Wall clock time and date at job start Tue Mar 31 2020 19:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00067 * 2 1 4 4 H 1.48504 * 109.47094 * 270.00106 * 3 2 1 5 5 H 1.48500 * 109.46824 * 29.99596 * 3 2 1 6 6 H 1.48501 * 109.47095 * 149.99940 * 3 2 1 7 7 C 1.37881 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99626 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46652 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99497 * 179.97438 * 10 9 7 12 12 O 1.21558 * 120.00375 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.00039 * 180.02562 * 11 10 9 14 14 C 1.39596 * 120.14303 * 0.20859 * 13 11 10 15 15 C 1.37935 * 119.85560 * 180.25487 * 14 13 11 16 16 C 1.38387 * 120.14051 * 359.51427 * 15 14 13 17 17 C 1.38336 * 120.29582 * 0.27962 * 16 15 14 18 18 C 1.50691 * 119.92818 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.47033 * 90.00152 * 18 17 16 20 20 C 1.32244 * 119.37021 * 269.74848 * 19 18 17 21 21 O 1.21234 * 123.10025 * 0.02562 * 20 19 18 22 22 C 1.51302 * 113.79815 * 179.83898 * 20 19 18 23 23 S 1.82471 * 103.00630 * 0.37036 * 22 20 19 24 24 C 1.33468 * 119.36957 * 90.02586 * 19 18 17 25 25 O 1.21580 * 126.16119 * 359.97402 * 24 19 18 26 26 C 1.37977 * 120.14092 * 359.95557 * 17 16 15 27 27 H 0.97002 * 120.00314 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46852 * 59.99648 * 9 7 2 29 29 H 1.09000 * 109.47102 * 300.00092 * 9 7 2 30 30 H 0.96996 * 120.00628 * 0.02562 * 10 9 7 31 31 H 1.08004 * 120.07609 * 0.04651 * 14 13 11 32 32 H 1.08002 * 119.93294 * 179.79870 * 15 14 13 33 33 H 1.08006 * 119.84850 * 180.25881 * 16 15 14 34 34 H 1.09001 * 109.47499 * 209.99775 * 18 17 16 35 35 H 1.08997 * 109.47573 * 329.99831 * 18 17 16 36 36 H 1.09000 * 110.88071 * 241.91182 * 22 20 19 37 37 H 1.09001 * 110.69302 * 118.74218 * 22 20 19 38 38 H 1.08004 * 120.07573 * 179.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7538 -4.8833 0.0044 12 8 0.5587 -5.1055 0.0046 13 6 2.7146 -6.0070 0.0059 14 6 4.0876 -5.7554 0.0101 15 6 4.9787 -6.8083 0.0062 16 6 4.5141 -8.1119 0.0084 17 6 3.1547 -8.3682 0.0086 18 6 2.6578 -9.7908 0.0103 19 7 2.4967 -10.2501 1.3922 20 6 3.5118 -10.8379 2.0028 21 8 4.5871 -11.0205 1.4735 22 6 3.2089 -11.2575 3.4246 23 16 1.4746 -10.7354 3.6462 24 6 1.3264 -10.0723 2.0088 25 8 0.3371 -9.5496 1.5332 26 6 2.2528 -7.3240 0.0076 27 1 -0.4851 0.8400 -0.0004 28 1 0.6240 -2.5574 -0.8879 29 1 0.6247 -2.5563 0.8920 30 1 3.1567 -3.4354 0.0029 31 1 4.4516 -4.7385 0.0129 32 1 6.0413 -6.6151 0.0062 33 1 5.2160 -8.9327 0.0096 34 1 1.6979 -9.8411 -0.5035 35 1 3.3782 -10.4280 -0.5026 36 1 3.8601 -10.7404 4.1294 37 1 3.3034 -12.3376 3.5359 38 1 1.1917 -7.5253 0.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897818104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:39 Heat of formation + Delta-G solvation = -61.656410 kcal Electronic energy + Delta-G solvation = -25233.496949 eV Core-core repulsion = 21360.882186 eV Total energy + Delta-G solvation = -3872.614764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.19849 -39.80019 -39.24874 -38.00991 -36.35625 -34.31434 -33.22653 -32.30051 -31.09683 -30.51614 -27.55136 -26.88382 -25.08721 -23.97753 -22.43928 -22.07293 -20.93619 -19.67180 -19.03068 -18.17805 -17.86050 -17.14641 -16.41070 -16.19329 -15.77284 -15.55923 -15.41482 -15.05845 -14.83008 -14.75353 -14.58662 -14.41650 -14.08431 -13.77016 -13.40953 -12.86822 -12.70921 -12.58593 -12.14784 -12.02080 -11.82562 -11.78169 -11.44090 -11.30545 -11.00320 -10.90743 -10.47468 -10.43867 -10.33948 -9.42791 -9.21966 -9.08867 -9.04748 -8.98060 -8.76030 -7.92252 -6.18306 -4.25715 0.22818 0.66595 0.76947 0.94140 1.20441 2.00814 2.20402 3.18395 3.23161 3.27668 3.29134 3.31540 3.94218 4.05933 4.20970 4.32654 4.36676 4.44192 4.56577 4.62831 4.88262 4.91187 5.09474 5.17832 5.19034 5.30924 5.47286 5.73410 5.86559 6.07068 6.27737 6.30390 6.36086 6.42633 6.75421 6.88133 7.27981 7.36467 7.48883 7.63055 7.94104 8.55618 8.73945 9.01757 9.40675 10.91903 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.002506 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.843755 B =11168.805238 C =11826.178671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.536 3.464 12 O -0.547 6.547 13 C -0.122 4.122 14 C -0.075 4.075 15 C -0.131 4.131 16 C -0.079 4.079 17 C -0.138 4.138 18 C 0.140 3.860 19 N -0.569 5.569 20 C 0.532 3.468 21 O -0.462 6.462 22 C -0.136 4.136 23 S -0.127 6.127 24 C 0.544 3.456 25 O -0.415 6.415 26 C -0.041 4.041 27 H 0.266 0.734 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.390 0.610 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -25.448 4.963 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.352 5.352 11 C 0.322 3.678 12 O -0.427 6.427 13 C -0.125 4.125 14 C -0.094 4.094 15 C -0.149 4.149 16 C -0.098 4.098 17 C -0.139 4.139 18 C 0.017 3.983 19 N -0.315 5.315 20 C 0.318 3.682 21 O -0.333 6.333 22 C -0.287 4.287 23 S 0.099 5.901 24 C 0.223 3.777 25 O -0.285 6.285 26 C -0.061 4.061 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.224 0.776 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.498 -25.335 5.424 27.595 hybrid contribution 1.648 1.224 -0.876 2.232 sum 11.146 -24.111 4.548 26.949 Atomic orbital electron populations 1.69971 1.06117 1.27375 1.48692 1.24952 0.94920 0.99465 0.94636 0.86406 0.79613 0.82596 0.78242 1.20427 1.20959 1.19730 1.21201 0.93236 0.90387 1.53487 0.91897 1.19166 0.88261 0.81744 0.97982 1.46427 1.11242 1.05940 1.71590 1.18228 0.87993 0.83296 0.78329 1.90753 1.16101 1.84835 1.50995 1.20325 0.93852 0.94488 1.03862 1.21534 0.92264 0.99916 0.95681 1.21091 0.99919 0.92214 1.01635 1.21273 0.94573 0.97303 0.96672 1.19762 0.93953 0.94081 1.06059 1.20855 1.04821 0.92901 0.79755 1.46510 1.13509 1.54043 1.17407 1.19647 0.83721 0.76735 0.88076 1.90826 1.22138 1.51792 1.68575 1.24501 0.97127 1.09292 0.97747 1.88082 1.13628 1.71937 1.16434 1.21833 0.84098 0.81281 0.90445 1.90998 1.30320 1.39728 1.67441 1.21296 1.00660 0.90720 0.93388 0.92379 0.95259 0.95280 0.77647 0.85021 0.85214 0.85253 0.87187 0.87013 0.82804 0.82838 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.70 -15.28 5.50 -62.43 -0.34 -15.63 16 11 C 0.54 11.44 7.77 -12.33 -0.10 11.35 16 12 O -0.55 -13.86 16.35 5.32 0.09 -13.78 16 13 C -0.12 -2.01 5.87 -104.97 -0.62 -2.63 16 14 C -0.07 -0.99 9.54 -39.19 -0.37 -1.36 16 15 C -0.13 -1.41 10.03 -39.64 -0.40 -1.80 16 16 C -0.08 -0.84 9.69 -39.49 -0.38 -1.22 16 17 C -0.14 -1.60 5.44 -104.69 -0.57 -2.17 16 18 C 0.14 1.29 5.31 -5.20 -0.03 1.26 16 19 N -0.57 -5.14 2.45 -120.79 -0.30 -5.44 16 20 C 0.53 4.01 7.79 -11.81 -0.09 3.92 16 21 O -0.46 -4.33 16.52 5.60 0.09 -4.23 16 22 C -0.14 -0.58 7.41 36.30 0.27 -0.31 16 23 S -0.13 -0.98 23.40 -107.50 -2.52 -3.49 16 24 C 0.54 5.81 8.34 53.47 0.45 6.25 16 25 O -0.41 -5.88 17.07 5.30 0.09 -5.79 16 26 C -0.04 -0.62 9.24 -39.19 -0.36 -0.98 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.39 7.18 6.36 -40.82 -0.26 6.92 16 31 H 0.13 1.55 6.41 -52.48 -0.34 1.22 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.16 7.66 -52.48 -0.40 0.76 16 34 H 0.11 0.99 7.55 -51.93 -0.39 0.60 16 35 H 0.11 0.83 7.40 -51.93 -0.38 0.44 16 36 H 0.15 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.15 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.14 2.34 7.46 -52.48 -0.39 1.94 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -35.15 351.41 -8.34 -43.48 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -3.81 Total: 3.69 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.65 Total: 5.50 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.10 Total: -46.49 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.27 Total: -23.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.52 Total: -3.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.15 -8.34 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897818104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.173 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds