Wall clock time and date at job start Tue Mar 31 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47391 * 2 1 4 4 C 1.50704 * 109.47285 * 119.99790 * 2 1 3 5 5 H 1.07997 * 119.99669 * 120.00027 * 4 2 1 6 6 C 1.37878 * 119.99812 * 300.00198 * 4 2 1 7 7 N 1.31516 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99637 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47134 * 89.99748 * 8 6 4 10 10 H 1.48504 * 109.46513 * 209.99776 * 8 6 4 11 11 H 1.48505 * 109.47033 * 329.99517 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99810 * 2 1 3 13 13 C 1.34782 * 120.00059 * 84.99864 * 12 2 1 14 14 O 1.21366 * 119.99870 * 0.02562 * 13 12 2 15 15 C 1.49330 * 120.00341 * 180.02562 * 13 12 2 16 16 O 1.21393 * 119.99432 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00337 * 180.02562 * 15 13 12 18 18 C 1.39893 * 120.00052 * 185.52752 * 17 15 13 19 19 C 1.38893 * 120.04080 * 24.83332 * 18 17 15 20 20 C 1.38301 * 119.98865 * 180.02562 * 19 18 17 21 21 F 1.35101 * 119.96776 * 179.97438 * 20 19 18 22 22 C 1.38656 * 120.06834 * 0.02562 * 20 19 18 23 23 F 1.35096 * 119.96213 * 179.97438 * 22 20 19 24 24 C 1.38610 * 120.07873 * 359.97438 * 22 20 19 25 25 F 1.35098 * 119.98976 * 180.02562 * 24 22 20 26 26 C 1.38481 * 120.00903 * 359.97438 * 24 22 20 27 27 F 1.35110 * 120.02879 * 180.27775 * 26 24 22 28 28 H 1.09004 * 109.47152 * 300.00196 * 1 2 3 29 29 H 1.09003 * 109.47211 * 59.99714 * 1 2 3 30 30 H 1.08996 * 109.47258 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99580 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00184 * 265.00245 * 12 2 1 33 33 H 0.97002 * 120.00111 * 5.53169 * 17 15 13 34 34 H 1.08002 * 120.00401 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3226 -1.1194 4.0080 9 1 3.6305 -0.5438 4.4118 10 1 1.3444 -0.9488 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8588 1.1594 -2.4116 15 6 2.6443 -0.7224 -3.5766 16 8 2.9321 -1.9004 -3.5222 17 7 2.7735 -0.0500 -4.7374 18 6 3.1278 -0.7330 -5.9057 19 6 2.8546 -2.0893 -6.0282 20 6 3.2059 -2.7636 -7.1835 21 9 2.9404 -4.0829 -7.3020 22 6 3.8312 -2.0872 -8.2198 23 9 4.1739 -2.7481 -9.3471 24 6 4.1053 -0.7337 -8.1005 25 9 4.7142 -0.0763 -9.1116 26 6 3.7540 -0.0551 -6.9456 27 9 4.0158 1.2655 -6.8312 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7095 1.1619 3.4844 32 1 2.2490 -1.6318 -1.1526 33 1 2.6208 0.9076 -4.7628 34 1 2.3686 -2.6174 -5.2211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873821905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:05 Heat of formation + Delta-G solvation = -209.660350 kcal Electronic energy + Delta-G solvation = -27823.504407 eV Core-core repulsion = 22836.401794 eV Total energy + Delta-G solvation = -4987.102613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.31003 -49.91716 -49.33268 -48.79557 -41.24295 -39.25665 -38.07473 -35.65602 -34.82462 -32.56293 -30.87243 -30.09290 -29.25778 -25.60676 -25.34067 -24.12686 -23.18789 -21.23957 -20.13729 -19.51488 -18.97509 -18.72784 -18.25924 -17.51060 -17.10772 -16.85394 -16.68498 -16.30125 -16.15227 -15.78337 -15.63416 -15.57499 -15.27651 -15.19324 -14.96419 -14.81799 -14.45353 -13.92236 -13.78973 -13.40948 -13.04153 -12.61252 -12.48581 -12.43094 -11.92718 -11.52114 -11.22460 -11.10669 -10.94034 -10.84970 -10.45158 -10.36448 -9.49610 -9.34489 -9.24886 -8.79861 -8.72911 -8.30417 -6.26512 -4.36847 -0.07116 0.03237 1.39648 1.97647 2.42708 2.70557 3.18391 3.19384 3.25550 3.27557 3.37742 3.50778 3.59356 3.74296 3.89080 4.21838 4.28172 4.65817 4.81618 4.92731 5.06940 5.11177 5.36940 5.56979 6.04110 6.52778 6.61122 6.70525 6.89354 7.01587 7.16554 7.40543 7.52959 7.68268 7.93960 8.23144 8.42722 8.71244 9.30809 10.79488 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002494 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.469845 B =11222.065420 C =11900.827246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.056 0.944 4 C -0.540 4.540 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.662 5.662 13 C 0.496 3.504 14 O -0.528 6.528 15 C 0.514 3.486 16 O -0.492 6.492 17 N -0.642 5.642 18 C 0.180 3.820 19 C -0.128 4.128 20 C 0.122 3.878 21 F -0.108 7.108 22 C 0.038 3.962 23 F -0.109 7.109 24 C 0.091 3.909 25 F -0.104 7.104 26 C 0.055 3.945 27 F -0.109 7.109 28 H 0.096 0.904 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.404 0.596 33 H 0.434 0.566 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -4.149 -19.580 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.074 0.926 4 C -0.578 4.578 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.311 5.311 13 C 0.274 3.726 14 O -0.406 6.406 15 C 0.298 3.702 16 O -0.364 6.364 17 N -0.289 5.289 18 C 0.081 3.919 19 C -0.149 4.149 20 C 0.101 3.899 21 F -0.086 7.086 22 C 0.016 3.984 23 F -0.088 7.088 24 C 0.069 3.931 25 F -0.082 7.082 26 C 0.031 3.969 27 F -0.087 7.087 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.275 0.725 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.514 -3.997 -19.339 20.058 hybrid contribution 0.593 -0.361 0.308 0.759 sum 4.107 -4.358 -19.031 19.951 Atomic orbital electron populations 1.22111 0.97631 0.99694 1.01362 1.19045 0.91562 0.94184 0.79097 0.92617 1.21171 1.33048 1.13642 0.89935 0.91655 1.24875 0.94583 0.94915 0.99142 1.69884 1.35504 1.22298 1.24240 0.86379 0.78645 0.79916 0.81810 1.20434 1.20964 1.19674 1.46556 1.60834 1.14631 1.09098 1.19406 0.81670 0.87328 0.84201 1.90774 1.50632 1.14929 1.84284 1.21262 0.77228 0.87223 0.84534 1.90720 1.45549 1.15591 1.84573 1.43226 1.66468 1.13945 1.05240 1.17142 0.96515 0.91813 0.86440 1.21305 1.02373 0.92977 0.98290 1.16985 1.00173 0.79441 0.93348 1.91614 1.91384 1.29651 1.95944 1.17156 1.06470 0.89018 0.85802 1.91589 1.90179 1.79700 1.47304 1.16769 1.01104 0.88773 0.86475 1.91610 1.79939 1.79973 1.56691 1.16853 1.05373 0.79991 0.94668 1.91598 1.91919 1.29188 1.95989 0.88594 0.96392 0.94972 0.92335 0.76168 0.72537 0.79560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.26 37.16 0.34 -3.06 16 2 C 0.26 6.13 2.56 -69.08 -0.18 5.95 16 3 H 0.06 1.48 7.58 -51.92 -0.39 1.09 16 4 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 5 H 0.07 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -23.49 11.32 55.43 0.63 -22.86 16 8 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 N -0.66 -12.74 5.06 -55.40 -0.28 -13.02 16 13 C 0.50 8.72 7.85 -11.64 -0.09 8.63 16 14 O -0.53 -10.48 16.15 5.48 0.09 -10.39 16 15 C 0.51 7.20 7.69 -11.64 -0.09 7.11 16 16 O -0.49 -7.17 13.64 5.46 0.07 -7.09 16 17 N -0.64 -7.29 5.29 -10.24 -0.05 -7.35 16 18 C 0.18 1.84 6.43 -83.64 -0.54 1.30 16 19 C -0.13 -1.28 8.69 -39.32 -0.34 -1.62 16 20 C 0.12 1.17 7.30 -39.40 -0.29 0.89 16 21 F -0.11 -1.11 17.18 2.25 0.04 -1.07 16 22 C 0.04 0.37 7.31 -39.29 -0.29 0.08 16 23 F -0.11 -1.13 17.09 2.25 0.04 -1.10 16 24 C 0.09 0.88 7.31 -39.35 -0.29 0.59 16 25 F -0.10 -1.07 17.09 2.25 0.04 -1.03 16 26 C 0.05 0.53 7.31 -39.20 -0.29 0.25 16 27 F -0.11 -1.11 16.72 2.25 0.04 -1.07 16 28 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.40 7.09 8.01 -40.82 -0.33 6.77 16 33 H 0.43 4.52 7.93 -40.82 -0.32 4.20 16 34 H 0.19 1.98 5.78 -52.49 -0.30 1.68 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -26.67 323.83 -4.02 -30.69 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.05 Total: 6.68 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -2.44 Total: 7.97 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.29 Total: -43.23 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.16 Total: -17.49 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.15 Total: -4.27 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.67 -4.02 -30.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873821905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.971 kcal (2) G-P(sol) polarization free energy of solvation -26.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds