Wall clock time and date at job start Tue Mar 31 2020 17:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00078 * 2 1 4 4 C 1.52998 * 109.47516 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47356 * 64.99293 * 4 3 2 6 6 C 1.36934 * 120.00086 * 85.00031 * 5 4 3 7 7 H 1.07996 * 119.99869 * 324.94386 * 6 5 4 8 8 C 1.38810 * 120.00194 * 145.21083 * 6 5 4 9 9 N 1.31621 * 119.99887 * 327.63068 * 8 6 5 10 10 Si 1.86802 * 120.00343 * 147.62627 * 8 6 5 11 11 H 1.48500 * 109.46732 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47003 * 120.00000 * 10 8 6 13 13 H 1.48497 * 109.47480 * 240.00371 * 10 8 6 14 14 S 1.65607 * 120.00270 * 265.00618 * 5 4 3 15 15 O 1.42098 * 106.40081 * 60.97525 * 14 5 4 16 16 O 1.42100 * 106.40075 * 193.89800 * 14 5 4 17 17 C 1.76200 * 107.21459 * 307.43867 * 14 5 4 18 18 C 1.38608 * 120.42560 * 152.79767 * 17 14 5 19 19 C 1.38661 * 118.43697 * 179.97438 * 18 17 14 20 20 C 1.50705 * 120.40279 * 180.02562 * 19 18 17 21 21 C 1.38191 * 119.19436 * 0.02562 * 19 18 17 22 22 N 1.31876 * 120.77775 * 359.97438 * 21 19 18 23 23 C 1.31970 * 121.70693 * 359.70306 * 22 21 19 24 24 Cl 1.73599 * 119.63385 * 180.28793 * 23 22 21 25 25 H 1.08999 * 109.47158 * 60.00705 * 1 2 3 26 26 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47305 * 300.00239 * 1 2 3 28 28 H 1.08999 * 109.47451 * 59.99572 * 3 2 1 29 29 H 1.09007 * 109.46433 * 299.99807 * 3 2 1 30 30 H 1.09006 * 109.46810 * 304.99988 * 4 3 2 31 31 H 1.08999 * 109.47548 * 184.99808 * 4 3 2 32 32 H 0.97009 * 120.00055 * 179.97438 * 9 8 6 33 33 H 1.08002 * 120.77824 * 359.97438 * 18 17 14 34 34 H 1.09006 * 109.47148 * 90.00284 * 20 19 18 35 35 H 1.09001 * 109.47339 * 209.99875 * 20 19 18 36 36 H 1.08994 * 109.47294 * 330.00750 * 20 19 18 37 37 H 1.08000 * 119.60831 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1675 1.3350 -2.3682 7 1 3.5269 2.1843 -2.5544 8 6 5.1815 1.0212 -3.2626 9 7 6.2981 0.4770 -2.8271 10 14 4.9617 1.3712 -5.0843 11 1 3.6274 1.9814 -5.3136 12 1 6.0193 2.3092 -5.5393 13 1 5.0638 0.1018 -5.8482 14 16 4.2414 -1.0689 -1.3189 15 8 3.0007 -1.6900 -1.0120 16 8 4.9547 -1.3108 -2.5239 17 6 5.3393 -1.4725 -0.0011 18 6 5.3228 -2.7383 0.5634 19 6 6.2049 -3.0114 1.5978 20 6 6.2252 -4.3731 2.2434 21 6 7.0652 -2.0199 2.0296 22 7 7.0541 -0.8260 1.4697 23 6 6.2331 -0.5320 0.4791 24 17 6.2693 1.0550 -0.2235 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1765 0.0889 32 1 7.0066 0.2574 -3.4522 33 1 4.6390 -3.4940 0.2060 34 1 6.9327 -5.0141 1.7174 35 1 6.5282 -4.2764 3.2860 36 1 5.2295 -4.8136 2.1937 37 1 7.7553 -2.2255 2.8345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886407275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:46 Heat of formation + Delta-G solvation = -34.994332 kcal Electronic energy + Delta-G solvation = -26515.558348 eV Core-core repulsion = 22641.666889 eV Total energy + Delta-G solvation = -3873.891459 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.88136 -37.36664 -35.99675 -35.51677 -34.92775 -34.16455 -33.28886 -31.89877 -31.55904 -28.51271 -27.04227 -25.71510 -24.49203 -23.57079 -22.21705 -21.42078 -18.80966 -17.43690 -16.93090 -16.52491 -16.04297 -15.64201 -15.53535 -14.79064 -14.64399 -14.52126 -14.07816 -13.88039 -13.66999 -13.20268 -13.06217 -12.86146 -12.70569 -12.25728 -12.23117 -11.95697 -11.76320 -11.31252 -11.06824 -10.93460 -10.54462 -10.48028 -10.37085 -10.27401 -10.24202 -10.09296 -9.79179 -9.72157 -9.67869 -9.14019 -8.94898 -8.49956 -8.38246 -7.46688 -6.15582 -3.70012 0.98873 1.37258 1.86271 2.60128 3.37558 3.48739 3.51628 3.77638 4.27172 4.52448 4.54899 4.75976 4.82196 5.01078 5.03122 5.18112 5.22966 5.42932 5.54836 5.66730 5.75200 5.78384 5.83757 5.88021 5.89246 5.95004 6.00846 6.14221 6.22524 6.37729 6.52036 6.58687 6.68824 7.35847 7.76300 7.89603 7.93949 8.52574 9.21341 9.60562 10.84943 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.007545 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.545829 B = 3710.353718 C = 4752.911932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.034 3.966 4 C 0.139 3.861 5 N -0.843 5.843 6 C -0.332 4.332 7 H 0.084 0.916 8 C 0.062 3.938 9 N -0.788 5.788 10 Si 0.904 3.096 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.279 1.279 14 S 2.653 3.347 15 O -0.987 6.987 16 O -0.931 6.931 17 C -0.683 4.683 18 C 0.019 3.981 19 C -0.174 4.174 20 C -0.104 4.104 21 C 0.145 3.855 22 N -0.499 5.499 23 C 0.247 3.753 24 Cl 0.067 6.933 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.270 0.730 33 H 0.143 0.857 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -2.825 9.480 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C -0.045 4.045 4 C 0.011 3.989 5 N -0.675 5.675 6 C -0.466 4.466 7 H 0.101 0.899 8 C -0.152 4.152 9 N -0.424 5.424 10 Si 0.731 3.269 11 H -0.196 1.196 12 H -0.214 1.214 13 H -0.205 1.205 14 S 2.743 3.257 15 O -0.976 6.976 16 O -0.920 6.920 17 C -0.765 4.765 18 C -0.008 4.008 19 C -0.177 4.177 20 C -0.161 4.161 21 C -0.013 4.013 22 N -0.211 5.211 23 C 0.083 3.917 24 Cl 0.097 6.903 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.234 -2.984 9.185 9.736 hybrid contribution -0.254 -0.157 -0.555 0.630 sum -1.488 -3.141 8.630 9.304 Atomic orbital electron populations 1.22601 0.83155 1.01855 0.98557 1.88245 1.17722 1.26356 1.94988 1.23217 0.96397 0.85620 0.99241 1.21172 0.90953 0.99805 0.87008 1.52353 1.81312 1.20352 1.13524 1.18577 1.13887 1.14246 0.99884 0.89861 1.25105 0.93078 0.96806 1.00223 1.70091 1.02476 1.34351 1.35507 0.86279 0.78089 0.77778 0.84784 1.19638 1.21355 1.20455 1.05491 0.73225 0.74309 0.72668 1.93487 1.42222 1.77102 1.84742 1.93608 1.72460 1.84724 1.41159 1.32333 1.19002 1.01084 1.24099 1.21068 0.94216 0.94110 0.91370 1.20891 0.99191 0.98346 0.99303 1.20666 1.02998 0.92329 1.00138 1.22693 0.94875 0.87237 0.96458 1.67330 1.22626 1.21202 1.09911 1.21802 0.89174 0.91231 0.89491 1.98598 1.96329 1.18306 1.77055 0.94830 0.90371 0.95501 0.94433 0.92689 0.93561 0.89526 0.91971 0.83907 0.90978 0.91210 0.91168 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.01 101.05 1.11 1.68 16 2 O -0.36 -7.27 8.17 -56.85 -0.46 -7.74 16 3 C 0.03 0.63 6.26 37.16 0.23 0.86 16 4 C 0.14 2.78 3.91 -4.04 -0.02 2.76 16 5 N -0.84 -19.95 1.22 -59.91 -0.07 -20.02 16 6 C -0.33 -8.29 8.50 -15.06 -0.13 -8.41 16 7 H 0.08 2.01 8.00 -52.49 -0.42 1.59 16 8 C 0.06 1.59 3.68 -17.43 -0.06 1.53 16 9 N -0.79 -20.87 8.05 55.49 0.45 -20.42 16 10 Si 0.90 21.08 29.66 -169.99 -5.04 16.04 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 S 2.65 65.74 4.72 -107.50 -0.51 65.24 16 15 O -0.99 -25.15 15.32 -66.10 -1.01 -26.16 16 16 O -0.93 -25.87 13.23 -57.17 -0.76 -26.63 16 17 C -0.68 -14.98 5.25 -39.40 -0.21 -15.18 16 18 C 0.02 0.35 9.40 -39.29 -0.37 -0.02 16 19 C -0.17 -2.66 5.90 -104.48 -0.62 -3.28 16 20 C -0.10 -1.09 10.04 36.01 0.36 -0.72 16 21 C 0.15 2.27 10.86 -17.55 -0.19 2.08 16 22 N -0.50 -9.67 10.34 -10.36 -0.11 -9.78 16 23 C 0.25 5.33 6.55 -17.45 -0.11 5.21 16 24 Cl 0.07 1.48 19.41 -51.86 -1.01 0.47 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.91 6.58 -51.93 -0.34 0.56 16 31 H 0.09 1.59 7.47 -51.93 -0.39 1.21 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.14 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -32.15 324.31 -8.14 -40.29 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.51 Total: -2.69 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 0.00 Total: -13.49 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 0.27 Total: -50.23 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -2.23 Total: -60.53 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.04 Total: 16.04 kcal Atomic # 16 Polarization: 65.74 SS G_CDS: -0.51 Total: 65.24 kcal Atomic # 17 Polarization: 1.48 SS G_CDS: -1.01 Total: 0.47 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.15 -8.14 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886407275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.293 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds