Wall clock time and date at job start Tue Mar 31 2020 18:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47167 * 269.99978 * 3 2 1 5 5 H 1.48505 * 109.46974 * 30.00311 * 3 2 1 6 6 H 1.48498 * 109.47081 * 149.99795 * 3 2 1 7 7 C 1.38806 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 180.02562 * 7 2 1 9 9 N 1.36946 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.47864 * 126.94118 * 359.97438 * 9 7 2 11 11 C 1.56020 * 105.10055 * 182.02309 * 10 9 7 12 12 H 1.09001 * 116.24952 * 159.67841 * 11 10 9 13 13 C 1.57086 * 99.60750 * 32.80815 * 11 10 9 14 14 C 1.49283 * 126.94268 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.15877 * 16.68099 * 14 9 7 16 16 C 1.56003 * 104.30040 * 246.59779 * 14 9 7 17 17 N 1.47867 * 105.11554 * 289.08935 * 16 14 9 18 18 C 1.34775 * 126.94560 * 181.90641 * 17 16 14 19 19 O 1.21730 * 120.00159 * 179.68071 * 18 17 16 20 20 C 1.46401 * 119.99933 * 359.68186 * 18 17 16 21 21 C 1.35251 * 124.95985 * 180.55141 * 20 18 17 22 22 C 1.39891 * 115.35336 * 180.12834 * 21 20 18 23 23 S 1.77320 * 137.31566 * 179.27629 * 22 21 20 24 24 C 1.75302 * 91.42608 * 179.97438 * 23 22 21 25 25 C 1.32212 * 110.47173 * 359.97438 * 24 23 22 26 26 C 1.37483 * 113.46161 * 359.50396 * 22 21 20 27 27 S 1.75325 * 124.95927 * 359.97438 * 20 18 17 28 28 H 0.96999 * 119.99564 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.31827 * 63.11557 * 10 9 7 30 30 H 1.08999 * 110.40448 * 300.97381 * 10 9 7 31 31 H 1.08994 * 112.36861 * 64.27154 * 13 11 10 32 32 H 1.09000 * 112.36809 * 191.71787 * 13 11 10 33 33 H 1.08998 * 110.40807 * 170.12534 * 16 14 9 34 34 H 1.09006 * 110.20867 * 47.94628 * 16 14 9 35 35 H 1.07997 * 122.32021 * 359.38315 * 21 20 18 36 36 H 1.08001 * 124.76502 * 180.02562 * 24 23 22 37 37 H 1.08002 * 122.07424 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5668 0.0005 11 6 -0.3637 -4.1103 0.0532 12 1 -1.3408 -4.4455 0.4011 13 6 0.8847 -4.5252 0.9116 14 6 1.9102 -3.7617 -0.0005 15 1 2.9608 -3.8368 0.2803 16 6 1.5087 -4.3514 -1.3879 17 7 0.0510 -4.5837 -1.3008 18 6 -0.7419 -5.1199 -2.2496 19 8 -1.9329 -5.2593 -2.0401 20 6 -0.1708 -5.5349 -3.5322 21 6 -0.8730 -6.0726 -4.5554 22 6 -0.1229 -6.3991 -5.6902 23 16 -0.4175 -7.1132 -7.2863 24 6 1.2767 -6.9682 -7.7124 25 6 1.9592 -6.4279 -6.7172 26 6 1.2136 -6.1015 -5.5672 27 16 1.5207 -5.3940 -3.9713 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5745 -2.1533 -0.9107 30 1 -0.5823 -2.0912 0.8770 31 1 0.8465 -4.1191 1.9224 32 1 1.0499 -5.6026 0.9097 33 1 2.0316 -5.2907 -1.5673 34 1 1.7313 -3.6361 -2.1798 35 1 -1.9367 -6.2493 -4.4959 36 1 1.7030 -7.2761 -8.6557 37 1 3.0230 -6.2527 -6.7800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032477909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:17 Heat of formation + Delta-G solvation = 87.536766 kcal Electronic energy + Delta-G solvation = -23721.788167 eV Core-core repulsion = 20298.395776 eV Total energy + Delta-G solvation = -3423.392391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.20311 -38.86532 -37.73355 -34.47317 -33.73127 -31.71146 -29.50618 -28.70699 -28.18785 -25.45247 -25.06164 -23.63767 -22.42739 -21.37954 -20.05800 -19.56747 -18.34971 -18.13115 -17.00364 -16.44368 -16.13624 -15.83421 -15.27403 -14.70003 -14.55611 -14.04559 -13.96035 -13.62549 -13.42252 -13.22181 -13.15313 -12.35678 -12.08366 -11.98032 -11.78091 -11.43637 -11.28896 -11.26278 -11.09374 -11.00316 -10.90954 -10.68537 -10.58413 -10.26778 -10.12611 -9.77995 -9.69347 -9.44866 -8.76325 -8.59871 -8.16706 -7.71445 -6.99604 -5.81678 -3.16850 0.09404 0.98403 1.55785 1.63710 1.73326 2.11520 2.35757 3.20018 3.34982 3.39550 3.41485 3.42426 4.37301 4.56231 4.71667 4.81606 5.01190 5.07131 5.25633 5.28744 5.47643 5.49110 5.53487 5.68574 5.70278 5.76345 5.77174 5.87875 6.04151 6.06438 6.19339 6.31468 6.38407 6.49976 6.58579 7.36243 7.41784 7.66829 7.89206 8.04175 8.37909 9.04654 9.65664 10.33407 11.30355 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003436 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.309725 B = 8147.561768 C = 8816.996473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.595 5.595 10 C 0.173 3.827 11 C 0.101 3.899 12 H 0.118 0.882 13 C -0.151 4.151 14 C 0.148 3.852 15 H 0.111 0.889 16 C 0.068 3.932 17 N -0.599 5.599 18 C 0.599 3.401 19 O -0.541 6.541 20 C -0.215 4.215 21 C -0.029 4.029 22 C -0.173 4.173 23 S 0.132 5.868 24 C -0.195 4.195 25 C -0.092 4.092 26 C -0.183 4.183 27 S 0.216 5.784 28 H 0.255 0.745 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.172 0.828 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -15.306 -10.595 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.319 5.319 10 C 0.047 3.953 11 C -0.001 4.001 12 H 0.136 0.864 13 C -0.191 4.191 14 C 0.038 3.962 15 H 0.129 0.871 16 C -0.059 4.059 17 N -0.331 5.331 18 C 0.387 3.613 19 O -0.421 6.421 20 C -0.338 4.338 21 C -0.065 4.065 22 C -0.299 4.299 23 S 0.393 5.607 24 C -0.333 4.333 25 C -0.124 4.124 26 C -0.309 4.309 27 S 0.483 5.517 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.456 -15.094 -10.550 18.737 hybrid contribution 0.429 0.970 -0.342 1.114 sum 3.886 -14.124 -10.893 18.255 Atomic orbital electron populations 1.69913 1.04983 1.25449 1.56070 1.24830 0.95685 0.97783 1.01782 0.86109 0.78583 0.83355 0.77607 1.21557 1.21641 1.20570 1.19045 0.90438 0.81953 1.44828 0.90027 1.45259 1.01339 0.99265 1.86056 1.21963 0.84728 0.86964 1.01598 1.24438 0.98075 0.97812 0.79815 0.86441 1.24182 0.96451 0.99097 0.99349 1.23113 0.96848 0.86296 0.89904 0.87137 1.23511 0.79964 0.99448 1.03019 1.49071 1.09272 1.59188 1.15611 1.16398 0.85493 0.77875 0.81550 1.90812 1.14272 1.57255 1.79771 1.24031 0.97985 1.11819 0.99962 1.19706 1.00962 0.96971 0.88843 1.22647 0.95890 1.10893 1.00434 1.84121 1.06919 1.63091 1.06551 1.25249 0.96990 1.07382 1.03651 1.19374 1.00936 1.01419 0.90713 1.23819 0.96162 1.08747 1.02180 1.84666 1.04618 1.59440 1.03013 0.93490 0.93320 0.92252 0.89379 0.91434 0.92072 0.90171 0.82976 0.81043 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.56 55.49 0.59 -25.77 16 2 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.23 -6.09 10.37 -15.06 -0.16 -6.25 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -13.93 3.03 -156.37 -0.47 -14.40 16 10 C 0.17 4.06 4.77 -1.68 -0.01 4.05 16 11 C 0.10 1.91 5.25 -62.54 -0.33 1.58 16 12 H 0.12 2.15 8.05 -51.93 -0.42 1.74 16 13 C -0.15 -2.46 6.80 -22.31 -0.15 -2.61 16 14 C 0.15 2.64 5.52 -62.58 -0.35 2.30 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.07 1.14 4.55 -1.69 -0.01 1.13 16 17 N -0.60 -11.18 2.95 -158.39 -0.47 -11.65 16 18 C 0.60 11.53 7.85 -12.98 -0.10 11.43 16 19 O -0.54 -11.77 17.11 5.16 0.09 -11.68 16 20 C -0.22 -3.54 6.31 -37.36 -0.24 -3.78 16 21 C -0.03 -0.44 9.89 -40.03 -0.40 -0.84 16 22 C -0.17 -2.33 6.91 -39.24 -0.27 -2.60 16 23 S 0.13 1.37 23.34 -107.50 -2.51 -1.14 16 24 C -0.19 -1.73 11.10 28.81 0.32 -1.41 16 25 C -0.09 -0.95 10.17 -40.51 -0.41 -1.36 16 26 C -0.18 -2.38 6.95 -38.86 -0.27 -2.65 16 27 S 0.22 2.99 18.79 -107.50 -2.02 0.97 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.05 1.33 7.68 -51.93 -0.40 0.93 16 30 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 31 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.86 6.90 -51.93 -0.36 0.50 16 34 H 0.08 1.49 7.15 -51.93 -0.37 1.12 16 35 H 0.15 2.20 7.99 -52.49 -0.42 1.78 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -31.29 330.48 -11.31 -42.60 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.01 Total: 0.94 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.46 Total: -1.19 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.35 Total: -51.82 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -4.53 Total: -0.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.29 -11.31 -42.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032477909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.141 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds