Wall clock time and date at job start Tue Mar 31 2020 18:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 C 1.38350 * 119.98160 * 94.72269 * 19 18 17 21 21 N 1.32152 * 120.01569 * 179.75861 * 20 19 18 22 22 C 1.32240 * 119.98238 * 0.51561 * 21 20 19 23 23 Cl 1.73605 * 120.01686 * 179.75593 * 22 21 20 24 24 C 1.38522 * 119.97010 * 359.74023 * 22 21 20 25 25 N 1.32117 * 119.97809 * 359.97438 * 24 22 21 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 31 31 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 32 32 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 33 33 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 34 34 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 35 35 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 36 36 H 1.08004 * 119.99592 * 359.97438 * 20 19 18 37 37 H 1.07995 * 120.01593 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 6 -0.6455 1.3551 5.3350 21 7 -1.1165 2.0792 6.3351 22 6 -0.3770 2.2769 7.4135 23 17 -0.9924 3.2332 8.7252 24 6 0.8888 1.7203 7.4961 25 7 1.3561 0.9919 6.4978 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.4158 -2.7376 0.9718 31 1 1.6238 -2.2851 2.5003 32 1 0.6905 -2.3002 0.9847 33 1 1.9053 1.7753 3.4681 34 1 0.3187 -0.4565 3.7178 35 1 1.7669 -0.8422 4.6782 36 1 -1.2475 1.1976 4.4522 37 1 1.4935 1.8816 8.3762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921532468.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:09 Heat of formation + Delta-G solvation = -52.909872 kcal Electronic energy + Delta-G solvation = -24488.083576 eV Core-core repulsion = 20645.707992 eV Total energy + Delta-G solvation = -3842.375584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.35086 -38.34744 -38.03081 -37.85529 -36.88234 -36.74419 -35.31792 -34.48950 -32.44466 -30.85549 -27.77828 -27.22559 -26.92296 -25.97227 -23.90292 -22.56238 -20.37374 -19.16845 -18.91112 -18.57980 -18.50345 -18.26971 -17.50542 -16.98392 -16.54257 -16.24865 -15.81365 -15.18632 -15.06987 -14.81957 -14.68370 -14.34192 -14.08168 -13.70942 -13.39546 -13.28585 -13.15489 -13.09950 -12.98761 -12.92196 -12.89073 -12.77045 -12.54453 -12.52461 -12.29522 -12.18795 -12.08494 -11.85190 -11.09511 -10.63504 -10.46631 -10.36606 -10.31059 -9.63358 -8.08978 -6.21463 -0.72928 -0.28929 -0.14462 0.51254 1.43727 1.46548 1.54627 2.00679 2.38060 2.46648 2.66280 2.79932 3.07810 3.19950 3.21284 3.43548 3.61832 3.80896 4.09869 4.35530 4.37909 4.52390 4.68124 4.75471 4.90875 4.99195 5.07987 5.12689 5.21746 5.27975 5.66666 5.72834 5.90389 5.93213 5.98576 6.21496 6.36201 6.43285 6.86579 7.47449 8.94770 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.002824 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.586740 B = 9913.656518 C =10489.733810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.951 3.049 9 H -0.285 1.285 10 H -0.267 1.267 11 H -0.280 1.280 12 N -0.993 5.993 13 C 0.099 3.901 14 S 2.800 3.200 15 O -1.005 7.005 16 O -1.016 7.016 17 N -1.116 6.116 18 C 0.169 3.831 19 C 0.070 3.930 20 C 0.095 3.905 21 N -0.450 5.450 22 C 0.117 3.883 23 Cl -0.003 7.003 24 C 0.077 3.923 25 N -0.427 5.427 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.263 0.737 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.420 0.580 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.209 0.791 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.402 -0.104 20.470 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.211 1.211 10 H -0.191 1.191 11 H -0.205 1.205 12 N -0.835 5.835 13 C -0.047 4.047 14 S 2.809 3.191 15 O -0.988 6.988 16 O -1.000 7.000 17 N -0.877 5.877 18 C 0.043 3.957 19 C -0.072 4.072 20 C -0.066 4.066 21 N -0.167 5.167 22 C -0.051 4.051 23 Cl 0.025 6.975 24 C -0.084 4.084 25 N -0.142 5.142 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.254 0.746 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.226 0.774 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.565 -0.095 20.446 21.190 hybrid contribution -0.052 0.429 -0.910 1.008 sum -5.617 0.335 19.536 20.330 Atomic orbital electron populations 1.21919 0.96344 1.00525 1.00817 1.18420 0.92583 0.91248 0.80962 0.95737 1.21681 1.31429 1.12962 0.91572 0.92618 1.25585 0.95302 0.95736 1.01515 1.69967 1.37324 1.23694 1.24228 0.85673 0.77863 0.79282 0.79502 1.21125 1.19103 1.20539 1.57546 1.69989 1.21060 1.34935 1.21437 1.01953 0.80083 1.01209 1.01149 0.73452 0.72289 0.72216 1.93527 1.69585 1.61146 1.74579 1.93563 1.75637 1.57634 1.73199 1.55809 1.62367 1.17912 1.51657 1.20298 0.96818 0.91473 0.87116 1.22327 0.92719 0.97689 0.94485 1.24128 0.94247 0.90907 0.97294 1.67931 1.35351 1.13247 1.00185 1.23156 0.92902 0.96850 0.92180 1.98439 1.88137 1.68822 1.42091 1.24078 0.92608 0.92667 0.99046 1.68466 1.34092 1.11426 1.00216 0.93486 0.93697 0.91853 0.92740 0.94318 0.89620 0.89837 0.74563 0.86096 0.88218 0.77397 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.95 71.98 0.64 -4.89 16 2 C 0.27 12.52 2.62 44.24 0.12 12.64 16 3 H 0.02 1.31 6.91 -2.38 -0.02 1.29 16 4 C -0.54 -28.06 8.37 25.60 0.21 -27.84 16 5 H 0.06 2.91 7.65 -2.91 -0.02 2.89 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -50.00 11.32 21.45 0.24 -49.75 16 8 Si 0.95 42.52 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.99 -36.91 3.12 -520.46 -1.62 -38.53 16 13 C 0.10 2.96 9.53 127.77 1.22 4.18 16 14 S 2.80 100.78 6.09 -56.49 -0.34 100.43 16 15 O -1.01 -38.48 16.68 -128.00 -2.14 -40.62 16 16 O -1.02 -46.33 16.70 -128.00 -2.14 -48.46 16 17 N -1.12 -28.11 6.05 -190.78 -1.15 -29.27 16 18 C 0.17 3.19 6.57 85.63 0.56 3.75 16 19 C 0.07 1.27 6.18 42.54 0.26 1.53 16 20 C 0.09 1.54 10.86 84.67 0.92 2.46 16 21 N -0.45 -8.67 10.49 -186.08 -1.95 -10.62 16 22 C 0.12 2.01 7.29 84.70 0.62 2.63 16 23 Cl 0.00 -0.05 29.13 -2.72 -0.08 -0.13 16 24 C 0.08 1.22 11.01 84.72 0.93 2.16 16 25 N -0.43 -8.48 10.42 -183.20 -1.91 -10.39 16 26 H 0.05 1.75 6.66 -2.39 -0.02 1.73 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 29 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.91 7.79 -2.38 -0.02 1.90 16 32 H 0.08 2.34 6.43 -2.39 -0.02 2.33 16 33 H 0.42 9.76 8.64 -96.74 -0.84 8.92 16 34 H 0.12 1.56 8.05 -2.38 -0.02 1.54 16 35 H 0.10 1.94 7.75 -2.38 -0.02 1.92 16 36 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.21 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -71.04 344.21 -2.84 -73.88 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.29 Total: 10.87 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.94 Total: -1.96 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -6.40 Total: -138.57 kcal Atomic # 8 Polarization: -84.81 SS G_CDS: -4.27 Total: -89.08 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 100.78 SS G_CDS: -0.34 Total: 100.43 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -71.04 -2.84 -73.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921532468.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.974 kcal (2) G-P(sol) polarization free energy of solvation -71.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds