Wall clock time and date at job start Tue Mar 31 2020 18:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47061 * 2 1 4 4 C 1.50693 * 109.46950 * 120.00344 * 2 1 3 5 5 H 1.08002 * 120.00032 * 120.00183 * 4 2 1 6 6 C 1.37882 * 119.99986 * 299.99861 * 4 2 1 7 7 N 1.31507 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99755 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47536 * 59.99769 * 8 6 4 10 10 H 1.48500 * 109.47011 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47029 * 299.99627 * 8 6 4 12 12 N 1.46502 * 109.46816 * 240.00410 * 2 1 3 13 13 C 1.46498 * 120.00097 * 299.99454 * 12 2 1 14 14 S 1.65597 * 120.00100 * 120.00305 * 12 2 1 15 15 O 1.42104 * 106.39985 * 336.45577 * 14 12 2 16 16 O 1.42097 * 106.40081 * 203.53776 * 14 12 2 17 17 N 1.65598 * 107.22012 * 89.99459 * 14 12 2 18 18 C 1.46500 * 119.99758 * 65.00098 * 17 14 12 19 19 C 1.50706 * 109.46846 * 165.00192 * 18 17 14 20 20 C 1.38341 * 119.98610 * 95.02119 * 19 18 17 21 21 N 1.32144 * 120.01969 * 179.97438 * 20 19 18 22 22 C 1.32243 * 119.98398 * 359.97438 * 21 20 19 23 23 Cl 1.73606 * 120.01668 * 179.97438 * 22 21 20 24 24 C 1.38516 * 119.96514 * 359.97438 * 22 21 20 25 25 N 1.32111 * 119.98178 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47047 * 299.99567 * 1 2 3 27 27 H 1.09000 * 109.46925 * 59.99886 * 1 2 3 28 28 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00082 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47396 * 270.00921 * 13 12 2 31 31 H 1.09010 * 109.46937 * 30.00489 * 13 12 2 32 32 H 1.09001 * 109.47393 * 150.00144 * 13 12 2 33 33 H 0.97007 * 119.99862 * 245.00148 * 17 14 12 34 34 H 1.08996 * 109.47259 * 45.00362 * 18 17 14 35 35 H 1.08997 * 109.47077 * 284.99756 * 18 17 14 36 36 H 1.08001 * 119.99267 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.00907 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0077 10 1 1.8269 -0.4202 5.2204 11 1 1.8279 -2.5201 4.0080 12 7 2.0183 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1142 -2.2863 15 8 2.6903 1.4974 -2.1192 16 8 2.8227 -0.5644 -3.5259 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4440 -1.8416 19 6 6.6348 -1.3328 -1.7352 20 6 7.2504 -1.4426 -0.5012 21 7 8.5650 -1.3456 -0.4072 22 6 9.2922 -1.1441 -1.4932 23 17 11.0191 -1.0159 -1.3706 24 6 8.6752 -1.0353 -2.7286 25 7 7.3609 -1.1324 -2.8210 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7088 1.1611 3.4844 30 1 2.4157 -2.7376 -0.9718 31 1 0.6904 -2.3002 -0.9847 32 1 1.6238 -2.2851 -2.5003 33 1 5.0733 0.6551 -1.5282 34 1 4.8736 -1.9406 -2.7758 35 1 4.7540 -2.0247 -1.0019 36 1 6.6565 -1.6076 0.3856 37 1 9.2684 -0.8711 -3.6160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921532485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:14 Heat of formation + Delta-G solvation = -28.335770 kcal Electronic energy + Delta-G solvation = -24680.195816 eV Core-core repulsion = 20838.885845 eV Total energy + Delta-G solvation = -3841.309971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53298 -37.27776 -36.78365 -36.23400 -35.70114 -35.33014 -34.43736 -32.65980 -31.52253 -29.12643 -26.81197 -25.62144 -25.19304 -25.16323 -23.00209 -20.83555 -19.02914 -18.30249 -17.76214 -17.42652 -17.07788 -16.49902 -16.32102 -15.72551 -15.38868 -14.99801 -14.47458 -14.19385 -13.68105 -13.50982 -13.27366 -13.06881 -12.83880 -12.48253 -12.06652 -12.02387 -11.84557 -11.82758 -11.63949 -11.56080 -11.46552 -11.40305 -11.21557 -11.04971 -10.88040 -10.51582 -10.32174 -10.09839 -9.56943 -9.52754 -9.49974 -9.23546 -8.53361 -8.04274 -6.14259 -4.23493 0.14515 0.62708 1.17470 1.27627 3.07875 3.21309 3.27943 3.28682 3.48761 3.60764 3.86429 3.97010 4.06445 4.30531 4.42412 4.62082 4.93041 5.05636 5.16338 5.31143 5.40535 5.61091 5.75920 5.84277 6.10627 6.27693 6.58370 6.70495 6.79098 6.81899 7.02436 7.08371 7.23903 7.44548 7.57316 7.73214 7.99036 8.20446 8.79036 9.43256 10.90682 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.003875 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.854985 B = 7224.980470 C = 8923.301784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.784 3.216 15 O -0.976 6.976 16 O -0.994 6.994 17 N -1.123 6.123 18 C 0.178 3.822 19 C 0.076 3.924 20 C 0.093 3.907 21 N -0.431 5.431 22 C 0.121 3.879 23 Cl -0.015 7.015 24 C 0.074 3.926 25 N -0.405 5.405 26 H 0.093 0.907 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.188 0.812 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.235 -5.975 -7.776 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.050 4.050 14 S 2.793 3.207 15 O -0.961 6.961 16 O -0.977 6.977 17 N -0.881 5.881 18 C 0.050 3.950 19 C -0.066 4.066 20 C -0.068 4.068 21 N -0.147 5.147 22 C -0.047 4.047 23 Cl 0.013 6.987 24 C -0.088 4.088 25 N -0.121 5.121 26 H 0.112 0.888 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.205 0.795 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.882 -5.511 -8.460 16.367 hybrid contribution 0.985 -0.341 1.600 1.909 sum 13.866 -5.852 -6.861 16.541 Atomic orbital electron populations 1.22074 0.97996 0.99656 1.00876 1.18740 0.91884 0.92734 0.80130 0.92325 1.21319 1.32136 1.13103 0.90112 0.91962 1.24925 0.94938 0.94939 0.98993 1.69861 1.36026 1.22541 1.23983 0.86606 0.79125 0.79685 0.82200 1.20258 1.21279 1.20259 1.57693 1.64136 1.21518 1.39819 1.21317 1.02053 0.81656 0.99991 1.01796 0.72368 0.73250 0.73308 1.93610 1.83313 1.32313 1.86822 1.93540 1.85788 1.76348 1.42068 1.56095 1.32458 1.13858 1.85682 1.19999 0.85179 0.85362 1.04449 1.22426 0.98061 0.96205 0.89861 1.23862 0.89350 0.94356 0.99186 1.67896 1.07024 1.09078 1.30692 1.22953 0.89228 1.00597 0.91904 1.98430 1.06055 1.95739 1.98435 1.23672 0.91232 0.96879 0.97005 1.68475 1.05191 1.07158 1.31230 0.88844 0.96805 0.94768 0.92533 0.93835 0.90470 0.91915 0.75381 0.88251 0.88841 0.79506 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.95 37.16 0.33 -3.00 16 2 C 0.27 6.17 2.62 -69.08 -0.18 5.99 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.16 16 4 C -0.53 -12.68 8.37 -34.44 -0.29 -12.97 16 5 H 0.06 1.42 7.65 -52.49 -0.40 1.02 16 6 C 0.07 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 N -0.99 -18.84 3.12 -115.85 -0.36 -19.20 16 13 C 0.10 1.54 9.90 59.85 0.59 2.13 16 14 S 2.78 50.90 6.14 -107.50 -0.66 50.24 16 15 O -0.98 -21.34 16.70 -57.17 -0.95 -22.29 16 16 O -0.99 -19.09 16.21 -57.17 -0.93 -20.01 16 17 N -1.12 -16.36 6.05 -11.66 -0.07 -16.43 16 18 C 0.18 2.15 6.57 -5.19 -0.03 2.12 16 19 C 0.08 0.89 6.18 -82.42 -0.51 0.38 16 20 C 0.09 1.04 10.86 -17.38 -0.19 0.85 16 21 N -0.43 -5.19 10.49 -10.17 -0.11 -5.30 16 22 C 0.12 1.28 7.29 -17.27 -0.13 1.16 16 23 Cl -0.01 -0.13 29.13 -51.86 -1.51 -1.65 16 24 C 0.07 0.72 11.01 -17.33 -0.19 0.53 16 25 N -0.41 -4.79 10.42 -9.26 -0.10 -4.89 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.26 6.43 -51.92 -0.33 0.92 16 32 H 0.06 0.91 7.02 -51.93 -0.36 0.55 16 33 H 0.41 5.63 8.65 -34.47 -0.30 5.34 16 34 H 0.10 1.18 7.75 -51.93 -0.40 0.78 16 35 H 0.09 0.98 8.05 -51.93 -0.42 0.57 16 36 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -31.18 343.38 -8.66 -39.84 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.06 Total: 4.23 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.69 Total: -1.29 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.01 Total: -68.75 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -1.88 Total: -42.31 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 50.90 SS G_CDS: -0.66 Total: 50.24 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.18 -8.66 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921532485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.505 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds