Wall clock time and date at job start Tue Mar 31 2020 17:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48494 * 109.47167 * 265.38813 * 3 2 1 5 5 H 1.48500 * 109.46746 * 25.38659 * 3 2 1 6 6 H 1.48500 * 109.46849 * 145.38313 * 3 2 1 7 7 C 1.38808 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00283 * 343.43580 * 7 2 1 9 9 N 1.36940 * 119.99639 * 163.43840 * 7 2 1 10 10 C 1.48146 * 127.83575 * 160.87094 * 9 7 2 11 11 C 1.54383 * 104.61745 * 140.41388 * 10 9 7 12 12 H 1.09011 * 117.61582 * 242.76480 * 11 10 9 13 13 C 1.54286 * 104.96253 * 23.86036 * 11 10 9 14 14 H 1.09002 * 121.81506 * 222.17642 * 13 11 10 15 15 C 1.48145 * 127.83883 * 340.86145 * 9 7 2 16 16 C 1.53000 * 118.12808 * 87.18803 * 11 10 9 17 17 H 1.09002 * 117.44208 * 16.06091 * 16 11 10 18 18 N 1.46501 * 117.44539 * 160.80867 * 16 11 10 19 19 C 1.34778 * 119.99804 * 205.00206 * 18 16 11 20 20 O 1.21698 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.46686 * 119.99670 * 180.02562 * 19 18 16 22 22 C 1.34405 * 126.62989 * 180.02562 * 21 19 18 23 23 C 1.46371 * 118.08865 * 179.97438 * 22 21 19 24 24 C 1.38766 * 135.98079 * 179.97438 * 23 22 21 25 25 S 1.69813 * 111.85133 * 179.97438 * 24 23 22 26 26 C 1.75138 * 92.62600 * 0.02562 * 25 24 23 27 27 C 1.34255 * 110.73025 * 359.97438 * 26 25 24 28 28 S 1.77064 * 126.63454 * 359.94796 * 21 19 18 29 29 H 0.97003 * 120.00670 * 0.02562 * 1 2 3 30 30 H 1.08990 * 110.40849 * 21.62447 * 10 9 7 31 31 H 1.09003 * 110.50371 * 259.24095 * 10 9 7 32 32 H 1.09003 * 110.41065 * 338.37789 * 15 9 7 33 33 H 1.09005 * 110.40684 * 100.68538 * 15 9 7 34 34 H 0.96999 * 119.99591 * 24.99861 * 18 16 11 35 35 H 1.07997 * 120.95281 * 359.94679 * 22 21 19 36 36 H 1.07999 * 124.07501 * 359.97438 * 24 23 22 37 37 H 1.08008 * 124.63682 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5951 1.9902 -1.3955 5 1 1.4021 2.6788 0.6003 6 1 3.4955 1.4704 0.7954 7 6 2.0102 -1.2021 -0.0005 8 1 1.5039 -2.1182 0.2657 9 7 3.3370 -1.2265 -0.3386 10 6 4.3320 -2.2822 -0.0384 11 6 5.1891 -2.3851 -1.3183 12 1 5.1761 -3.3308 -1.8605 13 6 5.0380 -1.0144 -2.0102 14 1 4.9008 -0.9268 -3.0880 15 6 4.1029 -0.2033 -1.0877 16 6 6.3949 -1.4534 -1.4559 17 1 6.7522 -0.9577 -0.5532 18 7 7.4303 -1.8272 -2.4226 19 6 8.6937 -1.3868 -2.2608 20 8 8.9744 -0.6782 -1.3120 21 6 9.7303 -1.7606 -3.2291 22 6 11.0246 -1.3997 -3.1977 23 6 11.9009 -1.8830 -4.2658 24 6 13.2427 -1.7487 -4.5932 25 16 13.6348 -2.5948 -6.0123 26 6 11.9925 -3.1662 -6.2215 27 6 11.2028 -2.7141 -5.2343 28 16 9.5188 -2.7760 -4.6641 29 1 -0.4851 0.8400 -0.0004 30 1 3.8321 -3.2299 0.1615 31 1 4.9509 -1.9932 0.8111 32 1 3.4301 0.4175 -1.6794 33 1 4.6840 0.4139 -0.4023 34 1 7.2064 -2.3917 -3.1790 35 1 11.4069 -0.7709 -2.4073 36 1 13.9521 -1.1752 -4.0151 37 1 11.6606 -3.7967 -7.0331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961224178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:39 Heat of formation + Delta-G solvation = 96.146664 kcal Electronic energy + Delta-G solvation = -22328.401822 eV Core-core repulsion = 18905.382784 eV Total energy + Delta-G solvation = -3423.019038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13419 -38.89227 -38.28242 -34.75971 -33.59088 -32.67247 -30.84457 -29.71912 -27.83160 -26.51816 -25.24155 -23.24699 -21.79118 -20.90432 -20.70774 -19.70134 -19.37830 -18.36198 -18.03957 -16.99186 -16.50149 -16.20971 -15.26880 -15.13576 -14.97064 -14.38637 -14.15703 -14.12637 -13.70772 -13.58223 -13.42323 -12.97248 -12.51476 -12.50069 -12.29557 -11.80839 -11.69865 -11.42433 -11.23569 -11.05943 -10.89959 -10.78878 -10.34036 -10.25043 -10.19281 -10.06596 -9.60248 -9.35309 -8.83118 -8.79172 -8.59332 -7.92651 -7.13936 -5.94214 -3.28853 -0.22814 0.44991 0.93241 1.04796 1.42796 1.94035 2.01059 2.76364 2.92204 3.33249 3.48828 3.50241 4.04367 4.04373 4.18199 4.52873 4.68588 4.79681 4.80550 4.93318 5.06993 5.08368 5.17259 5.31391 5.41958 5.49113 5.53590 5.67448 5.68255 5.73064 5.93526 6.21311 6.45969 6.49705 6.53345 6.63334 6.75306 7.26973 7.57344 7.93379 8.30364 8.76089 9.64488 10.17891 11.21820 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.002144 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.499047 B =13056.616858 C =13301.313420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.096 0.904 9 N -0.604 5.604 10 C 0.158 3.842 11 C -0.174 4.174 12 H 0.112 0.888 13 C -0.173 4.173 14 H 0.111 0.889 15 C 0.129 3.871 16 C 0.097 3.903 17 H 0.137 0.863 18 N -0.687 5.687 19 C 0.599 3.401 20 O -0.521 6.521 21 C -0.188 4.188 22 C -0.027 4.027 23 C -0.121 4.121 24 C -0.220 4.220 25 S 0.269 5.731 26 C -0.211 4.211 27 C -0.128 4.128 28 S 0.073 5.927 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.401 0.599 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.649 -7.317 -14.650 33.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.113 0.887 9 N -0.328 5.328 10 C 0.032 3.968 11 C -0.195 4.195 12 H 0.130 0.870 13 C -0.195 4.195 14 H 0.129 0.871 15 C 0.004 3.996 16 C -0.008 4.008 17 H 0.154 0.846 18 N -0.335 5.335 19 C 0.383 3.617 20 O -0.398 6.398 21 C -0.308 4.308 22 C -0.061 4.061 23 C -0.138 4.138 24 C -0.360 4.360 25 S 0.537 5.463 26 C -0.356 4.356 27 C -0.252 4.252 28 S 0.328 5.672 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.235 0.765 35 H 0.170 0.830 36 H 0.192 0.808 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 29.683 -7.563 -15.221 34.205 hybrid contribution 0.185 1.558 0.819 1.770 sum 29.869 -6.005 -14.402 33.699 Atomic orbital electron populations 1.69769 1.05419 1.26617 1.53931 1.25016 0.95299 0.97535 1.00102 0.86917 0.79358 0.84354 0.77557 1.21347 1.22996 1.19514 1.18654 0.80935 0.95090 1.41590 0.88667 1.45538 1.06153 1.19281 1.61857 1.21131 0.89972 0.93793 0.91944 1.24343 0.98435 0.94579 1.02162 0.86992 1.24387 0.96273 0.98880 0.99919 0.87090 1.21680 0.92759 0.92334 0.92863 1.21897 0.82248 1.02480 0.94209 0.84553 1.45173 1.07769 1.51912 1.28621 1.16657 0.81236 0.79941 0.83822 1.90868 1.81093 1.37079 1.30784 1.23798 0.97735 1.07709 1.01536 1.21193 0.90801 0.97403 0.96653 1.20474 0.93096 1.03154 0.97103 1.25672 0.98699 1.07500 1.04155 1.82754 1.06701 1.40145 1.16683 1.24719 0.96664 1.10021 1.04211 1.22958 0.98749 1.04111 0.99362 1.84232 1.04100 1.56378 1.22478 0.92619 0.91797 0.94777 0.90919 0.94377 0.76452 0.83050 0.80847 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.27 13.97 55.49 0.78 -27.49 16 2 C 0.02 0.55 5.49 -17.43 -0.10 0.45 16 3 Si 0.89 22.83 24.49 -169.99 -4.16 18.67 16 4 H -0.29 -7.09 6.35 56.52 0.36 -6.73 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.27 -6.82 6.33 56.52 0.36 -6.47 16 7 C -0.24 -6.69 10.78 -15.06 -0.16 -6.85 16 8 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16 9 N -0.60 -14.63 3.19 -168.87 -0.54 -15.17 16 10 C 0.16 3.08 7.04 -2.41 -0.02 3.07 16 11 C -0.17 -2.83 7.05 -89.22 -0.63 -3.45 16 12 H 0.11 1.58 8.14 -51.92 -0.42 1.15 16 13 C -0.17 -3.03 7.06 -89.22 -0.63 -3.66 16 14 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 15 C 0.13 2.85 4.49 -2.41 -0.01 2.83 16 16 C 0.10 1.52 5.98 -67.93 -0.41 1.12 16 17 H 0.14 2.35 7.40 -51.93 -0.38 1.97 16 18 N -0.69 -9.10 5.56 -55.11 -0.31 -9.41 16 19 C 0.60 8.53 7.79 -12.85 -0.10 8.43 16 20 O -0.52 -9.11 16.42 5.19 0.09 -9.02 16 21 C -0.19 -2.23 6.51 -37.53 -0.24 -2.48 16 22 C -0.03 -0.29 10.01 -37.66 -0.38 -0.67 16 23 C -0.12 -1.14 6.54 -103.55 -0.68 -1.82 16 24 C -0.22 -1.47 11.02 30.93 0.34 -1.12 16 25 S 0.27 1.26 22.97 -107.50 -2.47 -1.21 16 26 C -0.21 -1.40 11.15 29.33 0.33 -1.07 16 27 C -0.13 -1.18 7.19 -38.11 -0.27 -1.45 16 28 S 0.07 0.72 22.20 -107.50 -2.39 -1.67 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.71 5.06 -51.93 -0.26 1.45 16 33 H 0.04 0.85 6.79 -51.93 -0.35 0.50 16 34 H 0.40 4.39 8.07 -40.82 -0.33 4.06 16 35 H 0.15 1.54 8.02 -52.49 -0.42 1.12 16 36 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.17 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -33.60 337.07 -10.81 -44.41 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.93 Total: 2.50 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.96 Total: -6.68 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.07 Total: -52.07 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.16 Total: 18.67 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -4.86 Total: -2.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.60 -10.81 -44.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961224178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.556 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds