Wall clock time and date at job start Tue Mar 31 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47061 * 2 1 4 4 C 1.50693 * 109.46950 * 120.00344 * 2 1 3 5 5 H 1.08002 * 120.00032 * 120.00183 * 4 2 1 6 6 C 1.37882 * 119.99986 * 299.99861 * 4 2 1 7 7 N 1.31507 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99755 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47536 * 59.99769 * 8 6 4 10 10 H 1.48500 * 109.47011 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47029 * 299.99627 * 8 6 4 12 12 N 1.46502 * 109.46816 * 240.00410 * 2 1 3 13 13 C 1.46498 * 120.00097 * 299.99454 * 12 2 1 14 14 S 1.65597 * 120.00100 * 120.00305 * 12 2 1 15 15 O 1.42104 * 106.39985 * 336.45577 * 14 12 2 16 16 O 1.42097 * 106.40081 * 203.53776 * 14 12 2 17 17 N 1.65598 * 107.22012 * 89.99459 * 14 12 2 18 18 C 1.46500 * 119.99758 * 65.00098 * 17 14 12 19 19 C 1.50706 * 109.46846 * 165.00192 * 18 17 14 20 20 C 1.38341 * 119.98610 * 95.02119 * 19 18 17 21 21 N 1.32144 * 120.01969 * 179.97438 * 20 19 18 22 22 C 1.32243 * 119.98398 * 359.97438 * 21 20 19 23 23 Cl 1.73606 * 120.01668 * 179.97438 * 22 21 20 24 24 C 1.38516 * 119.96514 * 359.97438 * 22 21 20 25 25 N 1.32111 * 119.98178 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47047 * 299.99567 * 1 2 3 27 27 H 1.09000 * 109.46925 * 59.99886 * 1 2 3 28 28 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00082 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47396 * 270.00921 * 13 12 2 31 31 H 1.09010 * 109.46937 * 30.00489 * 13 12 2 32 32 H 1.09001 * 109.47393 * 150.00144 * 13 12 2 33 33 H 0.97007 * 119.99862 * 245.00148 * 17 14 12 34 34 H 1.08996 * 109.47259 * 45.00362 * 18 17 14 35 35 H 1.08997 * 109.47077 * 284.99756 * 18 17 14 36 36 H 1.08001 * 119.99267 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.00907 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0079 9 1 3.8074 -1.1193 4.0077 10 1 1.8269 -0.4202 5.2204 11 1 1.8279 -2.5201 4.0080 12 7 2.0183 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1142 -2.2863 15 8 2.6903 1.4974 -2.1192 16 8 2.8227 -0.5644 -3.5259 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4440 -1.8416 19 6 6.6348 -1.3328 -1.7352 20 6 7.2504 -1.4426 -0.5012 21 7 8.5650 -1.3456 -0.4072 22 6 9.2922 -1.1441 -1.4932 23 17 11.0191 -1.0159 -1.3706 24 6 8.6752 -1.0353 -2.7286 25 7 7.3609 -1.1324 -2.8210 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7088 1.1611 3.4844 30 1 2.4157 -2.7376 -0.9718 31 1 0.6904 -2.3002 -0.9847 32 1 1.6238 -2.2851 -2.5003 33 1 5.0733 0.6551 -1.5282 34 1 4.8736 -1.9406 -2.7758 35 1 4.7540 -2.0247 -1.0019 36 1 6.6565 -1.6076 0.3856 37 1 9.2684 -0.8711 -3.6160 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921532485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:13 Heat of formation + Delta-G solvation = -52.384269 kcal Electronic energy + Delta-G solvation = -24681.238637 eV Core-core repulsion = 20838.885845 eV Total energy + Delta-G solvation = -3842.352792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36086 -38.35359 -38.03531 -37.85063 -36.89813 -36.73025 -35.32049 -34.45341 -32.44326 -30.86000 -27.77704 -27.23391 -26.89008 -25.98197 -23.90114 -22.55952 -20.41820 -19.17150 -18.87052 -18.60075 -18.38946 -18.21999 -17.61475 -16.97809 -16.52263 -16.26505 -15.79750 -15.20045 -15.02937 -14.87353 -14.58706 -14.42378 -14.07967 -13.59866 -13.42979 -13.30133 -13.17946 -13.13175 -12.97302 -12.90796 -12.86707 -12.70232 -12.55560 -12.53164 -12.30580 -12.20469 -12.11242 -11.81782 -11.13292 -10.58062 -10.43306 -10.37801 -10.31990 -9.61223 -8.03287 -6.17934 -0.72455 -0.26950 -0.14908 0.49765 1.51892 1.52911 1.59232 1.97554 2.37404 2.51212 2.64190 2.79154 3.06333 3.20937 3.26080 3.44010 3.62172 3.80420 4.16021 4.34804 4.36726 4.53540 4.70877 4.80898 4.89766 4.98892 5.01411 5.11322 5.22994 5.25321 5.66384 5.73076 5.88616 5.90212 5.99867 6.16483 6.35057 6.41960 6.92075 7.52250 9.01073 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.003875 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.854985 B = 7224.980470 C = 8923.301784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.993 5.993 13 C 0.088 3.912 14 S 2.803 3.197 15 O -1.017 7.017 16 O -1.002 7.002 17 N -1.116 6.116 18 C 0.173 3.827 19 C 0.071 3.929 20 C 0.092 3.908 21 N -0.452 5.452 22 C 0.116 3.884 23 Cl -0.002 7.002 24 C 0.079 3.921 25 N -0.424 5.424 26 H 0.068 0.932 27 H 0.017 0.983 28 H 0.047 0.953 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.418 0.582 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.202 0.798 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.766 -7.749 -7.956 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.223 1.223 11 H -0.194 1.194 12 N -0.835 5.835 13 C -0.057 4.057 14 S 2.812 3.188 15 O -1.002 7.002 16 O -0.986 6.986 17 N -0.877 5.877 18 C 0.046 3.954 19 C -0.070 4.070 20 C -0.069 4.069 21 N -0.168 5.168 22 C -0.051 4.051 23 Cl 0.026 6.974 24 C -0.082 4.082 25 N -0.139 5.139 26 H 0.087 0.913 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.218 0.782 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 14.415 -7.315 -8.659 18.338 hybrid contribution 0.614 0.196 1.569 1.696 sum 15.028 -7.118 -7.090 18.077 Atomic orbital electron populations 1.21975 0.98171 1.00162 0.99871 1.18392 0.91775 0.91433 0.81491 0.95788 1.21645 1.31441 1.13106 0.90253 0.90399 1.25681 0.95281 0.95552 1.01865 1.70017 1.37637 1.24201 1.24201 0.85646 0.78930 0.78688 0.78515 1.19261 1.22316 1.19390 1.57536 1.64855 1.22698 1.38440 1.21561 1.02690 0.80159 1.01280 1.01035 0.72826 0.72011 0.72956 1.93552 1.84380 1.34944 1.87276 1.93525 1.86331 1.76264 1.42452 1.55747 1.31097 1.15393 1.85424 1.20217 0.85696 0.83915 1.05538 1.22296 0.97633 0.96952 0.90125 1.24047 0.89269 0.94044 0.99495 1.67914 1.07524 1.09838 1.31546 1.23177 0.89831 1.00114 0.91998 1.98435 1.04933 1.95604 1.98417 1.24117 0.90739 0.95593 0.97790 1.68471 1.06165 1.07708 1.31586 0.91332 0.96354 0.93418 0.92972 0.91342 0.90855 0.90433 0.74770 0.87927 0.86908 0.78159 0.77286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.51 8.95 71.98 0.64 -5.87 16 2 C 0.27 12.57 2.62 44.24 0.12 12.69 16 3 H 0.02 1.28 6.91 -2.39 -0.02 1.27 16 4 C -0.53 -24.67 8.37 25.60 0.21 -24.45 16 5 H 0.08 3.34 7.65 -2.91 -0.02 3.32 16 6 C 0.02 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -49.68 11.32 21.45 0.24 -49.43 16 8 Si 0.96 39.26 29.54 68.60 2.03 41.29 16 9 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 10 H -0.30 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 12 N -0.99 -36.72 3.12 -520.43 -1.62 -38.35 16 13 C 0.09 2.62 9.90 127.77 1.26 3.88 16 14 S 2.80 100.57 6.14 -56.49 -0.35 100.22 16 15 O -1.02 -45.09 16.70 -128.00 -2.14 -47.23 16 16 O -1.00 -37.17 16.21 -128.00 -2.07 -39.24 16 17 N -1.12 -31.11 6.05 -190.79 -1.15 -32.26 16 18 C 0.17 3.81 6.57 85.63 0.56 4.38 16 19 C 0.07 1.52 6.18 42.54 0.26 1.78 16 20 C 0.09 1.87 10.86 84.67 0.92 2.79 16 21 N -0.45 -10.12 10.49 -186.10 -1.95 -12.07 16 22 C 0.12 2.26 7.29 84.70 0.62 2.87 16 23 Cl 0.00 -0.04 29.13 -2.72 -0.08 -0.12 16 24 C 0.08 1.38 11.01 84.72 0.93 2.31 16 25 N -0.42 -9.21 10.42 -183.20 -1.91 -11.12 16 26 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.99 6.66 -2.39 -0.02 1.98 16 29 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 2.23 6.43 -2.38 -0.02 2.22 16 32 H 0.08 2.07 7.02 -2.39 -0.02 2.05 16 33 H 0.42 11.06 8.65 -96.74 -0.84 10.22 16 34 H 0.10 2.21 7.75 -2.39 -0.02 2.20 16 35 H 0.11 2.04 8.05 -2.39 -0.02 2.02 16 36 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -66.07 343.38 -2.73 -68.80 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.29 Total: 17.90 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.98 Total: 1.61 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -6.40 Total: -143.23 kcal Atomic # 8 Polarization: -82.26 SS G_CDS: -4.21 Total: -86.47 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 100.57 SS G_CDS: -0.35 Total: 100.22 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -66.07 -2.73 -68.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921532485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.416 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds