Wall clock time and date at job start Tue Mar 31 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47560 * 2 1 4 4 C 1.34228 * 117.00047 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00047 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99796 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.46972 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.46813 * 55.13906 * 7 6 4 9 9 C 1.50701 * 109.47052 * 175.13869 * 7 6 4 10 10 H 1.07999 * 119.99767 * 245.33112 * 9 7 6 11 11 C 1.37874 * 120.00030 * 65.33836 * 9 7 6 12 12 N 1.31518 * 120.00103 * 6.00289 * 11 9 7 13 13 Si 1.86798 * 120.00107 * 186.00844 * 11 9 7 14 14 H 1.48494 * 109.47545 * 84.98647 * 13 11 9 15 15 H 1.48506 * 109.46897 * 204.98785 * 13 11 9 16 16 H 1.48504 * 109.46872 * 324.98229 * 13 11 9 17 17 O 1.45196 * 109.47603 * 295.14239 * 7 6 4 18 18 C 1.34224 * 117.00569 * 149.99693 * 17 7 6 19 19 O 1.20827 * 119.99898 * 0.02562 * 18 17 7 20 20 C 1.50702 * 120.00449 * 179.97438 * 18 17 7 21 21 S 1.81543 * 109.53840 * 329.59755 * 20 18 17 22 22 C 1.81298 * 102.87218 * 182.73633 * 21 20 18 23 23 C 1.52438 * 110.07867 * 62.59821 * 22 21 20 24 24 C 1.52444 * 110.81027 * 287.36308 * 23 22 21 25 25 S 1.81306 * 110.07409 * 72.63461 * 24 23 22 26 26 H 1.08999 * 109.46802 * 300.00006 * 1 2 3 27 27 H 1.09008 * 109.47050 * 59.99396 * 1 2 3 28 28 H 1.09000 * 109.47828 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46802 * 239.99994 * 2 1 3 30 30 H 1.09001 * 109.46695 * 120.00519 * 2 1 3 31 31 H 1.09002 * 109.46966 * 60.00707 * 6 4 3 32 32 H 1.08991 * 109.47452 * 300.00454 * 6 4 3 33 33 H 0.96991 * 120.00076 * 180.02562 * 12 11 9 34 34 H 1.09007 * 109.53152 * 89.83802 * 20 18 17 35 35 H 1.09004 * 109.37074 * 302.41569 * 22 21 20 36 36 H 1.08999 * 109.26973 * 182.72479 * 22 21 20 37 37 H 1.09000 * 109.21004 * 167.02238 * 23 22 21 38 38 H 1.09003 * 109.17780 * 47.68605 * 23 22 21 39 39 H 1.08997 * 109.36825 * 312.44952 * 24 23 22 40 40 H 1.09001 * 109.26815 * 192.75720 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 0.0001 8 1 5.7808 2.2511 -0.8429 9 6 6.0246 4.2445 -0.1208 10 1 6.5879 4.5205 -0.9999 11 6 5.8323 5.1613 0.8908 12 7 5.2499 4.7923 2.0108 13 14 6.3989 6.9276 0.6707 14 1 5.3467 7.7005 -0.0367 15 1 6.6498 7.5364 2.0018 16 1 7.6508 6.9500 -0.1277 17 8 5.9016 2.2514 1.2396 18 6 7.0461 1.5517 1.1935 19 8 7.6499 1.4491 0.1519 20 6 7.5788 0.8951 2.4410 21 16 7.0880 1.8654 3.8947 22 6 7.8811 0.9756 5.2608 23 6 9.3962 1.0059 5.0954 24 6 9.8355 0.0889 3.9597 25 16 9.3909 0.8206 2.3616 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.5846 3.4699 0.8896 32 1 3.5854 3.4689 -0.8903 33 1 5.1143 5.4373 2.7223 34 1 7.1756 -0.1144 2.5220 35 1 7.5386 -0.0592 5.2654 36 1 7.6108 1.4500 6.2041 37 1 9.8648 0.6776 6.0232 38 1 9.7120 2.0258 4.8756 39 1 9.3427 -0.8777 4.0644 40 1 10.9158 -0.0491 4.0062 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870617378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:35 Heat of formation + Delta-G solvation = -184.997878 kcal Electronic energy + Delta-G solvation = -25245.768425 eV Core-core repulsion = 21470.956374 eV Total energy + Delta-G solvation = -3774.812051 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57265 -40.88232 -37.92438 -37.15075 -36.04144 -34.99509 -32.99080 -32.25865 -31.18374 -28.49260 -28.11491 -24.87571 -23.70030 -23.04600 -22.10937 -21.51710 -19.30016 -18.88865 -18.36295 -18.00898 -17.71094 -17.54940 -17.13388 -16.78774 -16.72164 -16.42975 -15.72372 -15.30130 -14.92312 -14.68799 -14.47781 -14.35050 -14.18188 -13.84821 -13.69894 -13.41677 -13.38678 -12.99072 -12.80674 -12.78824 -12.68981 -12.65398 -12.47065 -12.43771 -12.11680 -11.57237 -11.51652 -11.49310 -11.39932 -10.96489 -10.81558 -10.70749 -10.63692 -9.04552 -8.50154 -8.15552 -6.41292 0.01956 0.18162 1.17192 1.25735 1.43018 1.46217 1.53765 1.56455 1.61210 1.78057 2.01152 2.42152 3.12494 3.51897 3.62678 3.75732 3.83330 3.97321 4.00645 4.12671 4.32303 4.34242 4.35871 4.43215 4.44869 4.52116 4.76077 4.81327 4.85487 4.92772 4.96292 5.12322 5.15104 5.24832 5.48268 5.65572 5.91728 5.98442 6.58641 6.82496 7.04788 7.36008 8.85108 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.009132 B = 0.005271 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.531953 B = 5310.944209 C = 7135.882469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.466 3.534 5 O -0.543 6.543 6 C -0.089 4.089 7 C 0.229 3.771 8 H 0.017 0.983 9 C -0.583 4.583 10 H 0.052 0.948 11 C 0.055 3.945 12 N -0.849 5.849 13 Si 0.950 3.050 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.284 1.284 17 O -0.306 6.306 18 C 0.487 3.513 19 O -0.538 6.538 20 C -0.035 4.035 21 S -0.191 6.191 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.091 4.091 25 S -0.229 6.229 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.270 0.730 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -9.418 8.758 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.311 3.689 5 O -0.434 6.434 6 C -0.126 4.126 7 C 0.176 3.824 8 H 0.035 0.965 9 C -0.619 4.619 10 H 0.070 0.930 11 C -0.153 4.153 12 N -0.482 5.482 13 Si 0.775 3.225 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.209 1.209 17 O -0.219 6.219 18 C 0.329 3.671 19 O -0.431 6.431 20 C -0.274 4.274 21 S 0.034 5.966 22 C -0.257 4.257 23 C -0.160 4.160 24 C -0.239 4.239 25 S -0.004 6.004 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.515 -8.461 7.839 11.633 hybrid contribution 0.329 -0.760 0.260 0.868 sum -1.187 -9.221 8.099 12.330 Atomic orbital electron populations 1.21808 0.89782 1.04457 1.03773 1.23298 0.97528 0.79620 1.02089 1.86544 1.23887 1.33608 1.83900 1.24472 0.80476 0.93328 0.70576 1.90576 1.61232 1.44289 1.47277 1.21600 0.94693 0.89333 1.06989 1.20083 0.89833 0.91789 0.80726 0.96460 1.21308 1.38404 0.96108 1.06067 0.92960 1.25596 0.93746 1.01922 0.94081 1.70083 1.38801 1.35313 1.04011 0.85712 0.78821 0.80266 0.77702 1.18522 1.20266 1.20922 1.86658 1.35737 1.58335 1.41205 1.21871 0.81121 0.76222 0.87931 1.90553 1.59530 1.60172 1.32796 1.24608 0.99905 1.04912 0.97981 1.88453 1.68758 1.40051 0.99330 1.23812 0.98468 1.04253 0.99138 1.21738 0.93712 1.00846 0.99694 1.23768 1.07249 1.01494 0.91362 1.87536 1.01145 1.83901 1.27846 0.91340 0.91066 0.87825 0.91653 0.92022 0.86278 0.85667 0.92066 0.84448 0.88116 0.84645 0.85530 0.90755 0.87869 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.29 71.98 0.74 -1.93 16 2 C 0.05 1.35 6.19 71.98 0.45 1.79 16 3 O -0.36 -13.04 10.22 -51.40 -0.53 -13.57 16 4 C 0.47 20.14 7.84 71.24 0.56 20.70 16 5 O -0.54 -26.24 15.17 26.98 0.41 -25.83 16 6 C -0.09 -4.06 5.31 29.85 0.16 -3.90 16 7 C 0.23 12.29 1.65 29.85 0.05 12.34 16 8 H 0.02 1.00 6.97 -2.38 -0.02 0.98 16 9 C -0.58 -32.64 8.88 25.60 0.23 -32.41 16 10 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 11 C 0.05 2.90 5.23 84.65 0.44 3.34 16 12 N -0.85 -44.93 11.21 21.45 0.24 -44.69 16 13 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 14 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 O -0.31 -16.42 7.24 -46.36 -0.34 -16.76 16 18 C 0.49 25.20 7.40 71.24 0.53 25.72 16 19 O -0.54 -30.71 15.47 21.96 0.34 -30.37 16 20 C -0.03 -1.40 3.46 71.24 0.25 -1.15 16 21 S -0.19 -7.05 20.86 -54.56 -1.14 -8.18 16 22 C -0.11 -2.32 6.22 71.80 0.45 -1.88 16 23 C -0.12 -2.15 5.58 30.22 0.17 -1.98 16 24 C -0.09 -1.82 6.22 71.80 0.45 -1.37 16 25 S -0.23 -8.07 20.86 -54.56 -1.14 -9.20 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 30 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 31 H 0.12 5.72 6.87 -2.39 -0.02 5.71 16 32 H 0.13 5.11 8.14 -2.39 -0.02 5.10 16 33 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.14 4.97 8.14 -2.39 -0.02 4.95 16 35 H 0.10 1.80 7.99 -2.39 -0.02 1.78 16 36 H 0.14 2.37 8.14 -2.40 -0.02 2.35 16 37 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.69 8.05 -2.39 -0.02 1.67 16 39 H 0.10 1.71 7.99 -2.39 -0.02 1.69 16 40 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -73.46 361.57 5.38 -68.08 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.04 Total: 16.90 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 4.46 Total: 19.28 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.24 Total: -44.69 kcal Atomic # 8 Polarization: -86.40 SS G_CDS: -0.11 Total: -86.52 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -15.11 SS G_CDS: -2.28 Total: -17.39 kcal Total: -73.46 5.38 -68.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.921 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds