Wall clock time and date at job start Tue Mar 31 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48492 * 109.47515 * 270.00212 * 3 2 1 5 5 H 1.48503 * 109.47017 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.47156 * 149.99778 * 3 2 1 7 7 C 1.37874 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.46696 * 60.00090 * 9 7 2 11 11 N 1.46498 * 109.46859 * 179.97438 * 9 7 2 12 12 C 1.34783 * 119.99787 * 204.99672 * 11 9 7 13 13 O 1.21602 * 119.99697 * 0.02562 * 12 11 9 14 14 C 1.47428 * 119.99892 * 180.02562 * 12 11 9 15 15 C 1.39967 * 120.60815 * 354.10847 * 14 12 11 16 16 C 1.38338 * 118.36600 * 179.70974 * 15 14 12 17 17 N 1.48023 * 120.24585 * 180.28166 * 16 15 14 18 18 O 1.21804 * 119.99660 * 180.30250 * 17 16 15 19 19 O 1.21791 * 119.99998 * 0.30599 * 17 16 15 20 20 C 1.38376 * 119.50476 * 0.58300 * 16 15 14 21 21 N 1.31849 * 121.22051 * 359.67985 * 20 16 15 22 22 C 1.32431 * 121.77367 * 0.02562 * 21 20 16 23 23 N 1.38259 * 119.82619 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.46843 * 299.99922 * 9 7 2 25 25 F 1.39896 * 109.47118 * 60.00256 * 24 9 7 26 26 F 1.39897 * 109.47269 * 299.99939 * 24 9 7 27 27 F 1.39906 * 109.46745 * 179.97438 * 24 9 7 28 28 H 0.97001 * 119.99445 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00343 * 25.00556 * 11 9 7 30 30 H 1.08002 * 120.81846 * 359.97438 * 15 14 12 31 31 H 1.08001 * 119.39088 * 179.69709 * 20 16 15 32 32 H 0.96993 * 120.00477 * 185.60097 * 23 22 21 33 33 H 0.97009 * 119.99989 * 5.60222 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 1 0.6246 -2.5563 -0.8920 11 7 2.2029 -3.6127 -0.0027 12 6 1.8367 -4.8119 -0.4970 13 8 0.7163 -4.9694 -0.9426 14 6 2.7946 -5.9327 -0.4975 15 6 4.1227 -5.7352 -0.1026 16 6 4.9804 -6.8205 -0.1149 17 7 6.3921 -6.6601 0.3006 18 8 7.1447 -7.6176 0.2827 19 8 6.8009 -5.5707 0.6604 20 6 4.5105 -8.0558 -0.5247 21 7 3.2568 -8.2205 -0.8984 22 6 2.3922 -7.2174 -0.9001 23 7 1.0869 -7.4354 -1.3005 24 6 0.3709 -2.5810 1.2471 25 9 -0.5382 -1.5177 1.2475 26 9 1.1747 -2.5077 2.3897 27 9 -0.3291 -3.7923 1.2457 28 1 -0.4849 0.8401 0.0004 29 1 3.0967 -3.4870 0.3525 30 1 4.4684 -4.7603 0.2084 31 1 5.1829 -8.9008 -0.5383 32 1 0.4731 -6.6887 -1.3807 33 1 0.7849 -8.3351 -1.5011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156053167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:38 Heat of formation + Delta-G solvation = -148.038623 kcal Electronic energy + Delta-G solvation = -29399.996921 eV Core-core repulsion = 24435.486389 eV Total energy + Delta-G solvation = -4964.510532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.072 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.45406 -48.09102 -47.75956 -43.25317 -42.06321 -40.27714 -37.59728 -37.07780 -36.01709 -34.77225 -34.03696 -31.97117 -30.13637 -27.22815 -26.67244 -26.17368 -24.30810 -23.33578 -22.08714 -20.77944 -19.93999 -19.32357 -19.07823 -18.89979 -18.71682 -18.56337 -18.52331 -18.31289 -17.44776 -17.00343 -16.57744 -16.29468 -16.01300 -15.38806 -15.16507 -14.99052 -14.89236 -14.69973 -14.50758 -14.44269 -14.30525 -14.05674 -13.90080 -13.12079 -12.83477 -12.65406 -12.64377 -12.59485 -12.57520 -12.25151 -12.21061 -11.65730 -11.59932 -11.53081 -11.00502 -10.71703 -10.31349 -9.58062 -8.25286 -6.55654 -1.18350 -0.72695 0.25718 0.34156 1.44327 1.47336 1.49571 1.58356 1.83096 2.11833 2.29156 2.36312 2.49919 2.91230 2.99245 3.08282 3.16774 3.40637 3.70660 3.78679 3.88904 4.03817 4.15628 4.28742 4.64395 4.82977 5.12895 5.28040 5.44915 5.60353 5.78345 5.99237 6.38521 6.48838 6.56570 6.66450 7.01707 7.18039 8.66937 Molecular weight = 334.07amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.004174 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.257490 B = 6706.248377 C = 7975.558577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.021 3.979 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.253 3.747 10 H 0.062 0.938 11 N -0.695 5.695 12 C 0.569 3.431 13 O -0.560 6.560 14 C -0.265 4.265 15 C 0.075 3.925 16 C -0.182 4.182 17 N 0.052 4.948 18 O -0.156 6.156 19 O -0.206 6.206 20 C 0.273 3.727 21 N -0.532 5.532 22 C 0.489 3.511 23 N -0.787 5.787 24 C 0.413 3.587 25 F -0.149 7.149 26 F -0.204 7.204 27 F -0.217 7.217 28 H 0.269 0.731 29 H 0.413 0.587 30 H 0.173 0.827 31 H 0.221 0.779 32 H 0.429 0.571 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.966 -13.264 -1.756 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.186 4.186 3 Si 0.802 3.198 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.601 4.601 8 H 0.110 0.890 9 C 0.146 3.854 10 H 0.079 0.921 11 N -0.344 5.344 12 C 0.358 3.642 13 O -0.441 6.441 14 C -0.277 4.277 15 C 0.049 3.951 16 C -0.273 4.273 17 N 0.565 4.435 18 O -0.374 6.374 19 O -0.411 6.411 20 C 0.106 3.894 21 N -0.251 5.251 22 C 0.244 3.756 23 N -0.334 5.334 24 C 0.357 3.643 25 F -0.130 7.130 26 F -0.186 7.186 27 F -0.198 7.198 28 H 0.079 0.921 29 H 0.250 0.750 30 H 0.190 0.810 31 H 0.238 0.762 32 H 0.275 0.725 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.830 -13.937 -2.513 14.671 hybrid contribution 0.469 1.825 0.797 2.046 sum 4.299 -12.112 -1.716 12.967 Atomic orbital electron populations 1.70498 1.07302 1.28239 1.44376 1.25892 0.95846 1.03421 0.93397 0.85229 0.78600 0.77423 0.78580 1.19553 1.21087 1.18438 1.21207 0.94602 0.88278 1.55976 0.88980 1.19453 0.88723 0.86811 0.90380 0.92083 1.45784 1.17449 1.09811 1.61354 1.17999 0.86498 0.82505 0.77246 1.90409 1.22197 1.82204 1.49239 1.19902 0.94830 0.94757 1.18212 1.21482 0.89738 0.99588 0.84245 1.21681 0.83226 0.99228 1.23187 1.43346 1.02742 1.00094 0.97346 1.94495 1.53612 1.31646 1.57683 1.94589 1.80530 1.14144 1.51791 1.23174 0.90733 0.94788 0.80691 1.67947 1.02484 1.30333 1.24345 1.18710 0.87276 0.87189 0.82469 1.43592 1.07730 1.16136 1.65951 1.23284 0.80854 0.72543 0.87611 1.93388 1.68877 1.54481 1.96289 1.93000 1.74183 1.96153 1.55256 1.93060 1.81531 1.48253 1.97002 0.92074 0.74973 0.80953 0.76228 0.72547 0.74748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.74 9.50 21.45 0.20 -45.54 16 2 C 0.02 1.00 5.20 84.65 0.44 1.44 16 3 Si 0.98 39.02 29.54 68.60 2.03 41.04 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.29 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.56 -26.71 8.46 25.60 0.22 -26.49 16 8 H 0.09 4.04 7.74 -2.91 -0.02 4.01 16 9 C 0.25 11.57 2.21 44.25 0.10 11.67 16 10 H 0.06 3.15 7.58 -2.38 -0.02 3.14 16 11 N -0.69 -25.19 4.94 -449.36 -2.22 -27.41 16 12 C 0.57 19.22 7.29 86.66 0.63 19.85 16 13 O -0.56 -21.24 12.25 -4.04 -0.05 -21.29 16 14 C -0.27 -6.92 5.91 -19.88 -0.12 -7.04 16 15 C 0.08 1.74 9.12 22.71 0.21 1.95 16 16 C -0.18 -3.88 6.87 36.43 0.25 -3.63 16 17 N 0.05 1.27 4.45 -46.32 -0.21 1.07 16 18 O -0.16 -3.72 18.46 18.88 0.35 -3.37 16 19 O -0.21 -5.83 18.50 18.90 0.35 -5.48 16 20 C 0.27 4.67 10.70 84.72 0.91 5.58 16 21 N -0.53 -10.34 10.38 -192.52 -2.00 -12.34 16 22 C 0.49 11.25 7.76 133.65 1.04 12.29 16 23 N -0.79 -16.29 8.93 -55.00 -0.49 -16.78 16 24 C 0.41 19.84 2.81 71.98 0.20 20.05 16 25 F -0.15 -7.92 12.91 44.97 0.58 -7.34 16 26 F -0.20 -9.44 16.94 44.97 0.76 -8.68 16 27 F -0.22 -10.07 15.68 44.97 0.70 -9.37 16 28 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.41 12.79 6.67 -92.71 -0.62 12.17 16 30 H 0.17 3.69 6.18 -2.91 -0.02 3.67 16 31 H 0.22 2.25 7.60 -2.91 -0.02 2.23 16 32 H 0.43 10.77 5.33 -94.25 -0.50 10.26 16 33 H 0.42 6.08 8.95 -92.70 -0.83 5.25 16 Total: -1.00 -59.38 308.47 3.20 -56.18 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -0.68 Total: 23.66 kcal Atomic # 6 Polarization: 31.78 SS G_CDS: 3.87 Total: 35.65 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -4.71 Total: -101.00 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: 0.65 Total: -30.14 kcal Atomic # 9 Polarization: -27.44 SS G_CDS: 2.05 Total: -25.39 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Total: -59.38 3.20 -56.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156053167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.861 kcal (2) G-P(sol) polarization free energy of solvation -59.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds