Wall clock time and date at job start Tue Mar 31 2020 17:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00078 * 2 1 4 4 C 1.52998 * 109.47516 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47356 * 64.99293 * 4 3 2 6 6 C 1.36934 * 120.00086 * 85.00031 * 5 4 3 7 7 H 1.07996 * 119.99869 * 324.94386 * 6 5 4 8 8 C 1.38810 * 120.00194 * 145.21083 * 6 5 4 9 9 N 1.31621 * 119.99887 * 327.63068 * 8 6 5 10 10 Si 1.86802 * 120.00343 * 147.62627 * 8 6 5 11 11 H 1.48500 * 109.46732 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47003 * 120.00000 * 10 8 6 13 13 H 1.48497 * 109.47480 * 240.00371 * 10 8 6 14 14 S 1.65607 * 120.00270 * 265.00618 * 5 4 3 15 15 O 1.42098 * 106.40081 * 60.97525 * 14 5 4 16 16 O 1.42100 * 106.40075 * 193.89800 * 14 5 4 17 17 C 1.76200 * 107.21459 * 307.43867 * 14 5 4 18 18 C 1.38608 * 120.42560 * 152.79767 * 17 14 5 19 19 C 1.38661 * 118.43697 * 179.97438 * 18 17 14 20 20 C 1.50705 * 120.40279 * 180.02562 * 19 18 17 21 21 C 1.38191 * 119.19436 * 0.02562 * 19 18 17 22 22 N 1.31876 * 120.77775 * 359.97438 * 21 19 18 23 23 C 1.31970 * 121.70693 * 359.70306 * 22 21 19 24 24 Cl 1.73599 * 119.63385 * 180.28793 * 23 22 21 25 25 H 1.08999 * 109.47158 * 60.00705 * 1 2 3 26 26 H 1.09006 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47305 * 300.00239 * 1 2 3 28 28 H 1.08999 * 109.47451 * 59.99572 * 3 2 1 29 29 H 1.09007 * 109.46433 * 299.99807 * 3 2 1 30 30 H 1.09006 * 109.46810 * 304.99988 * 4 3 2 31 31 H 1.08999 * 109.47548 * 184.99808 * 4 3 2 32 32 H 0.97009 * 120.00055 * 179.97438 * 9 8 6 33 33 H 1.08002 * 120.77824 * 359.97438 * 18 17 14 34 34 H 1.09006 * 109.47148 * 90.00284 * 20 19 18 35 35 H 1.09001 * 109.47339 * 209.99875 * 20 19 18 36 36 H 1.08994 * 109.47294 * 330.00750 * 20 19 18 37 37 H 1.08000 * 119.60831 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.1675 1.3350 -2.3682 7 1 3.5269 2.1843 -2.5544 8 6 5.1815 1.0212 -3.2626 9 7 6.2981 0.4770 -2.8271 10 14 4.9617 1.3712 -5.0843 11 1 3.6274 1.9814 -5.3136 12 1 6.0193 2.3092 -5.5393 13 1 5.0638 0.1018 -5.8482 14 16 4.2414 -1.0689 -1.3189 15 8 3.0007 -1.6900 -1.0120 16 8 4.9547 -1.3108 -2.5239 17 6 5.3393 -1.4725 -0.0011 18 6 5.3228 -2.7383 0.5634 19 6 6.2049 -3.0114 1.5978 20 6 6.2252 -4.3731 2.2434 21 6 7.0652 -2.0199 2.0296 22 7 7.0541 -0.8260 1.4697 23 6 6.2331 -0.5320 0.4791 24 17 6.2693 1.0550 -0.2235 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6885 1.8463 -0.8901 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1765 0.0889 32 1 7.0066 0.2574 -3.4522 33 1 4.6390 -3.4940 0.2060 34 1 6.9327 -5.0141 1.7174 35 1 6.5282 -4.2764 3.2860 36 1 5.2295 -4.8136 2.1937 37 1 7.7553 -2.2255 2.8345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886407275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:44 Heat of formation + Delta-G solvation = -57.121677 kcal Electronic energy + Delta-G solvation = -26516.517861 eV Core-core repulsion = 22641.666889 eV Total energy + Delta-G solvation = -3874.850973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.27880 -38.85662 -37.72784 -37.30467 -36.66045 -36.12154 -34.56889 -33.60916 -33.12645 -30.11550 -28.16661 -27.10455 -26.18115 -25.08540 -23.58458 -23.00486 -20.65618 -19.11643 -18.46230 -18.06753 -17.60005 -17.30494 -17.04997 -16.55823 -16.20492 -16.05817 -15.70832 -15.50947 -14.94192 -14.86650 -14.49399 -13.98335 -13.92182 -13.76723 -13.69093 -13.53526 -13.04305 -12.99291 -12.76753 -12.59726 -12.43166 -12.23044 -12.13796 -11.98548 -11.90997 -11.69548 -11.54663 -11.38569 -11.24614 -10.67172 -10.39782 -10.25532 -9.80249 -9.33984 -8.07790 -5.64107 -0.45902 -0.04004 0.04164 1.04965 1.49653 1.59198 1.64334 2.35573 2.47316 2.72647 3.10537 3.22261 3.26824 3.52953 3.60988 3.77501 4.00644 4.06401 4.26999 4.35092 4.43297 4.48358 4.63385 4.64937 4.67782 4.73714 4.82249 4.85125 4.94683 5.06282 5.07176 5.10165 5.47499 5.65274 5.79757 6.53422 6.54604 6.56833 7.32483 7.68904 8.89649 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.011715 B = 0.007545 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.545829 B = 3710.353718 C = 4752.911932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.036 3.964 4 C 0.134 3.866 5 N -0.848 5.848 6 C -0.337 4.337 7 H 0.088 0.912 8 C 0.025 3.975 9 N -0.804 5.804 10 Si 0.941 3.059 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.300 1.300 14 S 2.655 3.345 15 O -1.006 7.006 16 O -0.973 6.973 17 C -0.705 4.705 18 C -0.003 4.003 19 C -0.154 4.154 20 C -0.103 4.103 21 C 0.149 3.851 22 N -0.512 5.512 23 C 0.229 3.771 24 Cl 0.048 6.952 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.261 0.739 33 H 0.153 0.847 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 -3.633 11.882 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.043 4.043 4 C 0.006 3.994 5 N -0.681 5.681 6 C -0.471 4.471 7 H 0.106 0.894 8 C -0.186 4.186 9 N -0.440 5.440 10 Si 0.768 3.232 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.227 1.227 14 S 2.750 3.250 15 O -0.994 6.994 16 O -0.962 6.962 17 C -0.792 4.792 18 C -0.030 4.030 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.009 4.009 22 N -0.224 5.224 23 C 0.065 3.935 24 Cl 0.078 6.922 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.210 -3.750 11.558 12.211 hybrid contribution -0.256 -0.045 -1.087 1.117 sum -1.466 -3.795 10.471 11.234 Atomic orbital electron populations 1.22799 0.81090 1.02690 1.00216 1.88183 1.20192 1.27518 1.95321 1.23206 0.94943 0.85361 1.00742 1.21363 0.92427 1.00063 0.85506 1.52282 1.81437 1.19868 1.14477 1.18724 1.13513 1.14443 1.00416 0.89395 1.25674 0.93199 0.97252 1.02513 1.70180 1.02718 1.35628 1.35521 0.85686 0.78878 0.76817 0.81866 1.18397 1.20162 1.22678 1.04734 0.73070 0.74469 0.72712 1.93457 1.43228 1.77554 1.85196 1.93555 1.73255 1.85389 1.43977 1.31831 1.19686 1.03073 1.24580 1.21437 0.95734 0.93147 0.92642 1.21443 0.96602 1.00488 0.97109 1.20846 1.04269 0.89235 1.01679 1.23647 0.94922 0.85790 0.96496 1.67370 1.22253 1.23210 1.09572 1.21723 0.90279 0.90732 0.90737 1.98576 1.96515 1.19433 1.77721 0.94376 0.90077 0.92534 0.90732 0.93190 0.93487 0.88392 0.92860 0.82968 0.89210 0.87966 0.90325 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.11 16 2 O -0.39 -15.87 8.17 -128.31 -1.05 -16.91 16 3 C 0.04 1.29 6.26 71.98 0.45 1.74 16 4 C 0.13 5.35 3.91 86.38 0.34 5.68 16 5 N -0.85 -40.78 1.22 -343.47 -0.42 -41.20 16 6 C -0.34 -17.13 8.50 84.03 0.71 -16.41 16 7 H 0.09 4.29 8.00 -2.91 -0.02 4.26 16 8 C 0.03 1.33 3.68 84.86 0.31 1.64 16 9 N -0.80 -43.89 8.05 21.65 0.17 -43.72 16 10 Si 0.94 43.88 29.66 68.60 2.03 45.91 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 14 S 2.66 134.95 4.72 -56.49 -0.27 134.68 16 15 O -1.01 -52.41 15.32 -119.47 -1.83 -54.24 16 16 O -0.97 -56.14 13.23 -128.00 -1.69 -57.83 16 17 C -0.70 -31.08 5.25 22.39 0.12 -30.96 16 18 C 0.00 -0.11 9.40 22.46 0.21 0.10 16 19 C -0.15 -4.18 5.90 -19.77 -0.12 -4.30 16 20 C -0.10 -1.65 10.04 71.24 0.72 -0.93 16 21 C 0.15 4.12 10.86 84.68 0.92 5.04 16 22 N -0.51 -19.02 10.34 -186.70 -1.93 -20.95 16 23 C 0.23 9.86 6.55 84.70 0.56 10.42 16 24 Cl 0.05 2.15 19.41 -2.72 -0.05 2.10 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 26 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 1.85 6.58 -2.38 -0.02 1.84 16 31 H 0.10 3.61 7.47 -2.39 -0.02 3.59 16 32 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 33 H 0.15 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.10 1.04 8.09 -2.39 -0.02 1.03 16 36 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 37 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -72.40 324.31 1.52 -70.87 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.09 Total: 7.17 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 5.46 Total: -25.87 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -2.18 Total: -105.87 kcal Atomic # 8 Polarization: -124.42 SS G_CDS: -4.57 Total: -128.99 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 134.95 SS G_CDS: -0.27 Total: 134.68 kcal Atomic # 17 Polarization: 2.15 SS G_CDS: -0.05 Total: 2.10 kcal Total: -72.40 1.52 -70.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886407275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.753 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds