Wall clock time and date at job start Tue Mar 31 2020 17:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39617 * 119.96238 * 260.27927 * 3 2 1 5 5 C 1.38002 * 120.03818 * 179.72285 * 4 3 2 6 6 F 1.35103 * 120.01730 * 180.29441 * 5 4 3 7 7 C 1.39926 * 119.95909 * 0.53236 * 5 4 3 8 8 C 1.47626 * 120.03615 * 179.76633 * 7 5 4 9 9 O 1.21580 * 120.00038 * 269.97639 * 8 7 5 10 10 N 1.34780 * 120.00117 * 89.97721 * 8 7 5 11 11 C 1.46496 * 119.99997 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47640 * 34.99895 * 11 10 8 13 13 C 1.50703 * 109.46943 * 154.99805 * 11 10 8 14 14 H 1.07998 * 120.00434 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99599 * 179.97438 * 13 11 10 16 16 N 1.31513 * 120.00635 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99634 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47275 * 90.00310 * 17 15 13 19 19 H 1.48503 * 109.46990 * 209.99945 * 17 15 13 20 20 H 1.48498 * 109.47465 * 329.99868 * 17 15 13 21 21 C 1.52996 * 109.47172 * 274.99608 * 11 10 8 22 22 F 1.39906 * 109.47174 * 59.99948 * 21 11 10 23 23 F 1.39895 * 109.47591 * 180.02562 * 21 11 10 24 24 F 1.39898 * 109.47277 * 300.00337 * 21 11 10 25 25 C 1.39926 * 119.92947 * 359.74107 * 7 5 4 26 26 F 1.35102 * 120.02257 * 180.02562 * 25 7 5 27 27 C 1.38003 * 119.95960 * 0.02562 * 25 7 5 28 28 H 1.08007 * 119.98012 * 359.97438 * 4 3 2 29 29 H 0.97003 * 119.99467 * 359.97438 * 10 8 7 30 30 H 0.96993 * 120.00125 * 179.97438 * 16 15 13 31 31 H 1.08005 * 119.98365 * 179.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2652 0.2052 1.1922 5 6 4.6452 0.2004 1.1950 6 9 5.3194 0.3925 2.3499 7 6 5.3457 0.0015 0.0001 8 6 6.8219 0.0012 0.0003 9 8 7.4301 1.0397 -0.1728 10 7 7.4956 -1.1502 0.1924 11 6 8.9606 -1.1504 0.1931 12 1 9.3239 -0.2233 0.6364 13 6 9.4624 -2.3220 0.9972 14 1 8.7603 -2.9990 1.4609 15 6 10.8178 -2.5301 1.1399 16 7 11.6729 -1.7066 0.5740 17 14 11.4398 -3.9828 2.1361 18 1 11.6047 -5.1596 1.2454 19 1 12.7480 -3.6389 2.7491 20 1 10.4614 -4.3049 3.2057 21 6 9.4713 -1.2625 -1.2448 22 9 9.0054 -0.1749 -1.9913 23 9 10.8702 -1.2633 -1.2441 24 9 9.0051 -2.4525 -1.8138 25 6 4.6454 -0.1976 -1.1948 26 9 5.3199 -0.3904 -2.3495 27 6 3.2654 -0.1971 -1.1932 28 1 2.7241 0.3632 2.1135 29 1 7.0104 -1.9787 0.3308 30 1 12.6264 -1.8529 0.6748 31 1 2.7245 -0.3503 -2.1154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807104.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:10 Heat of formation + Delta-G solvation = -217.545023 kcal Electronic energy + Delta-G solvation = -28860.735755 eV Core-core repulsion = 23749.830932 eV Total energy + Delta-G solvation = -5110.904823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.048 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.44125 -50.25860 -50.23038 -48.07421 -47.74801 -41.13695 -39.91107 -37.52660 -36.62680 -34.57356 -33.02086 -31.78832 -30.31930 -26.78059 -26.41607 -24.20443 -23.65537 -21.99856 -20.80441 -19.95443 -18.94262 -18.83137 -18.75996 -18.52727 -17.78599 -17.68148 -17.25266 -17.01600 -16.86723 -16.53166 -16.52335 -15.91988 -15.41729 -15.10265 -15.04973 -14.98122 -14.72180 -14.64799 -14.51144 -14.46068 -14.31246 -14.05923 -13.91924 -13.56541 -13.51082 -13.18733 -13.09047 -12.92800 -12.76901 -12.66066 -12.23559 -11.61266 -11.29565 -10.71062 -10.36145 -10.24609 -10.06447 -8.22455 -6.54011 -0.95786 -0.30110 1.22056 1.38197 1.42066 1.48469 1.49423 1.60412 1.92553 2.19931 2.37370 2.42287 2.48838 2.70749 2.92675 3.13621 3.31241 3.53703 3.66423 3.75231 3.82638 3.99571 4.14257 4.42587 4.44243 4.64594 4.79200 4.83366 5.21248 5.28904 5.47529 5.62099 6.25168 6.42468 6.50765 6.99812 7.19353 8.70266 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003875 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.496837 B = 7224.703470 C = 7943.201390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.285 3.715 3 C 0.061 3.939 4 C -0.087 4.087 5 C 0.160 3.840 6 F -0.123 7.123 7 C -0.180 4.180 8 C 0.550 3.450 9 O -0.556 6.556 10 N -0.689 5.689 11 C 0.250 3.750 12 H 0.052 0.948 13 C -0.562 4.562 14 H 0.095 0.905 15 C 0.016 3.984 16 N -0.873 5.873 17 Si 0.984 3.016 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.255 1.255 21 C 0.413 3.587 22 F -0.219 7.219 23 F -0.149 7.149 24 F -0.201 7.201 25 C 0.155 3.845 26 F -0.127 7.127 27 C -0.088 4.088 28 H 0.193 0.807 29 H 0.416 0.584 30 H 0.269 0.731 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.453 -0.272 0.483 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.031 4.031 3 C 0.057 3.943 4 C -0.108 4.108 5 C 0.140 3.860 6 F -0.101 7.101 7 C -0.186 4.186 8 C 0.335 3.665 9 O -0.434 6.434 10 N -0.339 5.339 11 C 0.144 3.856 12 H 0.070 0.930 13 C -0.599 4.599 14 H 0.113 0.887 15 C -0.189 4.189 16 N -0.507 5.507 17 Si 0.807 3.193 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.179 1.179 21 C 0.357 3.643 22 F -0.201 7.201 23 F -0.130 7.130 24 F -0.183 7.183 25 C 0.135 3.865 26 F -0.105 7.105 27 C -0.109 4.109 28 H 0.211 0.789 29 H 0.253 0.747 30 H 0.079 0.921 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -17.493 0.510 0.306 17.503 hybrid contribution 1.712 -0.721 -0.108 1.861 sum -15.780 -0.211 0.197 15.783 Atomic orbital electron populations 1.81373 1.12629 1.08436 1.07582 1.24935 0.91546 0.93343 0.93314 1.15141 0.84271 1.01881 0.92989 1.21272 0.89954 0.99047 1.00521 1.17010 0.89880 0.99528 0.79587 1.91619 1.80594 1.91927 1.46008 1.20142 0.93094 1.10308 0.95076 1.18460 0.87477 0.84048 0.76493 1.90829 1.70106 1.32937 1.49516 1.45941 1.07029 1.10382 1.70554 1.19448 0.77622 1.01420 0.87132 0.93003 1.21206 0.93121 1.11275 1.34253 0.88700 1.25992 0.96757 1.00043 0.96126 1.70520 1.03313 1.37466 1.39425 0.85148 0.77825 0.77772 0.78541 1.19968 1.20850 1.17903 1.23255 0.77566 0.71797 0.91660 1.93072 1.89165 1.57026 1.80796 1.93384 1.27614 1.95834 1.96156 1.92994 1.88972 1.48947 1.87387 1.17086 0.89996 0.99709 0.79749 1.91621 1.80650 1.91965 1.46270 1.21252 0.89892 0.99230 1.00545 0.78937 0.74653 0.92060 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.56 18.54 19.00 0.35 -7.20 16 2 C 0.28 3.53 15.31 88.33 1.35 4.88 16 3 C 0.06 0.64 5.73 -21.37 -0.12 0.52 16 4 C -0.09 -0.99 9.71 22.55 0.22 -0.77 16 5 C 0.16 3.28 7.28 22.62 0.16 3.44 16 6 F -0.12 -3.11 16.82 44.97 0.76 -2.35 16 7 C -0.18 -4.79 5.64 -19.98 -0.11 -4.91 16 8 C 0.55 21.26 6.05 86.72 0.52 21.78 16 9 O -0.56 -26.44 15.68 -3.97 -0.06 -26.50 16 10 N -0.69 -27.39 4.98 -449.19 -2.24 -29.62 16 11 C 0.25 12.32 2.21 44.25 0.10 12.42 16 12 H 0.05 2.93 7.58 -2.39 -0.02 2.91 16 13 C -0.56 -27.62 8.47 25.60 0.22 -27.41 16 14 H 0.10 4.25 7.74 -2.91 -0.02 4.23 16 15 C 0.02 0.83 5.20 84.66 0.44 1.27 16 16 N -0.87 -47.55 9.50 21.45 0.20 -47.34 16 17 Si 0.98 39.52 29.54 68.60 2.03 41.54 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 C 0.41 21.15 2.81 71.98 0.20 21.36 16 22 F -0.22 -11.20 15.67 44.97 0.70 -10.49 16 23 F -0.15 -8.28 12.91 44.97 0.58 -7.70 16 24 F -0.20 -9.69 16.94 44.97 0.76 -8.93 16 25 C 0.15 3.33 7.28 22.62 0.16 3.49 16 26 F -0.13 -3.47 16.82 44.97 0.76 -2.72 16 27 C -0.09 -1.06 9.71 22.55 0.22 -0.85 16 28 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 29 H 0.42 13.79 8.52 -92.71 -0.79 13.00 16 30 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -68.04 312.36 7.68 -60.36 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.47 Total: 5.73 kcal Atomic # 6 Polarization: 31.86 SS G_CDS: 3.37 Total: 35.22 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.68 Total: -84.17 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.06 Total: -26.50 kcal Atomic # 9 Polarization: -35.75 SS G_CDS: 3.56 Total: -32.19 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.54 kcal Total: -68.04 7.68 -60.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807104.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.180 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds