Wall clock time and date at job start Tue Mar 31 2020 18:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47391 * 2 1 4 4 C 1.50704 * 109.47285 * 119.99790 * 2 1 3 5 5 H 1.07997 * 119.99669 * 120.00027 * 4 2 1 6 6 C 1.37878 * 119.99812 * 300.00198 * 4 2 1 7 7 N 1.31516 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99637 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47134 * 89.99748 * 8 6 4 10 10 H 1.48504 * 109.46513 * 209.99776 * 8 6 4 11 11 H 1.48505 * 109.47033 * 329.99517 * 8 6 4 12 12 N 1.46499 * 109.47258 * 239.99810 * 2 1 3 13 13 C 1.34782 * 120.00059 * 84.99864 * 12 2 1 14 14 O 1.21366 * 119.99870 * 0.02562 * 13 12 2 15 15 C 1.49330 * 120.00341 * 180.02562 * 13 12 2 16 16 O 1.21393 * 119.99432 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00337 * 180.02562 * 15 13 12 18 18 C 1.39893 * 120.00052 * 185.52752 * 17 15 13 19 19 C 1.38893 * 120.04080 * 24.83332 * 18 17 15 20 20 C 1.38301 * 119.98865 * 180.02562 * 19 18 17 21 21 F 1.35101 * 119.96776 * 179.97438 * 20 19 18 22 22 C 1.38656 * 120.06834 * 0.02562 * 20 19 18 23 23 F 1.35096 * 119.96213 * 179.97438 * 22 20 19 24 24 C 1.38610 * 120.07873 * 359.97438 * 22 20 19 25 25 F 1.35098 * 119.98976 * 180.02562 * 24 22 20 26 26 C 1.38481 * 120.00903 * 359.97438 * 24 22 20 27 27 F 1.35110 * 120.02879 * 180.27775 * 26 24 22 28 28 H 1.09004 * 109.47152 * 300.00196 * 1 2 3 29 29 H 1.09003 * 109.47211 * 59.99714 * 1 2 3 30 30 H 1.08996 * 109.47258 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99580 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00184 * 265.00245 * 12 2 1 33 33 H 0.97002 * 120.00111 * 5.53169 * 17 15 13 34 34 H 1.08002 * 120.00401 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3226 -1.1194 4.0080 9 1 3.6305 -0.5438 4.4118 10 1 1.3444 -0.9488 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8588 1.1594 -2.4116 15 6 2.6443 -0.7224 -3.5766 16 8 2.9321 -1.9004 -3.5222 17 7 2.7735 -0.0500 -4.7374 18 6 3.1278 -0.7330 -5.9057 19 6 2.8546 -2.0893 -6.0282 20 6 3.2059 -2.7636 -7.1835 21 9 2.9404 -4.0829 -7.3020 22 6 3.8312 -2.0872 -8.2198 23 9 4.1739 -2.7481 -9.3471 24 6 4.1053 -0.7337 -8.1005 25 9 4.7142 -0.0763 -9.1116 26 6 3.7540 -0.0551 -6.9456 27 9 4.0158 1.2655 -6.8312 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7095 1.1619 3.4844 32 1 2.2490 -1.6318 -1.1526 33 1 2.6208 0.9076 -4.7628 34 1 2.3686 -2.6174 -5.2211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873821905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:05 Heat of formation + Delta-G solvation = -226.174124 kcal Electronic energy + Delta-G solvation = -27824.220498 eV Core-core repulsion = 22836.401794 eV Total energy + Delta-G solvation = -4987.818704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.12452 -50.73208 -50.14799 -49.61140 -42.36301 -40.48704 -39.22868 -37.10811 -36.10937 -34.35479 -31.70990 -31.22234 -30.78420 -27.37229 -26.68516 -25.02086 -24.22903 -22.66958 -21.50870 -20.74961 -19.89032 -19.61492 -19.32576 -18.35943 -18.16467 -18.04957 -17.71205 -17.50223 -17.12703 -17.04489 -16.96357 -16.52043 -16.45229 -16.09102 -15.92471 -15.87609 -15.63279 -15.20950 -15.06802 -14.65021 -14.43387 -13.91872 -13.76798 -13.39463 -13.26376 -13.05415 -12.91286 -12.83022 -12.64337 -12.27446 -12.12516 -11.76695 -11.15417 -10.82273 -10.61755 -10.21246 -10.00859 -9.66147 -8.19762 -6.36699 -0.92620 -0.76576 0.20208 0.87991 1.46878 1.48322 1.56347 1.58357 1.85028 2.05237 2.32864 2.39487 2.48128 2.76247 2.86376 3.06226 3.11873 3.31505 3.46853 3.84113 4.09421 4.27669 4.52749 4.65284 4.71992 4.90091 5.02860 5.19901 5.29789 5.38817 5.54957 5.65267 5.81090 6.05074 6.22851 6.61948 6.68550 7.03868 7.35693 8.86194 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002494 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.469845 B =11222.065420 C =11900.827246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.073 0.927 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.969 3.031 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.262 1.262 12 N -0.666 5.666 13 C 0.498 3.502 14 O -0.552 6.552 15 C 0.530 3.470 16 O -0.495 6.495 17 N -0.630 5.630 18 C 0.175 3.825 19 C -0.120 4.120 20 C 0.128 3.872 21 F -0.110 7.110 22 C 0.047 3.953 23 F -0.112 7.112 24 C 0.095 3.905 25 F -0.106 7.106 26 C 0.067 3.933 27 F -0.110 7.110 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.413 0.587 33 H 0.440 0.560 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -5.333 -20.469 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.166 3.834 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.091 0.909 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.794 3.206 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.186 1.186 12 N -0.315 5.315 13 C 0.277 3.723 14 O -0.431 6.431 15 C 0.313 3.687 16 O -0.368 6.368 17 N -0.277 5.277 18 C 0.077 3.923 19 C -0.141 4.141 20 C 0.106 3.894 21 F -0.088 7.088 22 C 0.025 3.975 23 F -0.090 7.090 24 C 0.073 3.927 25 F -0.084 7.084 26 C 0.043 3.957 27 F -0.088 7.088 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.249 0.751 33 H 0.281 0.719 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.183 -5.196 -20.281 21.350 hybrid contribution 0.409 0.037 0.455 0.613 sum 4.592 -5.159 -19.826 20.995 Atomic orbital electron populations 1.21938 0.97338 0.99972 1.00417 1.18633 0.91752 0.92447 0.80544 0.96505 1.21507 1.32990 1.13838 0.90673 0.90913 1.25692 0.94742 0.95534 1.02035 1.70014 1.36598 1.23623 1.24815 0.85386 0.77831 0.79185 0.78214 1.20376 1.20914 1.18648 1.46252 1.61523 1.14974 1.08784 1.19871 0.80593 0.87001 0.84823 1.90761 1.51278 1.16179 1.84926 1.20258 0.77651 0.86767 0.84048 1.90738 1.46055 1.15458 1.84563 1.42975 1.65800 1.14114 1.04813 1.17056 0.97409 0.91873 0.86005 1.21218 1.01935 0.92732 0.98233 1.16864 1.00073 0.79265 0.93150 1.91615 1.91402 1.29845 1.95935 1.17128 1.05938 0.88906 0.85556 1.91589 1.90160 1.79770 1.47490 1.16681 1.01080 0.88664 0.86319 1.91611 1.79998 1.80031 1.56789 1.16739 1.04782 0.79783 0.94363 1.91604 1.91880 1.29353 1.95977 0.90974 0.95833 0.93938 0.92357 0.75074 0.71903 0.79845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 9.26 71.98 0.67 -5.69 16 2 C 0.27 12.74 2.56 44.25 0.11 12.86 16 3 H 0.02 0.94 7.58 -2.38 -0.02 0.92 16 4 C -0.55 -27.56 8.73 25.60 0.22 -27.34 16 5 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -49.32 11.32 21.45 0.24 -49.08 16 8 Si 0.97 40.23 29.54 68.60 2.03 42.26 16 9 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 N -0.67 -25.41 5.06 -447.53 -2.27 -27.68 16 13 C 0.50 17.26 7.85 87.23 0.68 17.94 16 14 O -0.55 -21.97 16.15 -3.30 -0.05 -22.02 16 15 C 0.53 14.10 7.69 87.23 0.67 14.78 16 16 O -0.49 -13.53 13.64 -3.38 -0.05 -13.58 16 17 N -0.63 -13.28 5.29 -304.67 -1.61 -14.90 16 18 C 0.17 3.21 6.43 38.20 0.25 3.46 16 19 C -0.12 -2.15 8.69 22.44 0.20 -1.95 16 20 C 0.13 2.20 7.30 22.38 0.16 2.36 16 21 F -0.11 -2.04 17.18 44.97 0.77 -1.27 16 22 C 0.05 0.81 7.31 22.46 0.16 0.97 16 23 F -0.11 -2.10 17.09 44.97 0.77 -1.33 16 24 C 0.09 1.63 7.31 22.42 0.16 1.79 16 25 F -0.11 -1.98 17.09 44.97 0.77 -1.21 16 26 C 0.07 1.16 7.31 22.52 0.16 1.33 16 27 F -0.11 -2.04 16.72 44.97 0.75 -1.29 16 28 H 0.07 3.68 6.07 -2.38 -0.01 3.67 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 32 H 0.41 14.16 8.01 -92.71 -0.74 13.42 16 33 H 0.44 8.52 7.93 -92.71 -0.73 7.78 16 34 H 0.18 3.53 5.78 -2.91 -0.02 3.51 16 Total: -1.00 -56.06 323.83 5.02 -51.04 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.24 Total: 17.04 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 3.90 Total: 22.02 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -3.64 Total: -91.65 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.10 Total: -35.60 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 3.06 Total: -5.10 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -56.06 5.02 -51.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873821905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.135 kcal (2) G-P(sol) polarization free energy of solvation -56.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds