Wall clock time and date at job start Tue Mar 31 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47560 * 2 1 4 4 C 1.34228 * 117.00047 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00047 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99796 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.46972 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.46813 * 55.13906 * 7 6 4 9 9 C 1.50701 * 109.47052 * 175.13869 * 7 6 4 10 10 H 1.07999 * 119.99767 * 245.33112 * 9 7 6 11 11 C 1.37874 * 120.00030 * 65.33836 * 9 7 6 12 12 N 1.31518 * 120.00103 * 6.00289 * 11 9 7 13 13 Si 1.86798 * 120.00107 * 186.00844 * 11 9 7 14 14 H 1.48494 * 109.47545 * 84.98647 * 13 11 9 15 15 H 1.48506 * 109.46897 * 204.98785 * 13 11 9 16 16 H 1.48504 * 109.46872 * 324.98229 * 13 11 9 17 17 O 1.45196 * 109.47603 * 295.14239 * 7 6 4 18 18 C 1.34224 * 117.00569 * 149.99693 * 17 7 6 19 19 O 1.20827 * 119.99898 * 0.02562 * 18 17 7 20 20 C 1.50702 * 120.00449 * 179.97438 * 18 17 7 21 21 S 1.81543 * 109.53840 * 329.59755 * 20 18 17 22 22 C 1.81298 * 102.87218 * 182.73633 * 21 20 18 23 23 C 1.52438 * 110.07867 * 62.59821 * 22 21 20 24 24 C 1.52444 * 110.81027 * 287.36308 * 23 22 21 25 25 S 1.81306 * 110.07409 * 72.63461 * 24 23 22 26 26 H 1.08999 * 109.46802 * 300.00006 * 1 2 3 27 27 H 1.09008 * 109.47050 * 59.99396 * 1 2 3 28 28 H 1.09000 * 109.47828 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46802 * 239.99994 * 2 1 3 30 30 H 1.09001 * 109.46695 * 120.00519 * 2 1 3 31 31 H 1.09002 * 109.46966 * 60.00707 * 6 4 3 32 32 H 1.08991 * 109.47452 * 300.00454 * 6 4 3 33 33 H 0.96991 * 120.00076 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.53152 * 89.83802 * 20 18 17 35 35 H 1.09004 * 109.37074 * 302.41569 * 22 21 20 36 36 H 1.08999 * 109.26973 * 182.72479 * 22 21 20 37 37 H 1.09000 * 109.21004 * 167.02238 * 23 22 21 38 38 H 1.09003 * 109.17780 * 47.68605 * 23 22 21 39 39 H 1.08997 * 109.36825 * 312.44952 * 24 23 22 40 40 H 1.09001 * 109.26815 * 192.75720 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 0.0001 8 1 5.7808 2.2511 -0.8429 9 6 6.0246 4.2445 -0.1208 10 1 6.5879 4.5205 -0.9999 11 6 5.8323 5.1613 0.8908 12 7 5.2499 4.7923 2.0108 13 14 6.3989 6.9276 0.6707 14 1 5.3467 7.7005 -0.0367 15 1 6.6498 7.5364 2.0018 16 1 7.6508 6.9500 -0.1277 17 8 5.9016 2.2514 1.2396 18 6 7.0461 1.5517 1.1935 19 8 7.6499 1.4491 0.1519 20 6 7.5788 0.8951 2.4410 21 16 7.0880 1.8654 3.8947 22 6 7.8811 0.9756 5.2608 23 6 9.3962 1.0059 5.0954 24 6 9.8355 0.0889 3.9597 25 16 9.3909 0.8206 2.3616 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.5846 3.4699 0.8896 32 1 3.5854 3.4689 -0.8903 33 1 5.1143 5.4373 2.7223 34 1 7.1756 -0.1144 2.5220 35 1 7.5386 -0.0592 5.2654 36 1 7.6108 1.4500 6.2041 37 1 9.8648 0.6776 6.0232 38 1 9.7120 2.0258 4.8756 39 1 9.3427 -0.8777 4.0644 40 1 10.9158 -0.0491 4.0062 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870617378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:35 Heat of formation + Delta-G solvation = -168.294586 kcal Electronic energy + Delta-G solvation = -25245.044116 eV Core-core repulsion = 21470.956374 eV Total energy + Delta-G solvation = -3774.087742 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88160 -39.01505 -36.25449 -35.28377 -35.09793 -33.01442 -31.63109 -30.62508 -29.55868 -27.51775 -26.20129 -23.33637 -22.37011 -21.82704 -20.48552 -19.71720 -17.52185 -17.19629 -16.81203 -16.31064 -16.21764 -15.98497 -15.45686 -15.39962 -15.00509 -14.66707 -14.41201 -13.92690 -13.65376 -13.43131 -13.07820 -13.04673 -12.73643 -12.34380 -12.24173 -11.92349 -11.84243 -11.77550 -11.49551 -11.46631 -11.29736 -10.95627 -10.89408 -10.75970 -10.23522 -10.17625 -9.93546 -9.76195 -9.58593 -9.43772 -9.39107 -8.79093 -8.64131 -7.65935 -7.08863 -6.16554 -4.34167 1.37279 1.64085 2.32842 2.80345 2.95752 3.22226 3.28427 3.33575 3.37843 3.43152 3.73189 4.33088 4.51464 4.65623 5.03626 5.06152 5.10771 5.14886 5.18335 5.24133 5.30281 5.35747 5.44241 5.58063 5.67531 5.71863 5.87322 5.90457 6.02589 6.05276 6.27985 6.51823 6.82071 6.94711 7.18249 7.71959 7.85853 7.97351 8.46101 8.66120 9.00522 9.40211 10.85031 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.005271 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.531953 B = 5310.944209 C = 7135.882469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.458 3.542 5 O -0.516 6.516 6 C -0.097 4.097 7 C 0.230 3.770 8 H 0.046 0.954 9 C -0.554 4.554 10 H 0.070 0.930 11 C 0.085 3.915 12 N -0.840 5.840 13 Si 0.893 3.107 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.272 1.272 17 O -0.301 6.301 18 C 0.502 3.498 19 O -0.502 6.502 20 C -0.052 4.052 21 S -0.115 6.115 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.112 4.112 25 S -0.167 6.167 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -8.583 6.298 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.303 3.697 5 O -0.404 6.404 6 C -0.135 4.135 7 C 0.178 3.822 8 H 0.064 0.936 9 C -0.591 4.591 10 H 0.088 0.912 11 C -0.124 4.124 12 N -0.473 5.473 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.209 1.209 16 H -0.197 1.197 17 O -0.215 6.215 18 C 0.341 3.659 19 O -0.393 6.393 20 C -0.292 4.292 21 S 0.111 5.889 22 C -0.281 4.281 23 C -0.164 4.164 24 C -0.261 4.261 25 S 0.058 5.942 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.226 -7.622 5.366 9.402 hybrid contribution 0.219 -0.891 0.924 1.303 sum -1.006 -8.514 6.290 10.633 Atomic orbital electron populations 1.21779 0.93254 1.02343 1.03351 1.22862 0.94880 0.81737 1.02050 1.86575 1.26043 1.31054 1.84678 1.24862 0.79517 0.94247 0.71102 1.90590 1.60285 1.43651 1.45869 1.21826 0.96743 0.88271 1.06630 1.20149 0.87890 0.92816 0.81375 0.93605 1.21268 1.37084 0.94879 1.05862 0.91189 1.25076 0.93793 0.98945 0.94571 1.70004 1.38991 1.34418 1.03913 0.86583 0.79480 0.84196 0.77734 1.20221 1.20909 1.19670 1.86660 1.35141 1.58068 1.41586 1.20922 0.81808 0.76751 0.86381 1.90596 1.58885 1.58876 1.30895 1.24893 0.98878 1.05267 1.00149 1.88358 1.66747 1.37342 0.96493 1.23674 0.98133 1.04039 1.02227 1.21745 0.94704 1.01753 0.98150 1.23567 1.05571 1.01226 0.95725 1.87403 1.02374 1.82633 1.21760 0.91580 0.91683 0.90836 0.91852 0.91740 0.85276 0.87521 0.92336 0.85716 0.90255 0.86879 0.90327 0.88994 0.90001 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.61 10.22 -39.25 -0.40 -7.01 16 4 C 0.46 9.65 7.84 36.01 0.28 9.93 16 5 O -0.52 -12.02 15.17 -23.98 -0.36 -12.38 16 6 C -0.10 -2.14 5.31 -27.88 -0.15 -2.29 16 7 C 0.23 5.87 1.65 -27.88 -0.05 5.82 16 8 H 0.05 1.23 6.97 -51.93 -0.36 0.87 16 9 C -0.55 -14.84 8.88 -34.44 -0.31 -15.15 16 10 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 11 C 0.09 2.21 5.23 -17.82 -0.09 2.12 16 12 N -0.84 -21.85 11.21 55.43 0.62 -21.23 16 13 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 O -0.30 -7.70 7.24 -44.47 -0.32 -8.03 16 18 C 0.50 12.36 7.40 36.01 0.27 12.63 16 19 O -0.50 -13.48 15.47 -18.75 -0.29 -13.77 16 20 C -0.05 -1.02 3.46 36.01 0.12 -0.90 16 21 S -0.11 -2.13 20.86 -106.56 -2.22 -4.35 16 22 C -0.13 -1.64 6.22 36.87 0.23 -1.41 16 23 C -0.12 -1.36 5.58 -27.30 -0.15 -1.51 16 24 C -0.11 -1.32 6.22 36.87 0.23 -1.09 16 25 S -0.17 -2.95 20.86 -106.56 -2.22 -5.17 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.13 3.01 6.87 -51.93 -0.36 2.66 16 32 H 0.11 2.12 8.14 -51.93 -0.42 1.69 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.13 2.23 8.14 -51.92 -0.42 1.80 16 35 H 0.08 0.88 7.99 -51.92 -0.42 0.47 16 36 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 39 H 0.08 0.87 7.99 -51.92 -0.42 0.45 16 40 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -31.42 361.57 -9.51 -40.93 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.74 Total: 2.21 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 1.00 Total: 8.02 kcal Atomic # 7 Polarization: -21.85 SS G_CDS: 0.62 Total: -21.23 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.38 Total: -41.18 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -4.45 Total: -9.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.42 -9.51 -40.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.363 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds