Wall clock time and date at job start Tue Mar 31 2020 18:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47167 * 269.99978 * 3 2 1 5 5 H 1.48505 * 109.46974 * 30.00311 * 3 2 1 6 6 H 1.48498 * 109.47081 * 149.99795 * 3 2 1 7 7 C 1.38806 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 180.02562 * 7 2 1 9 9 N 1.36946 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.47864 * 126.94118 * 359.97438 * 9 7 2 11 11 C 1.56020 * 105.10055 * 182.02309 * 10 9 7 12 12 H 1.09001 * 116.24952 * 159.67841 * 11 10 9 13 13 C 1.57086 * 99.60750 * 32.80815 * 11 10 9 14 14 C 1.49283 * 126.94268 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.15877 * 16.68099 * 14 9 7 16 16 C 1.56003 * 104.30040 * 246.59779 * 14 9 7 17 17 N 1.47867 * 105.11554 * 289.08935 * 16 14 9 18 18 C 1.34775 * 126.94560 * 181.90641 * 17 16 14 19 19 O 1.21730 * 120.00159 * 179.68071 * 18 17 16 20 20 C 1.46401 * 119.99933 * 359.68186 * 18 17 16 21 21 C 1.35251 * 124.95985 * 180.55141 * 20 18 17 22 22 C 1.39891 * 115.35336 * 180.12834 * 21 20 18 23 23 S 1.77320 * 137.31566 * 179.27629 * 22 21 20 24 24 C 1.75302 * 91.42608 * 179.97438 * 23 22 21 25 25 C 1.32212 * 110.47173 * 359.97438 * 24 23 22 26 26 C 1.37483 * 113.46161 * 359.50396 * 22 21 20 27 27 S 1.75325 * 124.95927 * 359.97438 * 20 18 17 28 28 H 0.96999 * 119.99564 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.31827 * 63.11557 * 10 9 7 30 30 H 1.08999 * 110.40448 * 300.97381 * 10 9 7 31 31 H 1.08994 * 112.36861 * 64.27154 * 13 11 10 32 32 H 1.09000 * 112.36809 * 191.71787 * 13 11 10 33 33 H 1.08998 * 110.40807 * 170.12534 * 16 14 9 34 34 H 1.09006 * 110.20867 * 47.94628 * 16 14 9 35 35 H 1.07997 * 122.32021 * 359.38315 * 21 20 18 36 36 H 1.08001 * 124.76502 * 180.02562 * 24 23 22 37 37 H 1.08002 * 122.07424 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5668 0.0005 11 6 -0.3637 -4.1103 0.0532 12 1 -1.3408 -4.4455 0.4011 13 6 0.8847 -4.5252 0.9116 14 6 1.9102 -3.7617 -0.0005 15 1 2.9608 -3.8368 0.2803 16 6 1.5087 -4.3514 -1.3879 17 7 0.0510 -4.5837 -1.3008 18 6 -0.7419 -5.1199 -2.2496 19 8 -1.9329 -5.2593 -2.0401 20 6 -0.1708 -5.5349 -3.5322 21 6 -0.8730 -6.0726 -4.5554 22 6 -0.1229 -6.3991 -5.6902 23 16 -0.4175 -7.1132 -7.2863 24 6 1.2767 -6.9682 -7.7124 25 6 1.9592 -6.4279 -6.7172 26 6 1.2136 -6.1015 -5.5672 27 16 1.5207 -5.3940 -3.9713 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5745 -2.1533 -0.9107 30 1 -0.5823 -2.0912 0.8770 31 1 0.8465 -4.1191 1.9224 32 1 1.0499 -5.6026 0.9097 33 1 2.0316 -5.2907 -1.5673 34 1 1.7313 -3.6361 -2.1798 35 1 -1.9367 -6.2493 -4.4959 36 1 1.7030 -7.2761 -8.6557 37 1 3.0230 -6.2527 -6.7800 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032477909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:16 Heat of formation + Delta-G solvation = 69.238123 kcal Electronic energy + Delta-G solvation = -23722.581656 eV Core-core repulsion = 20298.395776 eV Total energy + Delta-G solvation = -3424.185880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 334.055 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72144 -40.01899 -39.08322 -35.56044 -35.46608 -33.43791 -31.09286 -30.35409 -29.35645 -27.05531 -26.34062 -25.15138 -23.66509 -22.49172 -21.55718 -21.05727 -19.77023 -19.28050 -18.56577 -17.73068 -17.43973 -17.20818 -16.71440 -16.38567 -15.75858 -15.44621 -15.16718 -15.11439 -14.70659 -14.46810 -14.23197 -13.84698 -13.61559 -13.43346 -13.15612 -13.01572 -12.89771 -12.71994 -12.46673 -12.30394 -12.21594 -12.18099 -12.04055 -11.93604 -11.61956 -11.52776 -11.28734 -10.75192 -10.41265 -9.79260 -9.49539 -8.94324 -8.67051 -7.84997 -5.21330 -0.94493 0.02294 0.48979 0.67872 0.79508 1.13635 1.44888 1.47867 1.49052 1.57754 1.77871 2.01690 2.48328 3.25331 3.33435 3.44881 3.72111 3.79158 3.84959 3.92433 3.97521 4.16395 4.31666 4.40542 4.52674 4.59400 4.64981 4.75650 4.82671 4.88167 4.98779 5.03894 5.08696 5.17384 5.19357 5.43265 5.48438 5.64639 6.08073 6.42813 6.89820 7.01685 7.69738 8.39324 9.26275 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003436 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.309725 B = 8147.561768 C = 8816.996473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.302 1.302 6 H -0.260 1.260 7 C -0.230 4.230 8 H 0.099 0.901 9 N -0.615 5.615 10 C 0.186 3.814 11 C 0.102 3.898 12 H 0.119 0.881 13 C -0.128 4.128 14 C 0.144 3.856 15 H 0.144 0.856 16 C 0.075 3.925 17 N -0.603 5.603 18 C 0.595 3.405 19 O -0.581 6.581 20 C -0.257 4.257 21 C -0.020 4.020 22 C -0.211 4.211 23 S 0.157 5.843 24 C -0.165 4.165 25 C -0.113 4.113 26 C -0.173 4.173 27 S 0.230 5.770 28 H 0.244 0.756 29 H -0.005 1.005 30 H 0.024 0.976 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.147 0.853 36 H 0.213 0.787 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 -17.655 -12.481 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.219 1.219 5 H -0.229 1.229 6 H -0.184 1.184 7 C -0.359 4.359 8 H 0.117 0.883 9 N -0.339 5.339 10 C 0.060 3.940 11 C -0.001 4.001 12 H 0.137 0.863 13 C -0.167 4.167 14 C 0.037 3.963 15 H 0.162 0.838 16 C -0.050 4.050 17 N -0.335 5.335 18 C 0.384 3.616 19 O -0.464 6.464 20 C -0.379 4.379 21 C -0.056 4.056 22 C -0.335 4.335 23 S 0.418 5.582 24 C -0.304 4.304 25 C -0.145 4.145 26 C -0.301 4.301 27 S 0.496 5.504 28 H 0.053 0.947 29 H 0.013 0.987 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.230 0.770 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.694 -17.486 -12.422 22.469 hybrid contribution -0.547 1.569 0.014 1.662 sum 6.147 -15.916 -12.408 21.097 Atomic orbital electron populations 1.70161 1.06663 1.25170 1.58640 1.25667 0.96365 1.01221 1.03002 0.85094 0.77925 0.79242 0.77171 1.21883 1.22933 1.18418 1.19556 0.91364 0.82913 1.42063 0.88339 1.45501 1.01387 1.01067 1.85923 1.21537 0.85103 0.89912 0.97415 1.24310 0.99902 0.94442 0.81404 0.86275 1.24096 0.93226 1.01015 0.98334 1.23556 0.98760 0.83259 0.90756 0.83827 1.23410 0.79128 1.00780 1.01728 1.49120 1.10100 1.58923 1.15337 1.16816 0.85100 0.77254 0.82381 1.90766 1.15883 1.59029 1.80708 1.23755 1.00045 1.14781 0.99293 1.19819 1.00905 0.95619 0.89286 1.22814 0.96161 1.12814 1.01746 1.84124 1.08219 1.61781 1.04083 1.25821 0.95745 1.04342 1.04457 1.19666 1.02369 1.02559 0.89956 1.24151 0.96411 1.07281 1.02281 1.84319 1.02324 1.59735 1.03988 0.94730 0.98664 0.95740 0.89236 0.87733 0.88279 0.91973 0.83553 0.76982 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.16 10.56 21.65 0.23 -57.94 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 44.84 29.55 68.60 2.03 46.87 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.23 -11.99 10.37 84.03 0.87 -11.12 16 8 H 0.10 4.68 7.83 -2.91 -0.02 4.66 16 9 N -0.61 -29.07 3.03 -648.65 -1.96 -31.03 16 10 C 0.19 9.29 4.77 87.16 0.42 9.70 16 11 C 0.10 3.97 5.25 46.93 0.25 4.22 16 12 H 0.12 4.56 8.05 -2.39 -0.02 4.54 16 13 C -0.13 -3.90 6.80 33.46 0.23 -3.67 16 14 C 0.14 4.85 5.52 46.92 0.26 5.11 16 15 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 16 C 0.08 2.45 4.55 87.16 0.40 2.84 16 17 N -0.60 -22.82 2.95 -773.22 -2.28 -25.09 16 18 C 0.59 23.71 7.85 86.37 0.68 24.39 16 19 O -0.58 -26.66 17.11 -4.45 -0.08 -26.74 16 20 C -0.26 -8.59 6.31 23.71 0.15 -8.44 16 21 C -0.02 -0.61 9.89 21.98 0.22 -0.39 16 22 C -0.21 -5.42 6.91 22.49 0.16 -5.26 16 23 S 0.16 2.80 23.34 -56.49 -1.32 1.48 16 24 C -0.17 -2.16 11.10 66.79 0.74 -1.42 16 25 C -0.11 -1.89 10.17 21.89 0.22 -1.67 16 26 C -0.17 -4.12 6.95 22.74 0.16 -3.97 16 27 S 0.23 6.07 18.79 -56.49 -1.06 5.01 16 28 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.00 -0.29 7.68 -2.39 -0.02 -0.31 16 30 H 0.02 1.36 7.46 -2.39 -0.02 1.35 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.10 2.50 6.90 -2.39 -0.02 2.49 16 34 H 0.06 2.28 7.15 -2.38 -0.02 2.27 16 35 H 0.15 4.46 7.99 -2.91 -0.02 4.43 16 36 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -73.54 330.48 1.87 -71.67 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.11 Total: 8.88 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.20 Total: 6.90 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.01 Total: -114.06 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.08 Total: -26.74 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 8.87 SS G_CDS: -2.38 Total: 6.49 kcal Total: -73.54 1.87 -71.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032477909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.904 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds