Wall clock time and date at job start Tue Mar 31 2020 18:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 120.00381 * 2 1 4 4 H 1.48502 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46560 * 299.99484 * 3 2 1 6 6 H 1.48500 * 109.47326 * 59.99585 * 3 2 1 7 7 C 1.38653 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00566 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.35739 * 117.00172 * 185.05690 * 9 7 2 11 11 C 1.38944 * 120.04090 * 354.48094 * 10 9 7 12 12 C 1.38115 * 120.04004 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.12263 * 359.78940 * 12 11 10 14 14 C 1.38780 * 120.08296 * 0.46498 * 13 12 11 15 15 O 1.35897 * 120.02266 * 179.79037 * 14 13 12 16 16 S 1.52198 * 113.99806 * 269.72551 * 15 14 13 17 17 O 1.42105 * 104.27718 * 318.92466 * 16 15 14 18 18 O 1.42102 * 104.27641 * 191.06984 * 16 15 14 19 19 C 1.81393 * 104.45132 * 74.99877 * 16 15 14 20 20 C 1.50708 * 109.47254 * 179.97438 * 19 16 15 21 21 C 1.38233 * 119.99946 * 89.99817 * 20 19 16 22 22 C 1.38241 * 119.99781 * 179.97438 * 21 20 19 23 23 C 1.38232 * 119.99671 * 0.09105 * 22 21 20 24 24 C 1.38233 * 120.00486 * 359.86587 * 23 22 21 25 25 C 1.38234 * 120.00011 * 0.08621 * 24 23 22 26 26 C 1.38614 * 119.95603 * 359.51633 * 14 13 12 27 27 H 0.96999 * 119.99429 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97669 * 359.97438 * 11 10 9 29 29 H 1.07996 * 119.93467 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.95284 * 180.25387 * 13 12 11 31 31 H 1.09001 * 109.47713 * 59.99921 * 19 16 15 32 32 H 1.08999 * 109.47397 * 299.99644 * 19 16 15 33 33 H 1.07997 * 119.99974 * 359.69994 * 21 20 19 34 34 H 1.07993 * 120.00034 * 179.97438 * 22 21 20 35 35 H 1.08009 * 119.99480 * 179.97438 * 23 22 21 36 36 H 1.08002 * 119.99802 * 180.02562 * 24 23 22 37 37 H 1.07993 * 120.00214 * 179.97438 * 25 24 23 38 38 H 1.08001 * 120.06275 * 180.23189 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8910 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4576 -3.4388 0.0955 12 6 4.2055 -4.5947 0.2051 13 6 3.5761 -5.8190 0.3314 14 6 2.1902 -5.8911 0.3388 15 8 1.5727 -7.0957 0.4588 16 16 1.2852 -7.7791 -0.8704 17 8 0.8421 -6.7270 -1.7167 18 8 0.4249 -8.8579 -0.5309 19 6 2.8990 -8.4001 -1.4185 20 6 2.7429 -9.1060 -2.7408 21 6 2.8730 -8.3989 -3.9214 22 6 2.7304 -9.0466 -5.1343 23 6 2.4558 -10.4010 -5.1664 24 6 2.3267 -11.1083 -3.9858 25 6 2.4703 -10.4609 -2.7729 26 6 1.4362 -4.7331 0.2295 27 1 -0.4849 0.8401 -0.0004 28 1 3.9517 -2.4832 0.0003 29 1 5.2841 -4.5416 0.1958 30 1 4.1637 -6.7207 0.4210 31 1 3.2903 -9.0981 -0.6783 32 1 3.5904 -7.5650 -1.5315 33 1 3.0817 -7.3396 -3.8962 34 1 2.8316 -8.4941 -6.0567 35 1 2.3440 -10.9070 -6.1141 36 1 2.1126 -12.1666 -4.0110 37 1 2.3689 -11.0133 -1.8506 38 1 0.3576 -4.7869 0.2389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191247129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:44 Heat of formation + Delta-G solvation = -75.441040 kcal Electronic energy + Delta-G solvation = -25713.605463 eV Core-core repulsion = 21808.100202 eV Total energy + Delta-G solvation = -3905.505261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.075 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68061 -39.48954 -38.73152 -37.07480 -36.12436 -35.90807 -33.32063 -32.48663 -31.14980 -30.15202 -29.03986 -27.62662 -25.58671 -23.07705 -22.85024 -22.29105 -21.64223 -20.28813 -18.64986 -17.76045 -17.62943 -17.36206 -16.67208 -16.39872 -15.60238 -15.52706 -15.34766 -14.99041 -14.73102 -14.34657 -13.87650 -13.67372 -13.59698 -13.52463 -13.17673 -13.02891 -12.86666 -12.69481 -12.31967 -12.05174 -11.92438 -11.83938 -11.61799 -11.42956 -11.41015 -11.26677 -11.13292 -10.99248 -10.88747 -10.54863 -9.61339 -9.17656 -9.04623 -8.96315 -8.45320 -7.59199 -6.62285 -4.21541 0.04160 1.11027 1.15100 1.65887 1.95899 2.33880 3.03543 3.04570 3.11015 3.49320 3.70577 3.80804 4.02714 4.15249 4.18277 4.53934 4.76253 4.80630 4.88228 4.91516 5.00003 5.21340 5.21879 5.24986 5.34666 5.41923 5.56179 5.70737 5.77000 5.79364 5.97340 6.18065 6.24246 6.26276 6.32056 6.50751 6.63825 6.70971 6.74535 7.01582 7.15136 7.41536 7.79993 8.81157 9.45589 10.54369 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.002912 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.158171 B = 9612.045485 C = 9961.753030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.395 4.395 8 H 0.098 0.902 9 O -0.162 6.162 10 C 0.164 3.836 11 C -0.220 4.220 12 C -0.054 4.054 13 C -0.233 4.233 14 C 0.097 3.903 15 O -0.661 6.661 16 S 2.593 3.407 17 O -0.935 6.935 18 O -0.934 6.934 19 C -0.610 4.610 20 C -0.088 4.088 21 C -0.103 4.103 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.108 4.108 26 C -0.156 4.156 27 H 0.274 0.726 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.349 -16.318 -5.846 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.165 4.165 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.471 4.471 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.108 3.892 11 C -0.241 4.241 12 C -0.072 4.072 13 C -0.255 4.255 14 C 0.056 3.944 15 O -0.621 6.621 16 S 2.688 3.312 17 O -0.933 6.933 18 O -0.932 6.932 19 C -0.734 4.734 20 C -0.089 4.089 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.177 4.177 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.134 -16.053 -5.646 18.861 hybrid contribution 1.080 0.421 -0.015 1.159 sum 9.214 -15.633 -5.661 19.008 Atomic orbital electron populations 1.70055 1.06100 1.28131 1.44042 1.25392 0.95919 0.99103 0.96048 0.85573 0.79109 0.79856 0.78447 1.18905 1.19934 1.19958 1.21474 0.92028 0.80405 1.53180 0.88487 1.83992 1.34390 1.11410 1.76562 1.18924 0.90072 0.87580 0.92597 1.21366 0.93576 0.99576 1.09553 1.20574 0.99058 0.91047 0.96565 1.20638 0.91297 0.99235 1.14296 1.17541 0.90366 0.79356 1.07125 1.85647 1.79281 1.39369 1.57768 1.05721 0.76768 0.74998 0.73711 1.93690 1.78765 1.52603 1.68272 1.93598 1.61484 1.56562 1.81548 1.29936 1.26452 1.12291 1.04741 1.18928 1.03648 0.94216 0.92112 1.21280 0.98507 1.00629 0.91775 1.21211 0.99567 0.94800 0.97913 1.21279 0.99040 0.94529 0.98411 1.21164 1.00149 1.00238 0.92187 1.21193 0.98981 0.93532 0.98982 1.20171 1.00660 0.89245 1.07673 0.91630 0.84416 0.85749 0.85937 0.83823 0.83212 0.84801 0.85301 0.85651 0.85452 0.85197 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.01 13.67 55.48 0.76 -23.25 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.95 19.36 29.55 -169.99 -5.02 14.33 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.40 -10.41 9.49 30.89 0.29 -10.11 16 8 H 0.10 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.16 -4.43 9.76 0.06 0.00 -4.43 16 10 C 0.16 3.80 6.64 -39.13 -0.26 3.54 16 11 C -0.22 -4.31 9.17 -39.37 -0.36 -4.67 16 12 C -0.05 -0.85 10.03 -39.63 -0.40 -1.25 16 13 C -0.23 -3.63 8.46 -39.38 -0.33 -3.96 16 14 C 0.10 1.80 4.79 -39.24 -0.19 1.61 16 15 O -0.66 -11.34 10.05 -51.74 -0.52 -11.86 16 16 S 2.59 41.69 5.15 -107.50 -0.55 41.14 16 17 O -0.93 -18.03 16.26 -67.04 -1.09 -19.12 16 18 O -0.93 -16.77 18.09 -67.04 -1.21 -17.99 16 19 C -0.61 -6.96 5.60 36.01 0.20 -6.76 16 20 C -0.09 -1.05 5.14 -104.62 -0.54 -1.58 16 21 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 23 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 25 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 26 C -0.16 -3.38 8.99 -39.25 -0.35 -3.74 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.14 2.60 5.63 -52.49 -0.30 2.30 16 29 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 1.42 7.52 -52.48 -0.39 1.02 16 31 H 0.14 1.21 8.08 -51.92 -0.42 0.79 16 32 H 0.15 1.52 6.57 -51.92 -0.34 1.17 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -33.47 344.92 -10.25 -43.72 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -3.82 Total: 5.82 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -3.99 Total: -33.57 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.76 Total: -23.25 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -2.82 Total: -53.39 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 41.69 SS G_CDS: -0.55 Total: 41.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.47 -10.25 -43.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191247129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.720 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds