Wall clock time and date at job start Tue Mar 31 2020 18:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48499 * 109.46861 * 269.99417 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99802 * 3 2 1 6 6 H 1.48502 * 109.46879 * 149.99866 * 3 2 1 7 7 C 1.37871 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00063 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99996 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.39788 * 66.46201 * 9 7 2 11 11 O 1.42095 * 106.40436 * 293.54026 * 9 7 2 12 12 N 1.65600 * 107.21541 * 179.97438 * 9 7 2 13 13 C 1.39967 * 120.00126 * 65.00752 * 12 9 7 14 14 C 1.38957 * 120.50924 * 35.26385 * 13 12 9 15 15 C 1.38759 * 118.42092 * 180.24671 * 14 13 12 16 16 C 1.38056 * 119.34702 * 359.75457 * 15 14 13 17 17 N 1.32011 * 120.97652 * 359.97421 * 16 15 14 18 18 C 1.32128 * 121.72239 * 0.02562 * 17 16 15 19 19 O 1.35776 * 119.72453 * 179.97438 * 18 17 16 20 20 C 1.42898 * 117.00243 * 359.97438 * 19 18 17 21 21 C 1.50703 * 109.47171 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99770 * 269.72826 * 21 20 19 23 23 C 1.38239 * 119.99901 * 179.76875 * 22 21 20 24 24 C 1.38240 * 119.99645 * 0.50240 * 23 22 21 25 25 C 1.38227 * 120.00205 * 359.74956 * 24 23 22 26 26 C 1.38232 * 119.99860 * 90.00268 * 21 20 19 27 27 H 0.97003 * 119.99913 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00252 * 244.99641 * 12 9 7 29 29 H 1.08007 * 120.78968 * 0.02562 * 14 13 12 30 30 H 1.07999 * 120.32487 * 179.73266 * 15 14 13 31 31 H 1.07997 * 119.50834 * 180.02562 * 16 15 14 32 32 H 1.09002 * 109.47259 * 300.00324 * 20 19 18 33 33 H 1.09001 * 109.47074 * 60.00346 * 20 19 18 34 34 H 1.08001 * 120.00330 * 359.97438 * 22 21 20 35 35 H 1.08001 * 119.99843 * 180.23314 * 23 22 21 36 36 H 1.08002 * 119.99612 * 179.72381 * 24 23 22 37 37 H 1.07996 * 120.00251 * 179.97438 * 25 24 23 38 38 H 1.07998 * 120.00407 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2484 -3.9353 0.0005 13 6 3.0996 -4.1011 1.0992 14 6 2.6455 -3.8486 2.3879 15 6 3.5276 -4.0220 3.4449 16 6 4.8175 -4.4415 3.1877 17 7 5.2213 -4.6795 1.9536 18 6 4.4155 -4.5276 0.9175 19 8 4.8736 -4.7834 -0.3348 20 6 6.2320 -5.2106 -0.4540 21 6 6.5595 -5.4441 -1.9064 22 6 6.3656 -6.6930 -2.4664 23 6 6.6615 -6.9060 -3.7999 24 6 7.1610 -5.8729 -4.5706 25 6 7.3598 -4.6254 -4.0092 26 6 7.0591 -4.4110 -2.6770 27 1 -0.4850 0.8401 -0.0004 28 1 2.3173 -4.5324 -0.7607 29 1 1.6310 -3.5217 2.5625 30 1 3.2084 -3.8304 4.4586 31 1 5.5062 -4.5777 4.0084 32 1 6.8915 -4.4412 -0.0524 33 1 6.3721 -6.1365 0.1038 34 1 5.9798 -7.5014 -1.8631 35 1 6.5064 -7.8808 -4.2383 36 1 7.3964 -6.0405 -5.6112 37 1 7.7505 -3.8184 -4.6112 38 1 7.2152 -3.4366 -2.2383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192944006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:43 Heat of formation + Delta-G solvation = -87.701123 kcal Electronic energy + Delta-G solvation = -25929.161526 eV Core-core repulsion = 22055.417379 eV Total energy + Delta-G solvation = -3873.744147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72603 -40.23874 -38.71750 -37.62919 -36.51539 -36.29530 -35.23233 -33.29068 -32.34398 -31.83834 -30.02857 -28.33748 -27.47459 -24.45755 -23.95580 -23.52886 -22.20969 -21.15126 -19.66203 -19.54652 -18.95792 -18.32381 -17.82049 -17.27670 -17.14110 -16.89426 -16.18333 -16.13854 -15.84196 -15.72362 -15.71077 -14.85671 -14.39801 -14.35107 -14.21151 -14.05905 -13.88254 -13.55499 -13.45641 -13.18564 -13.06804 -12.87639 -12.68910 -12.37793 -12.33851 -12.27620 -12.23477 -11.96611 -11.81161 -11.30067 -11.06884 -10.68627 -10.38024 -9.86377 -9.81287 -9.06558 -8.78946 -7.56245 -0.04475 0.22817 0.27031 0.33753 0.46031 1.30385 1.30731 1.47214 2.03780 2.15541 2.51503 2.65026 2.80114 2.92063 3.44366 3.51389 3.71426 3.85798 3.95318 4.04522 4.11127 4.17994 4.26076 4.27995 4.31874 4.46012 4.58914 4.61239 4.71648 4.93553 5.01266 5.06682 5.11261 5.20171 5.30219 5.50214 5.56348 5.56813 5.60668 5.80566 6.03055 6.05382 6.31133 6.70912 6.83431 8.14782 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.004164 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.469773 B = 6722.741969 C = 7768.079711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.255 1.255 6 H -0.253 1.253 7 C -1.034 5.034 8 H 0.109 0.891 9 S 2.717 3.283 10 O -1.033 7.033 11 O -1.017 7.017 12 N -1.050 6.050 13 C 0.089 3.911 14 C -0.115 4.115 15 C -0.170 4.170 16 C 0.115 3.885 17 N -0.525 5.525 18 C 0.286 3.714 19 O -0.313 6.313 20 C 0.115 3.885 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.113 4.113 27 H 0.302 0.698 28 H 0.423 0.577 29 H 0.161 0.839 30 H 0.176 0.824 31 H 0.206 0.794 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.723 -10.158 0.110 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.178 1.178 6 H -0.176 1.176 7 C -1.168 5.168 8 H 0.128 0.872 9 S 2.819 3.181 10 O -1.023 7.023 11 O -1.006 7.006 12 N -0.797 5.797 13 C -0.011 4.011 14 C -0.144 4.144 15 C -0.190 4.190 16 C -0.041 4.041 17 N -0.250 5.250 18 C 0.103 3.897 19 O -0.221 6.221 20 C 0.041 3.959 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.146 4.146 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.132 4.132 27 H 0.112 0.888 28 H 0.258 0.742 29 H 0.179 0.821 30 H 0.193 0.807 31 H 0.223 0.777 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 16.242 -10.395 -0.234 19.285 hybrid contribution -0.300 1.079 -0.307 1.161 sum 15.941 -9.316 -0.541 18.472 Atomic orbital electron populations 1.69953 1.08477 1.32596 1.40739 1.25917 0.95413 1.04954 0.87394 0.85168 0.79123 0.75008 0.80162 1.17901 1.17847 1.17621 1.30686 1.06573 1.12131 1.67423 0.87248 1.00284 0.72254 0.73585 0.72015 1.93333 1.74256 1.88044 1.46696 1.93228 1.73958 1.87833 1.45623 1.53251 1.52497 1.48358 1.25562 1.17698 0.88613 1.06657 0.88145 1.22606 1.03658 0.97715 0.90431 1.22276 0.94145 1.01859 1.00707 1.23080 0.95001 0.93462 0.92550 1.67371 1.36060 1.21130 1.00395 1.19646 0.88052 0.96444 0.85538 1.86290 1.31237 1.81735 1.22861 1.21474 0.80003 1.00952 0.93488 1.19706 1.01985 0.95173 0.94600 1.21320 0.98535 0.96493 0.96249 1.21500 0.99024 1.00604 0.93508 1.21601 0.97764 0.92763 1.01113 1.21466 1.00287 0.98475 0.94674 1.21318 0.98375 0.98496 0.94969 0.88760 0.74156 0.82143 0.80685 0.77697 0.90813 0.89950 0.84912 0.83386 0.83290 0.83952 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.05 13.19 21.45 0.28 -51.77 16 2 C 0.08 4.29 5.46 84.65 0.46 4.75 16 3 Si 0.99 41.45 29.54 68.60 2.03 43.48 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -1.03 -58.12 9.68 67.73 0.66 -57.46 16 8 H 0.11 5.81 7.81 -2.91 -0.02 5.79 16 9 S 2.72 148.42 4.87 -56.49 -0.28 148.15 16 10 O -1.03 -62.78 18.02 -128.00 -2.31 -65.08 16 11 O -1.02 -58.04 14.76 -128.00 -1.89 -59.93 16 12 N -1.05 -46.25 5.66 -50.79 -0.29 -46.54 16 13 C 0.09 3.57 6.38 38.32 0.24 3.81 16 14 C -0.12 -4.37 9.33 22.57 0.21 -4.16 16 15 C -0.17 -4.63 10.10 22.35 0.23 -4.41 16 16 C 0.11 2.80 11.17 84.62 0.95 3.74 16 17 N -0.53 -15.83 9.22 -308.45 -2.84 -18.67 16 18 C 0.29 10.21 7.51 84.96 0.64 10.85 16 19 O -0.31 -10.77 9.68 -91.04 -0.88 -11.65 16 20 C 0.12 3.11 5.44 71.24 0.39 3.49 16 21 C -0.11 -2.89 5.51 -19.87 -0.11 -3.00 16 22 C -0.11 -2.36 9.70 22.27 0.22 -2.14 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 24 C -0.11 -2.03 10.05 22.27 0.22 -1.81 16 25 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 26 C -0.11 -2.74 9.70 22.27 0.22 -2.53 16 27 H 0.30 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.42 16.87 8.72 -96.75 -0.84 16.03 16 29 H 0.16 6.91 5.15 -2.91 -0.01 6.90 16 30 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.21 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.07 1.93 8.05 -2.39 -0.02 1.91 16 33 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 34 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -77.23 348.88 -1.14 -78.37 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.27 Total: 37.05 kcal Atomic # 6 Polarization: -58.17 SS G_CDS: 4.76 Total: -53.40 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -2.85 Total: -116.99 kcal Atomic # 8 Polarization: -131.58 SS G_CDS: -5.08 Total: -136.66 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 148.42 SS G_CDS: -0.28 Total: 148.15 kcal Total: -77.23 -1.14 -78.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192944006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.327 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds