Wall clock time and date at job start Tue Mar 31 2020 17:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48494 * 109.47167 * 265.38813 * 3 2 1 5 5 H 1.48500 * 109.46746 * 25.38659 * 3 2 1 6 6 H 1.48500 * 109.46849 * 145.38313 * 3 2 1 7 7 C 1.38808 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00283 * 343.43580 * 7 2 1 9 9 N 1.36940 * 119.99639 * 163.43840 * 7 2 1 10 10 C 1.48146 * 127.83575 * 160.87094 * 9 7 2 11 11 C 1.54383 * 104.61745 * 140.41388 * 10 9 7 12 12 H 1.09011 * 117.61582 * 242.76480 * 11 10 9 13 13 C 1.54286 * 104.96253 * 23.86036 * 11 10 9 14 14 H 1.09002 * 121.81506 * 222.17642 * 13 11 10 15 15 C 1.48145 * 127.83883 * 340.86145 * 9 7 2 16 16 C 1.53000 * 118.12808 * 87.18803 * 11 10 9 17 17 H 1.09002 * 117.44208 * 16.06091 * 16 11 10 18 18 N 1.46501 * 117.44539 * 160.80867 * 16 11 10 19 19 C 1.34778 * 119.99804 * 205.00206 * 18 16 11 20 20 O 1.21698 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.46686 * 119.99670 * 180.02562 * 19 18 16 22 22 C 1.34405 * 126.62989 * 180.02562 * 21 19 18 23 23 C 1.46371 * 118.08865 * 179.97438 * 22 21 19 24 24 C 1.38766 * 135.98079 * 179.97438 * 23 22 21 25 25 S 1.69813 * 111.85133 * 179.97438 * 24 23 22 26 26 C 1.75138 * 92.62600 * 0.02562 * 25 24 23 27 27 C 1.34255 * 110.73025 * 359.97438 * 26 25 24 28 28 S 1.77064 * 126.63454 * 359.94796 * 21 19 18 29 29 H 0.97003 * 120.00670 * 0.02562 * 1 2 3 30 30 H 1.08990 * 110.40849 * 21.62447 * 10 9 7 31 31 H 1.09003 * 110.50371 * 259.24095 * 10 9 7 32 32 H 1.09003 * 110.41065 * 338.37789 * 15 9 7 33 33 H 1.09005 * 110.40684 * 100.68538 * 15 9 7 34 34 H 0.96999 * 119.99591 * 24.99861 * 18 16 11 35 35 H 1.07997 * 120.95281 * 359.94679 * 22 21 19 36 36 H 1.07999 * 124.07501 * 359.97438 * 24 23 22 37 37 H 1.08008 * 124.63682 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5951 1.9902 -1.3955 5 1 1.4021 2.6788 0.6003 6 1 3.4955 1.4704 0.7954 7 6 2.0102 -1.2021 -0.0005 8 1 1.5039 -2.1182 0.2657 9 7 3.3370 -1.2265 -0.3386 10 6 4.3320 -2.2822 -0.0384 11 6 5.1891 -2.3851 -1.3183 12 1 5.1761 -3.3308 -1.8605 13 6 5.0380 -1.0144 -2.0102 14 1 4.9008 -0.9268 -3.0880 15 6 4.1029 -0.2033 -1.0877 16 6 6.3949 -1.4534 -1.4559 17 1 6.7522 -0.9577 -0.5532 18 7 7.4303 -1.8272 -2.4226 19 6 8.6937 -1.3868 -2.2608 20 8 8.9744 -0.6782 -1.3120 21 6 9.7303 -1.7606 -3.2291 22 6 11.0246 -1.3997 -3.1977 23 6 11.9009 -1.8830 -4.2658 24 6 13.2427 -1.7487 -4.5932 25 16 13.6348 -2.5948 -6.0123 26 6 11.9925 -3.1662 -6.2215 27 6 11.2028 -2.7141 -5.2343 28 16 9.5188 -2.7760 -4.6641 29 1 -0.4851 0.8400 -0.0004 30 1 3.8321 -3.2299 0.1615 31 1 4.9509 -1.9932 0.8111 32 1 3.4301 0.4175 -1.6794 33 1 4.6840 0.4139 -0.4023 34 1 7.2064 -2.3917 -3.1790 35 1 11.4069 -0.7709 -2.4073 36 1 13.9521 -1.1752 -4.0151 37 1 11.6606 -3.7967 -7.0331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961224178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:38 Heat of formation + Delta-G solvation = 73.746675 kcal Electronic energy + Delta-G solvation = -22329.373158 eV Core-core repulsion = 18905.382784 eV Total energy + Delta-G solvation = -3423.990374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36590 -40.13512 -39.04193 -36.28545 -34.62708 -34.17100 -32.63872 -30.26483 -29.46390 -27.99225 -26.48271 -24.09584 -23.23698 -22.22135 -21.93428 -21.16080 -20.06469 -19.27264 -18.96448 -18.58164 -17.84067 -17.07196 -17.00799 -16.24058 -15.89909 -15.54966 -15.38435 -15.25179 -14.88151 -14.77941 -14.64150 -14.29807 -13.86649 -13.83614 -13.44372 -13.17747 -13.08663 -12.70243 -12.47573 -12.28539 -12.18320 -12.11227 -11.82156 -11.59017 -11.53473 -11.41255 -11.00777 -10.83517 -10.81794 -9.95379 -9.21877 -9.16930 -8.57180 -8.18777 -5.49441 -0.88462 -0.14074 0.28427 0.53589 0.82087 1.26878 1.28363 1.35574 1.37673 1.45242 1.67524 1.93307 2.37895 2.70206 3.01921 3.23760 3.35220 3.51303 3.65689 3.68700 3.92003 3.95689 4.21739 4.24972 4.29563 4.44338 4.57523 4.63600 4.67257 4.72536 4.77450 4.91450 4.93985 5.03620 5.09824 5.18266 5.33024 5.56824 6.08667 6.21934 6.64571 6.87605 7.46059 8.10089 9.00982 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.002144 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.499047 B =13056.616858 C =13301.313420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.040 4.040 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.307 1.307 6 H -0.265 1.265 7 C -0.224 4.224 8 H 0.068 0.932 9 N -0.625 5.625 10 C 0.150 3.850 11 C -0.156 4.156 12 H 0.143 0.857 13 C -0.178 4.178 14 H 0.131 0.869 15 C 0.124 3.876 16 C 0.118 3.882 17 H 0.122 0.878 18 N -0.676 5.676 19 C 0.601 3.399 20 O -0.562 6.562 21 C -0.220 4.220 22 C -0.016 4.016 23 C -0.160 4.160 24 C -0.218 4.218 25 S 0.357 5.643 26 C -0.219 4.219 27 C -0.152 4.152 28 S 0.076 5.924 29 H 0.263 0.737 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.035 0.965 34 H 0.415 0.585 35 H 0.149 0.851 36 H 0.195 0.805 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.676 -8.156 -17.128 38.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.234 4.234 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.236 1.236 6 H -0.190 1.190 7 C -0.352 4.352 8 H 0.086 0.914 9 N -0.350 5.350 10 C 0.026 3.974 11 C -0.177 4.177 12 H 0.161 0.839 13 C -0.199 4.199 14 H 0.149 0.851 15 C -0.001 4.001 16 C 0.011 3.989 17 H 0.140 0.860 18 N -0.324 5.324 19 C 0.388 3.612 20 O -0.442 6.442 21 C -0.339 4.339 22 C -0.051 4.051 23 C -0.177 4.177 24 C -0.359 4.359 25 S 0.626 5.374 26 C -0.364 4.364 27 C -0.275 4.275 28 S 0.332 5.668 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.252 0.748 35 H 0.166 0.834 36 H 0.212 0.788 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 33.762 -8.443 -17.743 39.064 hybrid contribution -0.772 1.697 1.485 2.383 sum 32.991 -6.746 -16.258 37.393 Atomic orbital electron populations 1.69891 1.06926 1.27210 1.56613 1.25635 0.95946 1.00685 1.01109 0.85959 0.77982 0.80345 0.78183 1.19871 1.23595 1.19023 1.18603 0.82825 0.94030 1.39752 0.91403 1.45646 1.05596 1.21050 1.62758 1.21314 0.89591 0.92697 0.93844 1.24240 0.97880 0.95392 1.00154 0.83919 1.24203 0.96930 0.98697 1.00102 0.85111 1.21649 0.92966 0.92312 0.93185 1.21524 0.82106 1.01378 0.93910 0.86043 1.44978 1.07041 1.51895 1.28527 1.16949 0.81632 0.78983 0.83605 1.90838 1.81796 1.38979 1.32631 1.23431 0.97484 1.10288 1.02737 1.21390 0.90863 0.96124 0.96689 1.20491 0.94230 1.05322 0.97630 1.26174 0.98067 1.06656 1.05007 1.82565 1.04047 1.37011 1.13776 1.25216 0.97813 1.09485 1.03896 1.23091 0.98313 1.05596 1.00539 1.83973 1.05458 1.55938 1.21478 0.92810 0.91279 0.94224 0.92664 0.94766 0.74828 0.83383 0.78822 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.26 13.97 21.65 0.30 -60.95 16 2 C -0.04 -2.38 5.49 84.86 0.47 -1.91 16 3 Si 0.95 48.18 24.49 68.60 1.68 49.86 16 4 H -0.27 -13.10 6.35 99.48 0.63 -12.47 16 5 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 6 H -0.27 -13.12 6.33 99.48 0.63 -12.49 16 7 C -0.22 -12.99 10.78 84.03 0.91 -12.08 16 8 H 0.07 4.21 8.06 -2.91 -0.02 4.19 16 9 N -0.63 -30.30 3.19 -688.18 -2.20 -32.50 16 10 C 0.15 5.75 7.04 86.53 0.61 6.36 16 11 C -0.16 -4.73 7.05 -9.89 -0.07 -4.80 16 12 H 0.14 3.52 8.14 -2.38 -0.02 3.50 16 13 C -0.18 -5.94 7.06 -9.89 -0.07 -6.01 16 14 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 15 C 0.12 5.38 4.49 86.53 0.39 5.77 16 16 C 0.12 3.50 5.98 44.99 0.27 3.77 16 17 H 0.12 4.11 7.40 -2.39 -0.02 4.10 16 18 N -0.68 -16.97 5.56 -446.47 -2.48 -19.46 16 19 C 0.60 16.93 7.79 86.45 0.67 17.60 16 20 O -0.56 -19.87 16.42 -4.34 -0.07 -19.94 16 21 C -0.22 -5.13 6.51 23.60 0.15 -4.97 16 22 C -0.02 -0.34 10.01 23.51 0.24 -0.11 16 23 C -0.16 -2.74 6.54 -19.17 -0.13 -2.86 16 24 C -0.22 -2.21 11.02 67.95 0.75 -1.46 16 25 S 0.36 1.82 22.97 -56.49 -1.30 0.52 16 26 C -0.22 -2.17 11.15 66.91 0.75 -1.42 16 27 C -0.15 -2.48 7.19 23.22 0.17 -2.32 16 28 S 0.08 1.41 22.20 -56.49 -1.25 0.16 16 29 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 2.58 5.06 -2.39 -0.01 2.56 16 33 H 0.03 1.52 6.79 -2.38 -0.02 1.50 16 34 H 0.41 8.25 8.07 -92.71 -0.75 7.51 16 35 H 0.15 3.05 8.02 -2.91 -0.02 3.03 16 36 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -75.41 337.07 0.01 -75.40 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.23 Total: 11.35 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.10 Total: -4.44 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -4.38 Total: -112.91 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.07 Total: -19.94 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.68 Total: 49.86 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.55 Total: 0.68 kcal Total: -75.41 0.01 -75.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961224178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.149 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds