3.8752 -0.6797 -0.8895 30 1 3.3695 -3.3126 -0.0001 31 1 7.7777 -3.7414 0.0662 32 1 9.3334 -5.2592 -1.2667 33 1 10.1471 -7.5741 -1.4454 34 1 6.0010 -6.6153 1.0460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861841835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = -251.666730 kcal Electronic energy + Delta-G solvation = -27467.334568 eV Core-core repulsion = 22478.410422 eV Total energy + Delta-G solvation = -4988.924146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.31191 -50.26346 -48.74005 -48.73250 -42.30921 -40.58253 -39.37922 -36.84344 -35.99331 -34.44070 -32.31927 -31.87095 -30.35260 -27.62670 -25.82599 -24.59682 -23.84777 -22.90059 -21.65461 -20.45657 -19.79283 -19.60645 -19.52873 -19.11021 -18.65372 -17.82194 -17.51132 -17.06936 -16.93009 -16.77906 -16.72910 -15.98904 -15.82843 -15.69829 -15.58437 -15.44254 -15.14969 -15.00937 -14.93063 -14.87952 -14.55315 -14.42551 -14.34047 -14.09373 -13.78580 -13.24387 -13.09684 -12.97075 -12.69541 -12.58882 -11.91462 -11.88681 -11.70036 -10.93115 -10.86040 -10.20535 -10.16119 -9.76916 -8.39480 -6.49415 -0.64420 -0.11127 0.24567 1.05544 1.37509 1.39495 1.50089 1.50635 1.89548 2.19711 2.29163 2.44336 2.54463 2.76136 2.95736 2.97747 3.26686 3.30272 3.54812 3.79474 3.90354 4.16548 4.49182 4.64689 4.65544 4.73383 4.91462 4.93364 4.96219 5.11738 5.23623 5.46653 5.69700 6.01084 6.36841 6.48557 6.60960 6.85003 7.17134 8.75437 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.002163 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.358581 B =12941.187312 C =13499.639750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.024 3.976 3 Si 0.944 3.056 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.248 1.248 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.229 3.771 10 N -0.671 5.671 11 C 0.501 3.499 12 O -0.545 6.545 13 C 0.522 3.478 14 O -0.511 6.511 15 N -0.630 5.630 16 C 0.199 3.801 17 C -0.129 4.129 18 C -0.012 4.012 19 C -0.244 4.244 20 C 0.517 3.483 21 F -0.165 7.165 22 F -0.180 7.180 23 F -0.182 7.182 24 C 0.154 3.846 25 F -0.134 7.134 26 C -0.176 4.176 27 H 0.273 0.727 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.414 0.586 31 H 0.442 0.558 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.691 -15.459 -1.854 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.177 4.177 3 Si 0.766 3.234 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.106 3.894 10 N -0.321 5.321 11 C 0.281 3.719 12 O -0.425 6.425 13 C 0.304 3.696 14 O -0.385 6.385 15 N -0.279 5.279 16 C 0.103 3.897 17 C -0.149 4.149 18 C -0.030 4.030 19 C -0.247 4.247 20 C 0.462 3.538 21 F -0.146 7.146 22 F -0.161 7.161 23 F -0.164 7.164 24 C 0.134 3.866 25 F -0.112 7.112 26 C -0.197 4.197 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.250 0.750 31 H 0.284 0.716 32 H 0.206 0.794 33 H 0.205 0.795 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 24.428 -15.336 -1.835 28.901 hybrid contribution -0.747 0.130 0.349 0.835 sum 23.680 -15.206 -1.486 28.181 Atomic orbital electron populations 1.70003 1.08057 1.28815 1.50233 1.25698 0.95596 1.03083 0.93290 0.85765 0.79485 0.78449 0.79654 1.18724 1.20286 1.17194 1.21264 0.90050 0.94589 1.53468 0.92880 1.19392 0.93480 0.79123 0.97360 1.45981 1.05997 1.11268 1.68851 1.19907 0.83739 0.88949 0.79309 1.90734 1.55350 1.45810 1.50583 1.20222 0.83342 0.89364 0.76638 1.90804 1.55842 1.45633 1.46213 1.43050 1.06921 1.08059 1.69835 1.17772 0.94407 0.83186 0.94312 1.21397 0.95926 0.98465 0.99130 1.21108 0.98775 0.89627 0.93507 1.20183 0.99847 0.93978 1.10710 1.18010 0.75503 0.86399 0.73858 1.93184 1.47871 1.96803 1.76758 1.93226 1.94254 1.89079 1.39586 1.93231 1.63923 1.76821 1.82388 1.17140 0.90160 0.84949 0.94387 1.91556 1.78875 1.58915 1.81841 1.21186 1.03756 0.90540 1.04226 0.91778 0.94975 0.95046 0.74993 0.71563 0.79426 0.79516 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.96 21.45 0.30 -54.45 16 2 C 0.02 1.29 5.47 84.65 0.46 1.76 16 3 Si 0.94 41.15 27.47 68.60 1.88 43.04 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.25 -10.25 6.54 99.48 0.65 -9.60 16 7 C -0.56 -29.65 9.83 25.60 0.25 -29.40 16 8 H 0.05 3.07 7.84 -2.91 -0.02 3.05 16 9 C 0.23 10.27 4.50 85.63 0.38 10.66 16 10 N -0.67 -25.54 5.54 -468.25 -2.59 -28.13 16 11 C 0.50 16.42 7.89 87.24 0.69 17.10 16 12 O -0.55 -19.16 16.48 -3.28 -0.05 -19.21 16 13 C 0.52 13.91 7.73 87.24 0.67 14.58 16 14 O -0.51 -15.78 13.91 -3.34 -0.05 -15.82 16 15 N -0.63 -11.53 5.32 -304.87 -1.62 -13.15 16 16 C 0.20 3.33 6.29 38.21 0.24 3.57 16 17 C -0.13 -1.22 9.97 22.41 0.22 -1.00 16 18 C -0.01 -0.12 9.42 22.24 0.21 0.09 16 19 C -0.24 -4.03 5.38 -19.79 -0.11 -4.14 16 20 C 0.52 9.06 3.02 71.24 0.22 9.27 16 21 F -0.16 -2.35 15.97 44.97 0.72 -1.63 16 22 F -0.18 -3.56 17.05 44.97 0.77 -2.79 16 23 F -0.18 -3.78 17.05 44.97 0.77 -3.01 16 24 C 0.15 3.25 7.12 22.36 0.16 3.41 16 25 F -0.13 -3.28 16.45 44.97 0.74 -2.54 16 26 C -0.18 -3.79 8.67 22.44 0.19 -3.59 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 29 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 30 H 0.41 15.35 7.79 -92.70 -0.72 14.62 16 31 H 0.44 5.93 8.30 -92.70 -0.77 5.16 16 32 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.19 0.65 7.15 -2.91 -0.02 0.63 16 34 H 0.15 3.71 6.22 -2.92 -0.02 3.69 16 Total: -1.00 -66.06 323.68 4.14 -61.92 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -0.32 Total: 13.46 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 3.60 Total: 22.32 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -3.92 Total: -95.73 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.10 Total: -35.03 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 2.99 Total: -9.97 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.04 kcal Total: -66.06 4.14 -61.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861841835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.748 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds