Wall clock time and date at job start Tue Mar 31 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48492 * 109.47515 * 270.00212 * 3 2 1 5 5 H 1.48503 * 109.47017 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.47156 * 149.99778 * 3 2 1 7 7 C 1.37874 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46696 * 60.00090 * 9 7 2 11 11 N 1.46498 * 109.46859 * 179.97438 * 9 7 2 12 12 C 1.34783 * 119.99787 * 204.99672 * 11 9 7 13 13 O 1.21602 * 119.99697 * 0.02562 * 12 11 9 14 14 C 1.47428 * 119.99892 * 180.02562 * 12 11 9 15 15 C 1.39967 * 120.60815 * 354.10847 * 14 12 11 16 16 C 1.38338 * 118.36600 * 179.70974 * 15 14 12 17 17 N 1.48023 * 120.24585 * 180.28166 * 16 15 14 18 18 O 1.21804 * 119.99660 * 180.30250 * 17 16 15 19 19 O 1.21791 * 119.99998 * 0.30599 * 17 16 15 20 20 C 1.38376 * 119.50476 * 0.58300 * 16 15 14 21 21 N 1.31849 * 121.22051 * 359.67985 * 20 16 15 22 22 C 1.32431 * 121.77367 * 0.02562 * 21 20 16 23 23 N 1.38259 * 119.82619 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.46843 * 299.99922 * 9 7 2 25 25 F 1.39896 * 109.47118 * 60.00256 * 24 9 7 26 26 F 1.39897 * 109.47269 * 299.99939 * 24 9 7 27 27 F 1.39906 * 109.46745 * 179.97438 * 24 9 7 28 28 H 0.97001 * 119.99445 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00343 * 25.00556 * 11 9 7 30 30 H 1.08002 * 120.81846 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.39088 * 179.69709 * 20 16 15 32 32 H 0.96993 * 120.00477 * 185.60097 * 23 22 21 33 33 H 0.97009 * 119.99989 * 5.60222 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8920 11 7 2.2029 -3.6127 -0.0027 12 6 1.8367 -4.8119 -0.4970 13 8 0.7163 -4.9694 -0.9426 14 6 2.7946 -5.9327 -0.4975 15 6 4.1227 -5.7352 -0.1026 16 6 4.9804 -6.8205 -0.1149 17 7 6.3921 -6.6601 0.3006 18 8 7.1447 -7.6176 0.2827 19 8 6.8009 -5.5707 0.6604 20 6 4.5105 -8.0558 -0.5247 21 7 3.2568 -8.2205 -0.8984 22 6 2.3922 -7.2174 -0.9001 23 7 1.0869 -7.4354 -1.3005 24 6 0.3709 -2.5810 1.2471 25 9 -0.5382 -1.5177 1.2475 26 9 1.1747 -2.5077 2.3897 27 9 -0.3291 -3.7923 1.2457 28 1 -0.4849 0.8401 0.0004 29 1 3.0967 -3.4870 0.3525 30 1 4.4684 -4.7603 0.2084 31 1 5.1829 -8.9008 -0.5383 32 1 0.4731 -6.6887 -1.3807 33 1 0.7849 -8.3351 -1.5011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156053167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:38 Heat of formation + Delta-G solvation = -130.029588 kcal Electronic energy + Delta-G solvation = -29399.215991 eV Core-core repulsion = 24435.486389 eV Total energy + Delta-G solvation = -4963.729602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.54326 -46.20186 -45.79600 -42.24219 -40.99148 -38.99556 -36.55759 -35.80940 -34.69112 -33.44588 -32.62724 -30.87741 -28.51888 -26.24308 -25.15115 -24.73074 -23.12541 -21.90597 -20.60144 -19.60092 -18.91521 -18.14775 -17.75283 -17.55504 -17.52887 -17.05726 -16.85538 -16.72089 -15.89846 -15.62676 -15.16583 -15.03089 -14.78792 -14.13060 -13.90752 -13.76660 -13.30561 -13.11917 -12.72056 -12.59215 -12.44999 -12.16641 -11.99783 -11.66500 -11.59316 -11.52704 -11.35201 -11.14481 -11.05413 -10.95832 -10.59140 -10.53496 -10.47890 -9.87960 -9.75539 -8.93444 -8.74965 -8.50793 -6.39230 -4.64590 -0.19525 0.26811 1.26560 1.33255 2.65542 2.94416 3.10885 3.18056 3.20282 3.30557 3.41529 3.90708 4.04562 4.08609 4.20660 4.35853 4.39411 4.77869 4.93179 5.04646 5.21170 5.54137 5.62766 5.66069 5.97245 6.29946 6.55271 6.66098 6.82261 6.88621 7.21753 7.46588 7.61072 7.63820 7.87393 8.25567 8.43337 9.04503 10.52288 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.004174 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.257490 B = 6706.248377 C = 7975.558577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.244 3.756 10 H 0.090 0.910 11 N -0.695 5.695 12 C 0.570 3.430 13 O -0.537 6.537 14 C -0.249 4.249 15 C 0.065 3.935 16 C -0.177 4.177 17 N 0.049 4.951 18 O -0.173 6.173 19 O -0.167 6.167 20 C 0.255 3.745 21 N -0.537 5.537 22 C 0.490 3.510 23 N -0.795 5.795 24 C 0.417 3.583 25 F -0.134 7.134 26 F -0.207 7.207 27 F -0.219 7.219 28 H 0.270 0.730 29 H 0.401 0.599 30 H 0.167 0.833 31 H 0.188 0.812 32 H 0.434 0.566 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 -11.928 -1.587 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.139 3.861 10 H 0.108 0.892 11 N -0.343 5.343 12 C 0.356 3.644 13 O -0.416 6.416 14 C -0.261 4.261 15 C 0.039 3.961 16 C -0.268 4.268 17 N 0.565 4.435 18 O -0.385 6.385 19 O -0.381 6.381 20 C 0.089 3.911 21 N -0.257 5.257 22 C 0.245 3.755 23 N -0.344 5.344 24 C 0.361 3.639 25 F -0.115 7.115 26 F -0.189 7.189 27 F -0.201 7.201 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.185 0.815 31 H 0.204 0.796 32 H 0.282 0.718 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.282 -12.631 -2.357 13.050 hybrid contribution 0.967 1.604 0.775 2.027 sum 3.250 -11.027 -1.581 11.604 Atomic orbital electron populations 1.70379 1.05919 1.27685 1.43112 1.25073 0.95189 1.00262 0.93740 0.86168 0.79693 0.81311 0.78510 1.20085 1.20694 1.19289 1.20861 0.93921 0.87826 1.56712 0.90163 1.19889 0.88544 0.85469 0.92171 0.89207 1.45977 1.17601 1.10205 1.60469 1.17583 0.86187 0.82333 0.78292 1.90411 1.20974 1.81724 1.48536 1.20293 0.95001 0.95442 1.15395 1.21438 0.90252 0.98949 0.85498 1.21661 0.84076 0.98725 1.22371 1.43216 1.02340 1.00338 0.97644 1.94516 1.53274 1.31916 1.58812 1.94572 1.79988 1.13700 1.49792 1.22610 0.90881 0.94564 0.83078 1.67787 1.02351 1.31402 1.24134 1.18613 0.86711 0.87356 0.82820 1.43636 1.08216 1.15511 1.67045 1.23112 0.80888 0.72885 0.87051 1.93421 1.68262 1.53627 1.96174 1.93007 1.74354 1.96166 1.55365 1.93065 1.81509 1.48529 1.96978 0.91912 0.76297 0.81524 0.79566 0.71791 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.69 9.50 55.43 0.53 -21.16 16 2 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 3 Si 0.92 19.20 29.54 -169.99 -5.02 14.18 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.56 -13.21 8.46 -34.44 -0.29 -13.50 16 8 H 0.08 1.80 7.74 -52.49 -0.41 1.39 16 9 C 0.24 5.52 2.21 -69.08 -0.15 5.36 16 10 H 0.09 2.24 7.58 -51.93 -0.39 1.84 16 11 N -0.69 -12.62 4.94 -56.01 -0.28 -12.90 16 12 C 0.57 9.69 7.29 -12.52 -0.09 9.60 16 13 O -0.54 -10.12 12.25 5.28 0.06 -10.05 16 14 C -0.25 -3.41 5.91 -104.65 -0.62 -4.03 16 15 C 0.06 0.80 9.12 -38.90 -0.35 0.44 16 16 C -0.18 -2.11 6.87 -79.86 -0.55 -2.66 16 17 N 0.05 0.65 4.45 34.01 0.15 0.81 16 18 O -0.17 -2.30 18.46 -29.46 -0.54 -2.85 16 19 O -0.17 -2.44 18.50 -29.46 -0.55 -2.99 16 20 C 0.26 2.62 10.70 -17.49 -0.19 2.43 16 21 N -0.54 -6.02 10.38 -12.20 -0.13 -6.15 16 22 C 0.49 6.10 7.76 -155.19 -1.20 4.90 16 23 N -0.80 -8.81 8.93 31.26 0.28 -8.53 16 24 C 0.42 9.89 2.81 37.15 0.10 9.99 16 25 F -0.13 -3.48 12.91 2.25 0.03 -3.45 16 26 F -0.21 -4.80 16.94 2.25 0.04 -4.76 16 27 F -0.22 -5.04 15.68 2.25 0.04 -5.01 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.40 6.32 6.67 -40.82 -0.27 6.05 16 30 H 0.17 1.87 6.18 -52.49 -0.32 1.55 16 31 H 0.19 1.39 7.60 -52.49 -0.40 0.99 16 32 H 0.43 5.60 5.33 -40.92 -0.22 5.38 16 33 H 0.41 3.32 8.95 -40.82 -0.37 2.95 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -27.95 308.47 -5.69 -33.64 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -1.51 Total: 10.49 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -3.44 Total: 14.08 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.55 Total: -47.93 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.02 Total: -15.89 kcal Atomic # 9 Polarization: -13.32 SS G_CDS: 0.10 Total: -13.22 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.95 -5.69 -33.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.393 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds