Wall clock time and date at job start Tue Mar 31 2020 18:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 120.00381 * 2 1 4 4 H 1.48502 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46560 * 299.99484 * 3 2 1 6 6 H 1.48500 * 109.47326 * 59.99585 * 3 2 1 7 7 C 1.38653 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00566 * 180.02562 * 7 2 1 9 9 O 1.34838 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.35739 * 117.00172 * 185.05690 * 9 7 2 11 11 C 1.38944 * 120.04090 * 354.48094 * 10 9 7 12 12 C 1.38115 * 120.04004 * 179.97438 * 11 10 9 13 13 C 1.38237 * 120.12263 * 359.78940 * 12 11 10 14 14 C 1.38780 * 120.08296 * 0.46498 * 13 12 11 15 15 O 1.35897 * 120.02266 * 179.79037 * 14 13 12 16 16 S 1.52198 * 113.99806 * 269.72551 * 15 14 13 17 17 O 1.42105 * 104.27718 * 318.92466 * 16 15 14 18 18 O 1.42102 * 104.27641 * 191.06984 * 16 15 14 19 19 C 1.81393 * 104.45132 * 74.99877 * 16 15 14 20 20 C 1.50708 * 109.47254 * 179.97438 * 19 16 15 21 21 C 1.38233 * 119.99946 * 89.99817 * 20 19 16 22 22 C 1.38241 * 119.99781 * 179.97438 * 21 20 19 23 23 C 1.38232 * 119.99671 * 0.09105 * 22 21 20 24 24 C 1.38233 * 120.00486 * 359.86587 * 23 22 21 25 25 C 1.38234 * 120.00011 * 0.08621 * 24 23 22 26 26 C 1.38614 * 119.95603 * 359.51633 * 14 13 12 27 27 H 0.96999 * 119.99429 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97669 * 359.97438 * 11 10 9 29 29 H 1.07996 * 119.93467 * 180.02562 * 12 11 10 30 30 H 1.08003 * 119.95284 * 180.25387 * 13 12 11 31 31 H 1.09001 * 109.47713 * 59.99921 * 19 16 15 32 32 H 1.08999 * 109.47397 * 299.99644 * 19 16 15 33 33 H 1.07997 * 119.99974 * 359.69994 * 21 20 19 34 34 H 1.07993 * 120.00034 * 179.97438 * 22 21 20 35 35 H 1.08009 * 119.99480 * 179.97438 * 23 22 21 36 36 H 1.08002 * 119.99802 * 180.02562 * 24 23 22 37 37 H 1.07993 * 120.00214 * 179.97438 * 25 24 23 38 38 H 1.08001 * 120.06275 * 180.23189 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8910 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4576 -3.4388 0.0955 12 6 4.2055 -4.5947 0.2051 13 6 3.5761 -5.8190 0.3314 14 6 2.1902 -5.8911 0.3388 15 8 1.5727 -7.0957 0.4588 16 16 1.2852 -7.7791 -0.8704 17 8 0.8421 -6.7270 -1.7167 18 8 0.4249 -8.8579 -0.5309 19 6 2.8990 -8.4001 -1.4185 20 6 2.7429 -9.1060 -2.7408 21 6 2.8730 -8.3989 -3.9214 22 6 2.7304 -9.0466 -5.1343 23 6 2.4558 -10.4010 -5.1664 24 6 2.3267 -11.1083 -3.9858 25 6 2.4703 -10.4609 -2.7729 26 6 1.4362 -4.7331 0.2295 27 1 -0.4849 0.8401 -0.0004 28 1 3.9517 -2.4832 0.0003 29 1 5.2841 -4.5416 0.1958 30 1 4.1637 -6.7207 0.4210 31 1 3.2903 -9.0981 -0.6783 32 1 3.5904 -7.5650 -1.5315 33 1 3.0817 -7.3396 -3.8962 34 1 2.8316 -8.4941 -6.0567 35 1 2.3440 -10.9070 -6.1141 36 1 2.1126 -12.1666 -4.0110 37 1 2.3689 -11.0133 -1.8506 38 1 0.3576 -4.7869 0.2389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191247129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:43 Heat of formation + Delta-G solvation = -98.071627 kcal Electronic energy + Delta-G solvation = -25714.586799 eV Core-core repulsion = 21808.100202 eV Total energy + Delta-G solvation = -3906.486597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.075 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11492 -40.41442 -40.22655 -38.44108 -37.69137 -37.29434 -34.36230 -34.14027 -31.88874 -31.69283 -30.57505 -28.52960 -27.44018 -24.57241 -23.65589 -23.59843 -22.66751 -21.72238 -20.13967 -19.28531 -19.10064 -18.55672 -17.92267 -17.57734 -17.04475 -16.63852 -16.47946 -16.14541 -16.04871 -15.84945 -15.64895 -15.14821 -14.61472 -14.38855 -14.36997 -14.10775 -13.92807 -13.87475 -13.76515 -13.49197 -13.41816 -13.32065 -13.01121 -12.99167 -12.56926 -12.43624 -12.37875 -12.07115 -12.02613 -11.98504 -11.36516 -10.87274 -9.99773 -9.93350 -9.73259 -9.25065 -8.50265 -6.20640 -1.20630 0.12763 0.36381 0.39656 0.45974 0.99591 1.37963 1.46214 1.57168 2.15729 2.46300 2.57758 2.79699 2.85739 3.04952 3.23529 3.32896 3.63544 3.83662 4.01396 4.06590 4.14184 4.16218 4.20461 4.23910 4.40018 4.51732 4.52560 4.61653 4.75484 4.96275 5.00130 5.07166 5.07897 5.15732 5.43394 5.44180 5.46253 5.52112 5.53441 5.92684 5.95361 5.98865 6.92805 7.68261 8.72826 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.002912 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.158171 B = 9612.045485 C = 9961.753030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.025 2.975 4 H -0.241 1.241 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.416 4.416 8 H 0.117 0.883 9 O -0.226 6.226 10 C 0.132 3.868 11 C -0.219 4.219 12 C -0.039 4.039 13 C -0.196 4.196 14 C 0.096 3.904 15 O -0.667 6.667 16 S 2.578 3.422 17 O -0.982 6.982 18 O -0.963 6.963 19 C -0.574 4.574 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.195 4.195 27 H 0.274 0.726 28 H 0.144 0.856 29 H 0.185 0.815 30 H 0.184 0.816 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.277 -19.116 -6.426 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.222 4.222 3 Si 0.843 3.157 4 H -0.163 1.163 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.135 0.865 9 O -0.132 6.132 10 C 0.080 3.920 11 C -0.239 4.239 12 C -0.056 4.056 13 C -0.216 4.216 14 C 0.055 3.945 15 O -0.626 6.626 16 S 2.680 3.320 17 O -0.980 6.980 18 O -0.961 6.961 19 C -0.703 4.703 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.217 4.217 27 H 0.083 0.917 28 H 0.161 0.839 29 H 0.202 0.798 30 H 0.201 0.799 31 H 0.203 0.797 32 H 0.189 0.811 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.043 -18.882 -6.186 23.768 hybrid contribution -0.281 0.740 0.070 0.794 sum 12.762 -18.142 -6.117 23.009 Atomic orbital electron populations 1.70223 1.08408 1.29026 1.48072 1.26753 0.96832 1.03159 0.95497 0.84447 0.78678 0.74236 0.78315 1.16343 1.19678 1.19658 1.22061 0.93065 0.80691 1.53281 0.86541 1.83976 1.36312 1.12711 1.80188 1.19430 0.91957 0.86894 0.93709 1.21658 0.91994 1.01747 1.08463 1.21239 1.01660 0.89191 0.93530 1.21422 0.89786 1.01685 1.08745 1.17753 0.91619 0.78752 1.06385 1.85605 1.79850 1.38614 1.58548 1.05969 0.78976 0.74155 0.72893 1.93646 1.81102 1.54413 1.68851 1.93551 1.64266 1.56543 1.81742 1.29621 1.21251 1.13737 1.05732 1.19066 1.05487 0.94949 0.92032 1.21497 0.99290 1.00859 0.92664 1.21538 0.99327 0.95635 0.98159 1.21695 0.97341 0.94234 0.99742 1.21577 0.99209 1.01707 0.91804 1.21537 0.98603 0.93378 1.00394 1.20260 0.99996 0.90874 1.10571 0.91715 0.83878 0.79792 0.79873 0.79704 0.81137 0.84998 0.83582 0.82847 0.82797 0.83692 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.67 21.61 0.30 -55.85 16 2 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 3 Si 1.02 40.91 29.55 68.60 2.03 42.94 16 4 H -0.24 -8.48 7.11 99.48 0.71 -7.77 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.42 -23.09 9.49 67.92 0.64 -22.44 16 8 H 0.12 5.62 5.20 -2.91 -0.02 5.60 16 9 O -0.23 -13.44 9.76 -22.70 -0.22 -13.67 16 10 C 0.13 6.41 6.64 22.57 0.15 6.56 16 11 C -0.22 -8.24 9.17 22.41 0.21 -8.03 16 12 C -0.04 -1.01 10.03 22.24 0.22 -0.79 16 13 C -0.20 -5.07 8.46 22.40 0.19 -4.88 16 14 C 0.10 3.45 4.79 22.49 0.11 3.56 16 15 O -0.67 -22.39 10.05 -61.48 -0.62 -23.01 16 16 S 2.58 81.61 5.15 -56.49 -0.29 81.32 16 17 O -0.98 -39.59 16.26 -118.57 -1.93 -41.51 16 18 O -0.96 -34.74 18.09 -118.57 -2.15 -36.88 16 19 C -0.57 -10.83 5.60 71.24 0.40 -10.43 16 20 C -0.11 -2.38 5.14 -19.86 -0.10 -2.49 16 21 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16 22 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.11 -1.66 10.05 22.27 0.22 -1.43 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 26 C -0.20 -9.01 8.99 22.49 0.20 -8.81 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.14 5.19 5.63 -2.91 -0.02 5.17 16 29 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.18 2.63 7.52 -2.91 -0.02 2.61 16 31 H 0.19 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.17 2.52 6.57 -2.39 -0.02 2.51 16 33 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.10 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -84.31 344.92 1.81 -82.51 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.10 Total: 22.40 kcal Atomic # 6 Polarization: -61.83 SS G_CDS: 3.59 Total: -58.24 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.30 Total: -55.85 kcal Atomic # 8 Polarization: -110.15 SS G_CDS: -4.91 Total: -115.07 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 81.61 SS G_CDS: -0.29 Total: 81.32 kcal Total: -84.31 1.81 -82.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191247129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.564 kcal (2) G-P(sol) polarization free energy of solvation -84.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds