Wall clock time and date at job start Tue Mar 31 2020 18:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48499 * 109.47119 * 239.99700 * 3 2 1 5 5 H 1.48508 * 109.46809 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47305 * 119.99495 * 3 2 1 7 7 C 1.38796 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00283 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00101 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47100 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47278 * 180.02562 * 12 11 10 14 14 C 1.34697 * 117.00252 * 180.02562 * 13 12 11 15 15 O 1.21447 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.47880 * 120.00006 * 179.97438 * 14 13 12 17 17 C 1.40467 * 119.71902 * 359.97438 * 16 14 13 18 18 C 1.36069 * 120.77316 * 179.97438 * 17 16 14 19 19 C 1.40093 * 119.86676 * 0.02837 * 18 17 16 20 20 C 1.41593 * 121.88187 * 179.97438 * 19 18 17 21 21 O 1.35279 * 120.86853 * 359.97438 * 20 19 18 22 22 N 1.32308 * 118.25274 * 180.27885 * 20 19 18 23 23 C 1.32435 * 121.53715 * 359.47786 * 22 20 19 24 24 N 1.31123 * 122.92371 * 0.53681 * 23 22 20 25 25 C 1.34122 * 120.44674 * 359.74545 * 24 23 22 26 26 C 1.38593 * 119.72184 * 180.02562 * 16 14 13 27 27 H 0.97001 * 119.99803 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47144 * 59.99535 * 10 9 7 29 29 H 1.08998 * 109.47024 * 300.00148 * 10 9 7 30 30 H 1.09001 * 109.46531 * 60.00001 * 11 10 9 31 31 H 1.08998 * 109.47365 * 300.00136 * 11 10 9 32 32 H 1.09003 * 109.47102 * 59.99879 * 12 11 10 33 33 H 1.08998 * 109.47262 * 300.00371 * 12 11 10 34 34 H 1.07999 * 119.61454 * 0.02650 * 17 16 14 35 35 H 1.07999 * 120.06214 * 180.02562 * 18 17 16 36 36 H 0.96700 * 114.00116 * 90.00555 * 21 20 19 37 37 H 1.08003 * 118.54077 * 180.25685 * 23 22 20 38 38 H 1.07996 * 120.32010 * 359.95777 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9793 -5.3243 0.0012 12 6 3.1513 -6.3077 0.0005 13 8 2.6422 -7.6675 0.0005 14 6 3.5517 -8.6610 0.0005 15 8 4.7375 -8.3987 0.0001 16 6 3.1063 -10.0712 0.0011 17 6 1.7333 -10.3678 0.0022 18 6 1.2997 -11.6575 0.0022 19 6 2.2289 -12.7059 0.0017 20 6 1.8251 -14.0631 0.0023 21 8 0.5143 -14.3972 0.0038 22 7 2.7636 -14.9957 0.0075 23 6 4.0506 -14.6834 0.0018 24 7 4.4836 -13.4457 0.0011 25 6 3.6167 -12.4224 0.0011 26 6 4.0470 -11.0889 0.0016 27 1 -0.4850 0.8401 0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1244 -3.7313 -0.8894 30 1 1.3704 -5.4845 -0.8886 31 1 1.3709 -5.4841 0.8914 32 1 3.7606 -6.1474 0.8901 33 1 3.7593 -6.1478 -0.8898 34 1 1.0134 -9.5627 0.0022 35 1 0.2413 -11.8725 0.0026 36 1 0.1321 -14.4945 -0.8791 37 1 4.7758 -15.4837 0.0021 38 1 5.1017 -10.8565 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885074145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:15 Heat of formation + Delta-G solvation = -89.439679 kcal Electronic energy + Delta-G solvation = -23757.836434 eV Core-core repulsion = 19884.016897 eV Total energy + Delta-G solvation = -3873.819537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.67795 -41.60856 -39.11732 -38.60250 -37.83836 -34.94912 -34.58416 -34.40438 -32.87228 -31.39266 -28.46675 -27.66734 -26.44246 -25.71029 -23.79484 -22.82788 -22.58782 -20.68531 -19.79791 -19.50197 -19.09031 -18.47682 -17.83017 -17.65692 -17.40308 -16.89205 -16.46663 -16.18122 -16.03870 -15.54622 -15.22716 -15.19344 -15.00229 -14.48748 -14.24285 -14.10463 -13.82188 -13.62515 -13.34873 -13.15567 -12.93600 -12.92256 -12.64501 -12.42143 -12.41095 -12.01942 -11.95263 -11.73613 -11.55005 -11.49095 -11.13690 -10.63245 -10.52312 -10.35735 -9.58842 -8.66930 -8.37733 -6.13860 -1.27079 -0.74850 0.39478 1.03891 1.18070 1.35984 1.41222 1.48839 1.78328 1.89392 2.15023 2.27442 2.76146 2.93814 2.96889 3.04374 3.24736 3.34273 3.42180 3.70612 3.80875 3.85642 3.95302 4.05870 4.14649 4.18334 4.33085 4.40676 4.57895 4.60139 4.69389 4.92592 4.98077 5.02968 5.06564 5.10621 5.29644 5.32672 5.40242 5.74398 6.17836 6.43238 6.45775 6.88310 7.04955 8.71179 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.001646 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.476677 B =17009.928849 C =17766.114273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.182 6.182 10 C -0.094 4.094 11 C -0.085 4.085 12 C 0.080 3.920 13 O -0.342 6.342 14 C 0.508 3.492 15 O -0.526 6.526 16 C -0.077 4.077 17 C -0.081 4.081 18 C -0.057 4.057 19 C -0.164 4.164 20 C 0.419 3.581 21 O -0.468 6.468 22 N -0.558 5.558 23 C 0.325 3.675 24 N -0.529 5.529 25 C 0.144 3.856 26 C -0.042 4.042 27 H 0.272 0.728 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.438 0.562 37 H 0.234 0.766 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -30.739 -1.885 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.047 5.953 10 C -0.243 4.243 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.258 6.258 14 C 0.353 3.647 15 O -0.416 6.416 16 C -0.081 4.081 17 C -0.099 4.099 18 C -0.077 4.077 19 C -0.170 4.170 20 C 0.217 3.783 21 O -0.280 6.280 22 N -0.284 5.284 23 C 0.037 3.963 24 N -0.244 5.244 25 C 0.018 3.982 26 C -0.061 4.061 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.185 0.815 35 H 0.200 0.800 36 H 0.304 0.696 37 H 0.250 0.750 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.474 -31.306 -1.311 31.431 hybrid contribution 1.328 2.059 -0.394 2.482 sum 3.802 -29.247 -1.705 29.542 Atomic orbital electron populations 1.70130 1.07589 1.28660 1.47786 1.26027 0.96025 1.03006 0.93733 0.85095 0.77965 0.76244 0.79301 1.19011 1.19964 1.19032 1.23036 0.94869 0.92068 1.59094 0.90809 1.84587 1.12969 1.00672 1.97064 1.23082 1.00852 0.96643 1.03691 1.21107 0.96921 0.89538 1.04801 1.23141 0.96898 0.76135 1.03349 1.86481 1.39331 1.16641 1.83339 1.21371 0.83880 0.87034 0.72426 1.90855 1.19059 1.85277 1.46400 1.19211 0.95563 0.88502 1.04846 1.21433 0.93578 0.98815 0.96042 1.21184 1.01236 0.89934 0.95297 1.19955 0.95259 0.96009 1.05799 1.19748 0.85994 0.86215 0.86308 1.84596 1.15791 1.90912 1.36678 1.68034 1.03244 1.39574 1.17540 1.25420 0.89658 0.92973 0.88280 1.68783 1.38639 1.00702 1.16297 1.18762 0.88977 0.93455 0.96987 1.21114 1.00914 0.89032 0.95029 0.91906 0.91377 0.91322 0.89860 0.89926 0.90542 0.90463 0.81451 0.80033 0.69576 0.74967 0.83268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.65 13.22 21.65 0.29 -53.36 16 2 C 0.02 0.97 5.49 84.86 0.47 1.44 16 3 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -30.72 9.50 67.95 0.65 -30.07 16 8 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 9 S -0.18 -9.30 21.44 -56.49 -1.21 -10.51 16 10 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 11 C -0.09 -2.49 5.60 30.59 0.17 -2.32 16 12 C 0.08 2.03 5.47 71.98 0.39 2.43 16 13 O -0.34 -8.07 9.43 -56.06 -0.53 -8.60 16 14 C 0.51 12.19 7.90 70.38 0.56 12.75 16 15 O -0.53 -15.57 16.09 20.01 0.32 -15.25 16 16 C -0.08 -1.45 5.87 -20.10 -0.12 -1.57 16 17 C -0.08 -1.06 9.52 22.31 0.21 -0.85 16 18 C -0.06 -0.57 9.58 22.22 0.21 -0.36 16 19 C -0.16 -2.33 5.76 -21.16 -0.12 -2.45 16 20 C 0.42 5.33 7.89 85.45 0.67 6.00 16 21 O -0.47 -3.25 12.91 -85.64 -1.11 -4.35 16 22 N -0.56 -8.31 10.42 -311.98 -3.25 -11.56 16 23 C 0.32 4.52 12.22 180.89 2.21 6.73 16 24 N -0.53 -9.76 10.44 -193.93 -2.03 -11.78 16 25 C 0.14 2.66 6.61 40.09 0.26 2.93 16 26 C -0.04 -0.83 9.58 22.81 0.22 -0.61 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.17 1.73 7.57 -2.91 -0.02 1.71 16 35 H 0.18 0.61 7.70 -2.91 -0.02 0.58 16 36 H 0.44 -1.73 9.06 -74.06 -0.67 -2.40 16 37 H 0.23 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.15 3.13 7.61 -2.91 -0.02 3.11 16 Total: -1.00 -75.81 356.44 1.16 -74.65 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.45 Total: 4.54 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 6.20 Total: -9.08 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -4.99 Total: -76.70 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.31 Total: -28.19 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.21 Total: -10.51 kcal Total: -75.81 1.16 -74.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885074145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.794 kcal (2) G-P(sol) polarization free energy of solvation -75.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds