Wall clock time and date at job start Tue Mar 31 2020 17:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99957 * 2 1 4 4 S 1.65599 * 119.99873 * 180.02562 * 2 1 3 5 5 O 1.42092 * 106.40333 * 330.33436 * 4 2 1 6 6 O 1.42104 * 106.40153 * 197.41537 * 4 2 1 7 7 C 1.76203 * 107.21983 * 83.87702 * 4 2 1 8 8 C 1.38119 * 120.04027 * 246.09769 * 7 4 2 9 9 C 1.38260 * 120.08022 * 179.74093 * 8 7 4 10 10 C 1.38314 * 120.14648 * 0.26210 * 9 8 7 11 11 C 1.38079 * 120.07627 * 359.97438 * 10 9 8 12 12 C 1.38893 * 120.03891 * 66.34961 * 7 4 2 13 13 N 1.39677 * 120.07450 * 0.02562 * 12 7 4 14 14 S 1.65601 * 120.00038 * 215.48208 * 13 12 7 15 15 O 1.42100 * 106.40437 * 173.48443 * 14 13 12 16 16 O 1.42108 * 106.40182 * 306.40085 * 14 13 12 17 17 C 1.76192 * 107.22048 * 59.94223 * 14 13 12 18 18 H 1.08002 * 119.99971 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00234 * 180.02562 * 17 14 13 20 20 N 1.31510 * 119.99981 * 180.02562 * 19 17 14 21 21 Si 1.86800 * 119.99834 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.47179 * 90.00118 * 21 19 17 23 23 H 1.48493 * 109.47042 * 210.00279 * 21 19 17 24 24 H 1.48506 * 109.46953 * 330.00146 * 21 19 17 25 25 H 1.09001 * 109.47201 * 267.30347 * 1 2 3 26 26 H 1.09000 * 109.47312 * 27.30708 * 1 2 3 27 27 H 1.09000 * 109.46910 * 147.30405 * 1 2 3 28 28 H 1.09004 * 109.46863 * 270.00213 * 3 2 1 29 29 H 1.09001 * 109.46638 * 29.99809 * 3 2 1 30 30 H 1.08998 * 109.46665 * 150.00108 * 3 2 1 31 31 H 1.08006 * 119.95840 * 0.02645 * 8 7 4 32 32 H 1.07993 * 119.92859 * 180.23046 * 9 8 7 33 33 H 1.07996 * 119.96373 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.03975 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00364 * 35.47772 * 13 12 7 36 36 H 0.97001 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4679 -2.3741 0.6736 6 8 3.6201 -1.1315 0.4075 7 6 2.3983 -1.9749 -1.6743 8 6 1.7430 -3.1237 -2.0723 9 6 1.8207 -3.5459 -3.3866 10 6 2.5589 -2.8228 -4.3060 11 6 3.2205 -1.6760 -3.9138 12 6 3.1447 -1.2493 -2.5938 13 7 3.8135 -0.0902 -2.1935 14 16 3.9389 1.1939 -3.2317 15 8 4.5262 2.2540 -2.4898 16 8 4.4981 0.6842 -4.4346 17 6 2.3004 1.7093 -3.6241 18 1 1.4545 1.1926 -3.1953 19 6 2.0981 2.7717 -4.4793 20 7 0.8751 3.1568 -4.7718 21 14 3.5612 3.6650 -5.2215 22 1 3.9335 3.0221 -6.5073 23 1 3.2029 5.0855 -5.4639 24 1 4.7103 3.5975 -4.2832 25 1 -0.3634 -0.0483 1.0265 26 1 -0.3634 0.9131 -0.4714 27 1 -0.3633 -0.8648 -0.5551 28 1 2.3792 1.5834 -1.0277 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 1.1654 -3.6905 -1.3570 32 1 1.3043 -4.4425 -3.6960 33 1 2.6179 -3.1554 -5.3317 34 1 3.7965 -1.1116 -4.6322 35 1 4.2044 -0.0373 -1.3073 36 1 0.7327 3.9039 -5.3738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192978812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:27 Heat of formation + Delta-G solvation = -110.772967 kcal Electronic energy + Delta-G solvation = -26498.808452 eV Core-core repulsion = 22623.674692 eV Total energy + Delta-G solvation = -3875.133761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.34912 -37.30497 -36.11491 -35.94372 -35.74443 -34.81149 -34.67027 -33.24147 -31.07118 -28.90473 -27.87179 -26.64805 -24.50950 -23.18328 -22.46304 -19.47307 -19.00831 -18.24166 -17.86376 -17.07070 -17.01159 -16.98099 -15.95501 -15.41295 -15.01193 -14.83663 -14.47961 -14.16508 -14.07852 -13.76077 -13.51203 -13.18298 -13.03925 -12.88899 -12.43663 -12.36420 -12.23415 -12.04518 -11.95413 -11.65596 -11.54097 -11.45227 -11.38826 -11.13697 -10.90159 -10.81198 -10.68297 -10.28179 -10.00990 -9.39864 -9.29143 -9.19968 -8.89427 -8.14137 -6.99421 -5.57788 0.49825 1.01602 1.43049 1.70406 2.93500 3.02010 3.03116 3.11576 3.61734 3.77481 3.84271 3.89594 4.39196 4.42014 4.85070 4.91593 5.01579 5.08810 5.26746 5.41675 5.52785 5.59147 5.60798 5.83340 5.84722 5.91047 5.91823 6.14334 6.22885 6.26846 6.30532 6.37283 6.61553 6.66615 6.97292 7.26040 7.33737 7.99744 8.48080 10.11551 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.006459 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.279130 B = 4334.236032 C = 4931.789547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.998 5.998 3 C 0.070 3.930 4 S 2.699 3.301 5 O -0.961 6.961 6 O -0.964 6.964 7 C -0.714 4.714 8 C -0.006 4.006 9 C -0.168 4.168 10 C -0.036 4.036 11 C -0.182 4.182 12 C 0.288 3.712 13 N -1.073 6.073 14 S 2.655 3.345 15 O -0.988 6.988 16 O -0.998 6.998 17 C -1.008 5.008 18 H 0.129 0.871 19 C 0.159 3.841 20 N -0.811 5.811 21 Si 0.797 3.203 22 H -0.244 1.244 23 H -0.252 1.252 24 H -0.221 1.221 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.175 0.825 35 H 0.427 0.573 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -8.135 4.816 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.838 5.838 3 C -0.075 4.075 4 S 2.790 3.210 5 O -0.951 6.951 6 O -0.954 6.954 7 C -0.806 4.806 8 C -0.026 4.026 9 C -0.188 4.188 10 C -0.055 4.055 11 C -0.203 4.203 12 C 0.187 3.813 13 N -0.821 5.821 14 S 2.759 3.241 15 O -0.978 6.978 16 O -0.987 6.987 17 C -1.144 5.144 18 H 0.147 0.853 19 C -0.063 4.063 20 N -0.439 5.439 21 Si 0.616 3.384 22 H -0.168 1.168 23 H -0.175 1.175 24 H -0.143 1.143 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.192 0.808 35 H 0.267 0.733 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.697 -7.959 5.053 9.453 hybrid contribution -0.257 0.581 -0.874 1.081 sum -0.954 -7.378 4.179 8.532 Atomic orbital electron populations 1.21511 0.77826 1.03901 1.01825 1.57088 1.15504 1.21417 1.89749 1.21928 0.96925 0.84517 1.04089 1.01684 0.73183 0.72282 0.73873 1.93533 1.68945 1.60965 1.71697 1.93493 1.36598 1.84099 1.81198 1.30596 1.14489 1.09958 1.25550 1.20705 0.93128 0.92130 0.96670 1.21174 1.02607 1.01646 0.93421 1.21317 0.91934 0.92718 0.99487 1.22213 1.03548 0.98690 0.95891 1.16815 0.87198 0.84226 0.93033 1.54360 1.66716 1.27905 1.33086 1.02261 0.77969 0.71199 0.72660 1.93526 1.80092 1.51760 1.72398 1.93344 1.80875 1.78951 1.45561 1.30127 1.14288 1.28006 1.41929 0.85306 1.24326 0.96355 0.93665 0.91926 1.69954 1.20502 1.24167 1.29264 0.87928 0.84111 0.82304 0.84031 1.16782 1.17528 1.14276 0.92316 0.89981 0.91367 0.91069 0.89896 0.89984 0.84106 0.85252 0.84850 0.80846 0.73339 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 10.27 59.85 0.61 1.83 16 2 N -1.00 -15.30 3.58 -129.20 -0.46 -15.77 16 3 C 0.07 1.11 9.46 59.85 0.57 1.67 16 4 S 2.70 44.43 5.19 -107.50 -0.56 43.88 16 5 O -0.96 -16.22 16.31 -57.17 -0.93 -17.16 16 6 O -0.96 -17.37 14.34 -57.17 -0.82 -18.19 16 7 C -0.71 -12.03 5.93 -39.38 -0.23 -12.26 16 8 C -0.01 -0.09 9.54 -39.62 -0.38 -0.47 16 9 C -0.17 -2.21 10.04 -39.55 -0.40 -2.60 16 10 C -0.04 -0.52 10.04 -39.61 -0.40 -0.91 16 11 C -0.18 -3.32 9.27 -39.38 -0.36 -3.69 16 12 C 0.29 5.46 6.20 -83.78 -0.52 4.94 16 13 N -1.07 -21.60 4.17 32.41 0.14 -21.46 16 14 S 2.66 63.10 3.23 -107.50 -0.35 62.75 16 15 O -0.99 -24.72 15.93 -57.17 -0.91 -25.63 16 16 O -1.00 -24.62 13.81 -57.17 -0.79 -25.41 16 17 C -1.01 -25.61 9.02 30.60 0.28 -25.33 16 18 H 0.13 3.27 8.06 -52.49 -0.42 2.85 16 19 C 0.16 4.18 5.47 -17.82 -0.10 4.08 16 20 N -0.81 -21.43 13.96 55.43 0.77 -20.66 16 21 Si 0.80 19.10 26.54 -169.99 -4.51 14.58 16 22 H -0.24 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.25 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.22 -5.41 5.61 56.52 0.32 -5.09 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 27 H 0.07 0.81 8.03 -51.93 -0.42 0.39 16 28 H 0.07 1.30 5.26 -51.93 -0.27 1.03 16 29 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 30 H 0.08 1.22 7.00 -51.93 -0.36 0.85 16 31 H 0.14 1.71 7.33 -52.48 -0.38 1.33 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.17 3.42 5.18 -52.49 -0.27 3.15 16 35 H 0.43 7.97 5.88 -34.47 -0.20 7.77 16 36 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -31.14 317.54 -8.23 -39.37 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -3.66 Total: 11.66 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: -0.93 Total: -32.75 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.45 Total: -57.89 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -3.45 Total: -86.39 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.51 Total: 14.58 kcal Atomic # 16 Polarization: 107.53 SS G_CDS: -0.90 Total: 106.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.14 -8.23 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.402 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds