Wall clock time and date at job start Tue Mar 31 2020 18:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47119 * 239.99700 * 3 2 1 5 5 H 1.48508 * 109.46809 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47305 * 119.99495 * 3 2 1 7 7 C 1.38796 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00283 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00101 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47100 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47278 * 180.02562 * 12 11 10 14 14 C 1.34697 * 117.00252 * 180.02562 * 13 12 11 15 15 O 1.21447 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.47880 * 120.00006 * 179.97438 * 14 13 12 17 17 C 1.40467 * 119.71902 * 359.97438 * 16 14 13 18 18 C 1.36069 * 120.77316 * 179.97438 * 17 16 14 19 19 C 1.40093 * 119.86676 * 0.02837 * 18 17 16 20 20 C 1.41593 * 121.88187 * 179.97438 * 19 18 17 21 21 O 1.35279 * 120.86853 * 359.97438 * 20 19 18 22 22 N 1.32308 * 118.25274 * 180.27885 * 20 19 18 23 23 C 1.32435 * 121.53715 * 359.47786 * 22 20 19 24 24 N 1.31123 * 122.92371 * 0.53681 * 23 22 20 25 25 C 1.34122 * 120.44674 * 359.74545 * 24 23 22 26 26 C 1.38593 * 119.72184 * 180.02562 * 16 14 13 27 27 H 0.97001 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47144 * 59.99535 * 10 9 7 29 29 H 1.08998 * 109.47024 * 300.00148 * 10 9 7 30 30 H 1.09001 * 109.46531 * 60.00001 * 11 10 9 31 31 H 1.08998 * 109.47365 * 300.00136 * 11 10 9 32 32 H 1.09003 * 109.47102 * 59.99879 * 12 11 10 33 33 H 1.08998 * 109.47262 * 300.00371 * 12 11 10 34 34 H 1.07999 * 119.61454 * 0.02650 * 17 16 14 35 35 H 1.07999 * 120.06214 * 180.02562 * 18 17 16 36 36 H 0.96700 * 114.00116 * 90.00555 * 21 20 19 37 37 H 1.08003 * 118.54077 * 180.25685 * 23 22 20 38 38 H 1.07996 * 120.32010 * 359.95777 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1513 -6.3077 0.0005 13 8 2.6422 -7.6675 0.0005 14 6 3.5517 -8.6610 0.0005 15 8 4.7375 -8.3987 0.0001 16 6 3.1063 -10.0712 0.0011 17 6 1.7333 -10.3678 0.0022 18 6 1.2997 -11.6575 0.0022 19 6 2.2289 -12.7059 0.0017 20 6 1.8251 -14.0631 0.0023 21 8 0.5143 -14.3972 0.0038 22 7 2.7636 -14.9957 0.0075 23 6 4.0506 -14.6834 0.0018 24 7 4.4836 -13.4457 0.0011 25 6 3.6167 -12.4224 0.0011 26 6 4.0470 -11.0889 0.0016 27 1 -0.4850 0.8401 0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1244 -3.7313 -0.8894 30 1 1.3704 -5.4845 -0.8886 31 1 1.3709 -5.4841 0.8914 32 1 3.7606 -6.1474 0.8901 33 1 3.7593 -6.1478 -0.8898 34 1 1.0134 -9.5627 0.0022 35 1 0.2413 -11.8725 0.0026 36 1 0.1321 -14.4945 -0.8791 37 1 4.7758 -15.4837 0.0021 38 1 5.1017 -10.8565 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885074145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:16 Heat of formation + Delta-G solvation = -65.802163 kcal Electronic energy + Delta-G solvation = -23756.811434 eV Core-core repulsion = 19884.016897 eV Total energy + Delta-G solvation = -3872.794537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.08227 -40.65518 -38.57316 -38.01544 -36.81711 -33.89424 -33.59369 -32.47777 -32.18603 -30.79926 -27.28163 -25.87009 -25.31356 -25.11652 -23.11524 -21.92091 -21.42001 -20.06368 -19.09318 -18.53707 -17.67672 -17.41174 -16.88695 -16.79864 -16.74807 -15.84258 -15.03568 -14.85065 -14.80989 -14.67460 -14.59957 -14.48473 -13.80600 -13.41816 -13.14403 -13.10209 -12.81921 -12.59651 -12.34096 -12.17141 -11.44904 -11.42907 -11.21723 -11.21108 -11.03723 -11.01752 -10.85294 -10.69143 -10.39270 -9.97696 -9.92886 -9.68743 -9.09898 -8.99959 -8.40563 -6.60332 -6.27739 -3.99252 -0.63980 -0.15488 1.02781 1.77084 2.22955 2.53756 2.69717 3.18453 3.20942 3.25460 3.36881 3.44517 3.53348 3.63713 3.93298 4.16372 4.19026 4.20557 4.45760 4.60759 4.76237 5.02591 5.03263 5.08528 5.08939 5.18262 5.33114 5.40055 5.50502 5.55237 5.62500 5.70500 5.79475 5.88185 6.05518 6.26650 6.31933 6.38274 6.59877 6.65406 7.43459 7.44289 7.55893 8.31556 9.18648 10.80316 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.001646 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.476677 B =17009.928849 C =17766.114273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.123 6.123 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.073 3.927 13 O -0.347 6.347 14 C 0.505 3.495 15 O -0.495 6.495 16 C -0.072 4.072 17 C -0.076 4.076 18 C -0.077 4.077 19 C -0.156 4.156 20 C 0.408 3.592 21 O -0.468 6.468 22 N -0.541 5.541 23 C 0.322 3.678 24 N -0.501 5.501 25 C 0.159 3.841 26 C -0.031 4.031 27 H 0.269 0.731 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.415 0.585 37 H 0.205 0.795 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 -29.578 -1.775 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.263 6.263 14 C 0.348 3.652 15 O -0.384 6.384 16 C -0.077 4.077 17 C -0.094 4.094 18 C -0.097 4.097 19 C -0.162 4.162 20 C 0.207 3.793 21 O -0.276 6.276 22 N -0.266 5.266 23 C 0.033 3.967 24 N -0.216 5.216 25 C 0.032 3.968 26 C -0.050 4.050 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.276 0.724 37 H 0.222 0.778 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.835 -30.129 -1.181 30.285 hybrid contribution 1.273 1.896 -0.420 2.322 sum 4.107 -28.233 -1.602 28.575 Atomic orbital electron populations 1.70002 1.05926 1.27560 1.46973 1.25012 0.95098 0.99120 0.94466 0.86206 0.79235 0.81095 0.78899 1.19902 1.20774 1.19894 1.22655 0.94572 0.90673 1.58913 0.90865 1.84640 1.08679 0.99220 1.96901 1.23185 1.03535 0.96260 1.03419 1.21297 0.96356 0.91547 1.04421 1.23381 0.98011 0.75818 1.02958 1.86500 1.39426 1.17053 1.83306 1.20950 0.84367 0.86346 0.73552 1.90869 1.17869 1.84840 1.44814 1.19299 0.94407 0.90256 1.03692 1.21299 0.94584 0.97776 0.95752 1.20863 0.99997 0.91047 0.97796 1.19799 0.95665 0.95132 1.05598 1.19653 0.85229 0.86549 0.87900 1.84633 1.17190 1.91161 1.34615 1.67917 1.02839 1.39316 1.16570 1.24802 0.89160 0.92826 0.89896 1.68763 1.38098 1.00059 1.14705 1.18659 0.87977 0.93619 0.96504 1.21191 1.01295 0.88512 0.93978 0.92166 0.91675 0.91674 0.90241 0.90223 0.90802 0.90809 0.82799 0.83281 0.72380 0.77824 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.61 9.50 30.94 0.29 -14.32 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.10 21.44 -107.50 -2.30 -5.40 16 10 C -0.12 -2.21 5.67 37.16 0.21 -2.00 16 11 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 12 C 0.07 0.97 5.47 37.16 0.20 1.17 16 13 O -0.35 -4.29 9.43 -40.48 -0.38 -4.67 16 14 C 0.50 6.14 7.90 34.68 0.27 6.41 16 15 O -0.50 -7.26 16.09 -19.22 -0.31 -7.57 16 16 C -0.07 -0.70 5.87 -104.98 -0.62 -1.31 16 17 C -0.08 -0.57 9.52 -39.52 -0.38 -0.95 16 18 C -0.08 -0.49 9.58 -39.67 -0.38 -0.87 16 19 C -0.16 -1.24 5.76 -106.62 -0.61 -1.86 16 20 C 0.41 3.04 7.89 -16.07 -0.13 2.91 16 21 O -0.47 -2.35 12.91 -17.53 -0.23 -2.57 16 22 N -0.54 -4.49 10.42 -14.23 -0.15 -4.64 16 23 C 0.32 2.42 12.22 -92.17 -1.13 1.29 16 24 N -0.50 -4.70 10.44 -12.65 -0.13 -4.83 16 25 C 0.16 1.50 6.61 -84.86 -0.56 0.94 16 26 C -0.03 -0.30 9.58 -38.75 -0.37 -0.67 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.15 0.98 7.57 -52.49 -0.40 0.59 16 35 H 0.15 0.56 7.70 -52.49 -0.40 0.15 16 36 H 0.41 -0.11 9.06 45.56 0.41 0.30 16 37 H 0.21 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.16 1.55 7.61 -52.49 -0.40 1.15 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -34.85 356.44 -9.15 -43.99 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.29 Total: -2.16 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.44 Total: -8.94 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.45 Total: -34.24 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.92 Total: -14.81 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.30 Total: -5.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.85 -9.15 -43.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885074145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.809 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds