Wall clock time and date at job start Tue Mar 31 2020 19:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00067 * 2 1 4 4 H 1.48504 * 109.47094 * 270.00106 * 3 2 1 5 5 H 1.48500 * 109.46824 * 29.99596 * 3 2 1 6 6 H 1.48501 * 109.47095 * 149.99940 * 3 2 1 7 7 C 1.37881 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99626 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46652 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99497 * 179.97438 * 10 9 7 12 12 O 1.21558 * 120.00375 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.00039 * 180.02562 * 11 10 9 14 14 C 1.39596 * 120.14303 * 0.20859 * 13 11 10 15 15 C 1.37935 * 119.85560 * 180.25487 * 14 13 11 16 16 C 1.38387 * 120.14051 * 359.51427 * 15 14 13 17 17 C 1.38336 * 120.29582 * 0.27962 * 16 15 14 18 18 C 1.50691 * 119.92818 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.47033 * 90.00152 * 18 17 16 20 20 C 1.32244 * 119.37021 * 269.74848 * 19 18 17 21 21 O 1.21234 * 123.10025 * 0.02562 * 20 19 18 22 22 C 1.51302 * 113.79815 * 179.83898 * 20 19 18 23 23 S 1.82471 * 103.00630 * 0.37036 * 22 20 19 24 24 C 1.33468 * 119.36957 * 90.02586 * 19 18 17 25 25 O 1.21580 * 126.16119 * 359.97402 * 24 19 18 26 26 C 1.37977 * 120.14092 * 359.95557 * 17 16 15 27 27 H 0.97002 * 120.00314 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46852 * 59.99648 * 9 7 2 29 29 H 1.09000 * 109.47102 * 300.00092 * 9 7 2 30 30 H 0.96996 * 120.00628 * 0.02562 * 10 9 7 31 31 H 1.08004 * 120.07609 * 0.04651 * 14 13 11 32 32 H 1.08002 * 119.93294 * 179.79870 * 15 14 13 33 33 H 1.08006 * 119.84850 * 180.25881 * 16 15 14 34 34 H 1.09001 * 109.47499 * 209.99775 * 18 17 16 35 35 H 1.08997 * 109.47573 * 329.99831 * 18 17 16 36 36 H 1.09000 * 110.88071 * 241.91182 * 22 20 19 37 37 H 1.09001 * 110.69302 * 118.74218 * 22 20 19 38 38 H 1.08004 * 120.07573 * 179.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7538 -4.8833 0.0044 12 8 0.5587 -5.1055 0.0046 13 6 2.7146 -6.0070 0.0059 14 6 4.0876 -5.7554 0.0101 15 6 4.9787 -6.8083 0.0062 16 6 4.5141 -8.1119 0.0084 17 6 3.1547 -8.3682 0.0086 18 6 2.6578 -9.7908 0.0103 19 7 2.4967 -10.2501 1.3922 20 6 3.5118 -10.8379 2.0028 21 8 4.5871 -11.0205 1.4735 22 6 3.2089 -11.2575 3.4246 23 16 1.4746 -10.7354 3.6462 24 6 1.3264 -10.0723 2.0088 25 8 0.3371 -9.5496 1.5332 26 6 2.2528 -7.3240 0.0076 27 1 -0.4851 0.8400 -0.0004 28 1 0.6240 -2.5574 -0.8879 29 1 0.6247 -2.5563 0.8920 30 1 3.1567 -3.4354 0.0029 31 1 4.4516 -4.7385 0.0129 32 1 6.0413 -6.6151 0.0062 33 1 5.2160 -8.9327 0.0096 34 1 1.6979 -9.8411 -0.5035 35 1 3.3782 -10.4280 -0.5026 36 1 3.8601 -10.7404 4.1294 37 1 3.3034 -12.3376 3.5359 38 1 1.1917 -7.5253 0.0073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897818104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:38 Heat of formation + Delta-G solvation = -86.940575 kcal Electronic energy + Delta-G solvation = -25234.593353 eV Core-core repulsion = 21360.882186 eV Total energy + Delta-G solvation = -3873.711167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.90835 -41.17513 -40.03645 -39.42809 -37.12829 -36.30104 -34.61996 -33.82594 -32.25335 -31.19763 -29.39690 -27.85184 -25.87673 -25.57507 -23.85337 -23.31427 -21.83294 -21.20524 -19.69894 -19.49705 -18.58894 -18.33196 -17.77863 -17.31521 -17.03892 -16.87904 -16.41163 -16.27446 -16.11463 -15.84535 -15.74073 -15.42504 -15.34011 -14.71220 -14.52602 -14.22152 -14.11951 -13.90281 -13.52587 -13.37563 -12.95807 -12.81051 -12.73627 -12.70561 -12.36768 -12.24552 -12.16216 -11.53546 -11.29687 -11.17038 -10.98868 -10.84699 -10.19477 -10.04663 -9.84355 -9.67577 -8.32065 -6.49890 -0.50196 -0.22822 -0.03594 0.15077 0.41324 1.32694 1.41804 1.44919 1.53538 1.56180 1.84858 2.24369 2.45906 2.71305 2.76116 3.02940 3.46327 3.62615 3.74859 3.87601 3.97310 4.00443 4.07222 4.21247 4.31791 4.39065 4.47515 4.68121 4.88297 5.03388 5.15991 5.25212 5.27632 5.29099 5.39181 5.45258 5.60432 5.72280 5.78423 5.79435 6.21794 6.58957 6.76375 7.17191 7.33353 8.80476 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.002506 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.843755 B =11168.805238 C =11826.178671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.533 3.467 12 O -0.601 6.601 13 C -0.149 4.149 14 C -0.073 4.073 15 C -0.116 4.116 16 C -0.061 4.061 17 C -0.130 4.130 18 C 0.138 3.862 19 N -0.570 5.570 20 C 0.532 3.468 21 O -0.475 6.475 22 C -0.117 4.117 23 S -0.124 6.124 24 C 0.534 3.466 25 O -0.468 6.468 26 C -0.056 4.056 27 H 0.270 0.730 28 H -0.011 1.011 29 H -0.012 1.012 30 H 0.408 0.592 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.183 0.817 37 H 0.191 0.809 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.315 -26.782 5.889 31.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.595 4.595 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.346 5.346 11 C 0.322 3.678 12 O -0.485 6.485 13 C -0.153 4.153 14 C -0.092 4.092 15 C -0.133 4.133 16 C -0.080 4.080 17 C -0.131 4.131 18 C 0.014 3.986 19 N -0.315 5.315 20 C 0.320 3.680 21 O -0.347 6.347 22 C -0.267 4.267 23 S 0.103 5.897 24 C 0.215 3.785 25 O -0.343 6.343 26 C -0.076 4.076 27 H 0.079 0.921 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.246 0.754 31 H 0.163 0.837 32 H 0.189 0.811 33 H 0.177 0.823 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.200 0.800 37 H 0.209 0.791 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.546 -26.715 6.372 31.078 hybrid contribution 0.149 1.449 -1.124 1.840 sum 14.695 -25.266 5.248 29.696 Atomic orbital electron populations 1.70146 1.08408 1.28713 1.49719 1.26122 0.95802 1.04073 0.93667 0.85105 0.78507 0.76603 0.78687 1.19482 1.20930 1.17644 1.21586 0.94369 0.90259 1.53294 0.89532 1.18619 0.88661 0.84176 0.94232 1.46107 1.11389 1.05155 1.71981 1.19069 0.88283 0.84155 0.76339 1.90711 1.18877 1.85642 1.53224 1.19927 0.94363 0.92727 1.08242 1.21693 0.90663 1.01672 0.95135 1.21517 1.01391 0.91220 0.99219 1.21645 0.94025 0.98296 0.94019 1.19931 0.94186 0.94220 1.04808 1.20891 1.05194 0.91959 0.80521 1.46576 1.13613 1.53996 1.17329 1.20091 0.82932 0.75927 0.89026 1.90825 1.22382 1.52344 1.69150 1.24774 0.94367 1.11765 0.95799 1.88106 1.16915 1.71181 1.13519 1.22284 0.83853 0.80714 0.91628 1.90978 1.32071 1.42035 1.69216 1.21143 0.99938 0.91412 0.95062 0.92148 0.99312 0.99402 0.75442 0.83675 0.81123 0.82331 0.87994 0.84413 0.79993 0.79128 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 42.54 29.54 68.60 2.03 44.56 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.56 -30.89 9.28 25.60 0.24 -30.65 16 8 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 9 C 0.27 15.24 5.43 85.63 0.46 15.70 16 10 N -0.70 -31.77 5.50 -469.70 -2.58 -34.35 16 11 C 0.53 24.41 7.77 86.79 0.67 25.08 16 12 O -0.60 -33.56 16.35 -3.90 -0.06 -33.62 16 13 C -0.15 -5.09 5.87 -20.09 -0.12 -5.21 16 14 C -0.07 -1.78 9.54 22.53 0.21 -1.57 16 15 C -0.12 -2.01 10.03 22.23 0.22 -1.78 16 16 C -0.06 -1.06 9.69 22.33 0.22 -0.84 16 17 C -0.13 -2.90 5.44 -19.91 -0.11 -3.01 16 18 C 0.14 2.42 5.31 85.63 0.45 2.87 16 19 N -0.57 -9.62 2.45 -774.86 -1.90 -11.51 16 20 C 0.53 6.31 7.79 88.24 0.69 7.00 16 21 O -0.47 -6.95 16.52 -2.89 -0.05 -7.00 16 22 C -0.12 -0.53 7.41 71.43 0.53 0.00 16 23 S -0.12 -1.73 23.40 -56.49 -1.32 -3.06 16 24 C 0.53 11.64 8.34 129.99 1.08 12.72 16 25 O -0.47 -14.55 17.07 -3.97 -0.07 -14.62 16 26 C -0.06 -1.76 9.24 22.53 0.21 -1.56 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.41 15.14 6.36 -92.71 -0.59 14.55 16 31 H 0.15 3.08 6.41 -2.91 -0.02 3.06 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.16 1.96 7.66 -2.91 -0.02 1.93 16 34 H 0.10 1.96 7.55 -2.39 -0.02 1.94 16 35 H 0.14 1.68 7.40 -2.39 -0.02 1.66 16 36 H 0.18 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.19 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.11 4.10 7.46 -2.91 -0.02 4.07 16 Total: -1.00 -84.68 351.41 2.10 -82.58 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.54 Total: 14.57 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 5.23 Total: 19.39 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -4.20 Total: -102.80 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.18 Total: -55.24 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -1.32 Total: -3.06 kcal Total: -84.68 2.10 -82.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897818104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.364 kcal (2) G-P(sol) polarization free energy of solvation -84.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds