Wall clock time and date at job start Tue Mar 31 2020 18:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48499 * 109.46861 * 269.99417 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99802 * 3 2 1 6 6 H 1.48502 * 109.46879 * 149.99866 * 3 2 1 7 7 C 1.37871 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99996 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.39788 * 66.46201 * 9 7 2 11 11 O 1.42095 * 106.40436 * 293.54026 * 9 7 2 12 12 N 1.65600 * 107.21541 * 179.97438 * 9 7 2 13 13 C 1.39967 * 120.00126 * 65.00752 * 12 9 7 14 14 C 1.38957 * 120.50924 * 35.26385 * 13 12 9 15 15 C 1.38759 * 118.42092 * 180.24671 * 14 13 12 16 16 C 1.38056 * 119.34702 * 359.75457 * 15 14 13 17 17 N 1.32011 * 120.97652 * 359.97421 * 16 15 14 18 18 C 1.32128 * 121.72239 * 0.02562 * 17 16 15 19 19 O 1.35776 * 119.72453 * 179.97438 * 18 17 16 20 20 C 1.42898 * 117.00243 * 359.97438 * 19 18 17 21 21 C 1.50703 * 109.47171 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99770 * 269.72826 * 21 20 19 23 23 C 1.38239 * 119.99901 * 179.76875 * 22 21 20 24 24 C 1.38240 * 119.99645 * 0.50240 * 23 22 21 25 25 C 1.38227 * 120.00205 * 359.74956 * 24 23 22 26 26 C 1.38232 * 119.99860 * 90.00268 * 21 20 19 27 27 H 0.97003 * 119.99913 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00252 * 244.99641 * 12 9 7 29 29 H 1.08007 * 120.78968 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.32487 * 179.73266 * 15 14 13 31 31 H 1.07997 * 119.50834 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.47259 * 300.00324 * 20 19 18 33 33 H 1.09001 * 109.47074 * 60.00346 * 20 19 18 34 34 H 1.08001 * 120.00330 * 359.97438 * 22 21 20 35 35 H 1.08001 * 119.99843 * 180.23314 * 23 22 21 36 36 H 1.08002 * 119.99612 * 179.72381 * 24 23 22 37 37 H 1.07996 * 120.00251 * 179.97438 * 25 24 23 38 38 H 1.07998 * 120.00407 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2484 -3.9353 0.0005 13 6 3.0996 -4.1011 1.0992 14 6 2.6455 -3.8486 2.3879 15 6 3.5276 -4.0220 3.4449 16 6 4.8175 -4.4415 3.1877 17 7 5.2213 -4.6795 1.9536 18 6 4.4155 -4.5276 0.9175 19 8 4.8736 -4.7834 -0.3348 20 6 6.2320 -5.2106 -0.4540 21 6 6.5595 -5.4441 -1.9064 22 6 6.3656 -6.6930 -2.4664 23 6 6.6615 -6.9060 -3.7999 24 6 7.1610 -5.8729 -4.5706 25 6 7.3598 -4.6254 -4.0092 26 6 7.0591 -4.4110 -2.6770 27 1 -0.4850 0.8401 -0.0004 28 1 2.3173 -4.5324 -0.7607 29 1 1.6310 -3.5217 2.5625 30 1 3.2084 -3.8304 4.4586 31 1 5.5062 -4.5777 4.0084 32 1 6.8915 -4.4412 -0.0524 33 1 6.3721 -6.1365 0.1038 34 1 5.9798 -7.5014 -1.8631 35 1 6.5064 -7.8808 -4.2383 36 1 7.3964 -6.0405 -5.6112 37 1 7.7505 -3.8184 -4.6112 38 1 7.2152 -3.4366 -2.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192944006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:44 Heat of formation + Delta-G solvation = -61.813505 kcal Electronic energy + Delta-G solvation = -25928.038955 eV Core-core repulsion = 22055.417379 eV Total energy + Delta-G solvation = -3872.621576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44615 -39.33019 -37.51749 -35.57856 -34.88557 -34.17384 -33.15645 -32.32362 -31.06121 -31.02174 -28.66908 -26.45635 -26.21035 -23.16198 -22.70482 -22.63878 -21.28547 -19.15617 -18.27533 -17.71438 -17.57923 -16.84989 -16.37325 -16.11399 -15.77764 -15.21539 -15.03569 -14.80560 -14.66013 -14.09835 -13.77133 -13.69850 -13.53818 -13.08227 -13.04792 -12.77233 -12.51368 -12.13936 -12.01251 -11.40283 -11.29789 -11.25910 -11.13030 -10.99839 -10.82059 -10.76682 -10.62462 -10.47562 -10.25478 -9.37776 -9.31119 -9.13201 -9.03206 -8.91999 -8.85919 -7.63095 -6.77772 -5.40760 1.10323 1.29142 1.44737 1.61085 2.12178 3.03759 3.10306 3.16404 3.17523 3.82867 3.99291 4.08614 4.37976 4.57412 4.63518 4.70820 4.71694 4.88534 4.99918 5.19701 5.23328 5.31988 5.38155 5.44871 5.53702 5.55146 5.64426 5.79948 5.86232 5.92185 6.20702 6.29488 6.31394 6.37620 6.46981 6.47887 6.71961 6.85389 6.91462 7.25022 7.45532 7.72967 7.90296 8.10343 8.81335 10.16228 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.004164 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.469773 B = 6722.741969 C = 7768.079711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.135 3.865 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.262 1.262 7 C -1.013 5.013 8 H 0.103 0.897 9 S 2.706 3.294 10 O -0.993 6.993 11 O -0.996 6.996 12 N -1.058 6.058 13 C 0.129 3.871 14 C -0.096 4.096 15 C -0.177 4.177 16 C 0.097 3.903 17 N -0.526 5.526 18 C 0.288 3.712 19 O -0.297 6.297 20 C 0.114 3.886 21 C -0.094 4.094 22 C -0.097 4.097 23 C -0.126 4.126 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.093 4.093 27 H 0.292 0.708 28 H 0.417 0.583 29 H 0.187 0.813 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.103 -10.143 -0.501 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.186 1.186 7 C -1.147 5.147 8 H 0.122 0.878 9 S 2.807 3.193 10 O -0.984 6.984 11 O -0.986 6.986 12 N -0.801 5.801 13 C 0.027 3.973 14 C -0.124 4.124 15 C -0.198 4.198 16 C -0.058 4.058 17 N -0.250 5.250 18 C 0.105 3.895 19 O -0.205 6.205 20 C 0.039 3.961 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.144 4.144 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.111 4.111 27 H 0.103 0.897 28 H 0.250 0.750 29 H 0.203 0.797 30 H 0.157 0.843 31 H 0.173 0.827 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.623 -10.354 -0.839 17.132 hybrid contribution 0.414 1.210 -0.182 1.292 sum 14.037 -9.144 -1.020 16.784 Atomic orbital electron populations 1.69883 1.06725 1.30937 1.39805 1.24726 0.94493 1.00793 0.88340 0.86132 0.80200 0.79801 0.79318 1.19078 1.19806 1.18601 1.30389 1.06108 1.11042 1.67182 0.87844 1.00895 0.71990 0.73264 0.73120 1.93399 1.72539 1.87268 1.45169 1.93249 1.72744 1.87365 1.45259 1.53945 1.52539 1.49260 1.24384 1.17469 0.87727 1.03569 0.88486 1.22625 1.03779 0.96697 0.89315 1.21878 0.94467 1.03253 1.00178 1.22204 0.94718 0.96701 0.92197 1.67196 1.36692 1.21114 0.99978 1.19666 0.88573 0.96633 0.84666 1.86312 1.29379 1.81749 1.23015 1.21322 0.81685 1.00679 0.92393 1.19639 1.00642 0.94234 0.94872 1.21093 0.98395 0.96674 0.95303 1.21139 0.99907 0.99293 0.94012 1.21208 0.98887 0.93297 0.99780 1.21167 1.00550 0.97319 0.95099 1.21154 0.97502 0.98497 0.93994 0.89716 0.74983 0.79655 0.84321 0.82728 0.90814 0.90944 0.85869 0.85903 0.86026 0.85806 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.26 13.19 55.43 0.73 -23.53 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 7 C -1.01 -27.83 9.68 30.60 0.30 -27.54 16 8 H 0.10 2.70 7.81 -52.49 -0.41 2.29 16 9 S 2.71 70.89 4.87 -107.50 -0.52 70.37 16 10 O -0.99 -28.85 18.02 -57.17 -1.03 -29.88 16 11 O -1.00 -27.18 14.76 -57.17 -0.84 -28.03 16 12 N -1.06 -22.35 5.66 32.60 0.18 -22.17 16 13 C 0.13 2.54 6.38 -83.40 -0.53 2.01 16 14 C -0.10 -1.80 9.33 -39.12 -0.37 -2.17 16 15 C -0.18 -2.63 10.10 -39.46 -0.40 -3.02 16 16 C 0.10 1.36 11.17 -17.54 -0.20 1.16 16 17 N -0.53 -8.46 9.22 -13.17 -0.12 -8.58 16 18 C 0.29 5.19 7.51 -16.95 -0.13 5.06 16 19 O -0.30 -5.06 9.68 -19.04 -0.18 -5.24 16 20 C 0.11 1.56 5.44 36.01 0.20 1.75 16 21 C -0.09 -1.19 5.51 -104.62 -0.58 -1.77 16 22 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 23 C -0.13 -1.27 10.05 -39.58 -0.40 -1.66 16 24 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 26 C -0.09 -1.14 9.70 -39.58 -0.38 -1.52 16 27 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.42 7.86 8.72 -34.47 -0.30 7.56 16 29 H 0.19 3.84 5.15 -52.48 -0.27 3.57 16 30 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.07 0.97 8.05 -51.93 -0.42 0.56 16 33 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -34.46 348.88 -9.23 -43.68 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.91 Total: 11.42 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -3.76 Total: -28.80 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.79 Total: -54.28 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -2.06 Total: -63.15 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 70.89 SS G_CDS: -0.52 Total: 70.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.46 -9.23 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192944006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.131 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds