Wall clock time and date at job start Tue Mar 31 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 C 1.38350 * 119.98160 * 94.72269 * 19 18 17 21 21 N 1.32152 * 120.01569 * 179.75861 * 20 19 18 22 22 C 1.32240 * 119.98238 * 0.51561 * 21 20 19 23 23 Cl 1.73605 * 120.01686 * 179.75593 * 22 21 20 24 24 C 1.38522 * 119.97010 * 359.74023 * 22 21 20 25 25 N 1.32117 * 119.97809 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 31 31 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 32 32 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 33 33 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 34 34 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 35 35 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 36 36 H 1.08004 * 119.99592 * 359.97438 * 20 19 18 37 37 H 1.07995 * 120.01593 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 6 -0.6455 1.3551 5.3350 21 7 -1.1165 2.0792 6.3351 22 6 -0.3770 2.2769 7.4135 23 17 -0.9924 3.2332 8.7252 24 6 0.8888 1.7203 7.4961 25 7 1.3561 0.9919 6.4978 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.4158 -2.7376 0.9718 31 1 1.6238 -2.2851 2.5003 32 1 0.6905 -2.3002 0.9847 33 1 1.9053 1.7753 3.4681 34 1 0.3187 -0.4565 3.7178 35 1 1.7669 -0.8422 4.6782 36 1 -1.2475 1.1976 4.4522 37 1 1.4935 1.8816 8.3762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921532468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:09 Heat of formation + Delta-G solvation = -26.906417 kcal Electronic energy + Delta-G solvation = -24486.955982 eV Core-core repulsion = 20645.707992 eV Total energy + Delta-G solvation = -3841.247989 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62910 -37.35611 -36.76600 -36.26017 -35.79177 -35.29325 -34.53574 -32.62126 -31.61936 -29.15307 -26.91071 -25.65183 -25.27028 -25.16360 -23.10533 -20.86587 -19.00885 -18.39614 -17.85169 -17.50112 -17.09472 -16.74620 -16.10403 -15.80881 -15.39021 -15.04084 -14.50603 -14.26282 -13.75783 -13.52174 -13.29361 -13.12629 -12.85224 -12.57169 -12.15455 -12.07941 -11.89918 -11.79809 -11.64641 -11.55750 -11.52668 -11.40169 -11.27871 -11.00752 -10.85037 -10.52765 -10.30955 -10.06998 -9.64155 -9.62872 -9.54019 -9.29515 -8.48408 -8.04737 -6.10525 -4.16990 0.04882 0.53280 1.12183 1.20095 3.00088 3.27673 3.34378 3.36714 3.45275 3.53228 3.76288 3.86814 4.04957 4.31655 4.37979 4.52071 4.91291 4.94462 5.16838 5.21402 5.29177 5.48951 5.64162 5.76447 6.06596 6.30904 6.56706 6.60771 6.69506 6.73230 6.92572 6.98574 7.14505 7.41076 7.58904 7.74987 8.00177 8.23662 8.85392 9.49133 10.95188 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.002824 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.586740 B = 9913.656518 C =10489.733810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.989 5.989 13 C 0.107 3.893 14 S 2.780 3.220 15 O -0.991 6.991 16 O -0.969 6.969 17 N -1.128 6.128 18 C 0.176 3.824 19 C 0.075 3.925 20 C 0.091 3.909 21 N -0.430 5.430 22 C 0.121 3.879 23 Cl -0.013 7.013 24 C 0.075 3.925 25 N -0.404 5.404 26 H 0.034 0.966 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.186 0.814 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 0.655 19.243 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.832 5.832 13 C -0.040 4.040 14 S 2.788 3.212 15 O -0.974 6.974 16 O -0.953 6.953 17 N -0.886 5.886 18 C 0.048 3.952 19 C -0.066 4.066 20 C -0.070 4.070 21 N -0.147 5.147 22 C -0.046 4.046 23 Cl 0.015 6.985 24 C -0.086 4.086 25 N -0.119 5.119 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.246 0.754 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.203 0.797 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.575 0.686 19.208 19.757 hybrid contribution -0.357 0.168 -0.680 0.786 sum -4.932 0.854 18.528 19.192 Atomic orbital electron populations 1.22127 0.98224 0.99748 1.00680 1.18751 0.91296 0.93023 0.80460 0.92306 1.21327 1.31605 1.13048 0.90000 0.91907 1.24908 0.94932 0.95016 0.99026 1.69853 1.36499 1.22738 1.23821 0.86496 0.78677 0.79960 0.82264 1.20561 1.19869 1.21194 1.57718 1.70073 1.19773 1.35634 1.21197 1.01953 0.82101 0.98717 1.02018 0.73549 0.73246 0.72343 1.93550 1.68784 1.60590 1.74464 1.93630 1.73963 1.56058 1.71635 1.56312 1.62536 1.17343 1.52458 1.20009 0.96290 0.91904 0.86958 1.22420 0.92320 0.97233 0.94677 1.23805 0.94418 0.91824 0.96945 1.67891 1.34701 1.12527 0.99532 1.22962 0.92647 0.96919 0.92119 1.98436 1.88235 1.69136 1.42654 1.23699 0.92595 0.93547 0.98762 1.68483 1.33314 1.10662 0.99490 0.94679 0.97029 0.88851 0.92681 0.93084 0.93334 0.90803 0.75448 0.89097 0.88096 0.79680 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.95 37.16 0.33 -2.77 16 2 C 0.27 6.18 2.62 -69.09 -0.18 6.00 16 3 H 0.06 1.52 6.91 -51.92 -0.36 1.16 16 4 C -0.52 -13.54 8.37 -34.44 -0.29 -13.83 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.99 -18.90 3.12 -115.86 -0.36 -19.26 16 13 C 0.11 1.71 9.53 59.85 0.57 2.29 16 14 S 2.78 50.95 6.09 -107.50 -0.66 50.29 16 15 O -0.99 -19.48 16.68 -57.17 -0.95 -20.44 16 16 O -0.97 -21.72 16.70 -57.17 -0.95 -22.67 16 17 N -1.13 -15.15 6.05 -11.65 -0.07 -15.22 16 18 C 0.18 1.89 6.57 -5.19 -0.03 1.85 16 19 C 0.08 0.77 6.18 -82.42 -0.51 0.26 16 20 C 0.09 0.85 10.86 -17.37 -0.19 0.66 16 21 N -0.43 -4.56 10.49 -10.17 -0.11 -4.67 16 22 C 0.12 1.15 7.29 -17.27 -0.13 1.03 16 23 Cl -0.01 -0.11 29.13 -51.86 -1.51 -1.62 16 24 C 0.08 0.67 11.01 -17.32 -0.19 0.48 16 25 N -0.40 -4.40 10.42 -9.26 -0.10 -4.50 16 26 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 32 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 33 H 0.41 5.07 8.64 -34.47 -0.30 4.77 16 34 H 0.09 0.76 8.05 -51.93 -0.42 0.35 16 35 H 0.10 1.11 7.75 -51.93 -0.40 0.71 16 36 H 0.19 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -32.82 344.21 -8.73 -41.55 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.10 Total: 1.61 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.71 Total: -2.44 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.01 Total: -67.18 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.91 Total: -43.11 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.66 Total: 50.29 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.51 Total: -1.62 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.82 -8.73 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921532468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.642 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds