Wall clock time and date at job start Tue Mar 31 2020 17:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99957 * 2 1 4 4 S 1.65599 * 119.99873 * 180.02562 * 2 1 3 5 5 O 1.42092 * 106.40333 * 330.33436 * 4 2 1 6 6 O 1.42104 * 106.40153 * 197.41537 * 4 2 1 7 7 C 1.76203 * 107.21983 * 83.87702 * 4 2 1 8 8 C 1.38119 * 120.04027 * 246.09769 * 7 4 2 9 9 C 1.38260 * 120.08022 * 179.74093 * 8 7 4 10 10 C 1.38314 * 120.14648 * 0.26210 * 9 8 7 11 11 C 1.38079 * 120.07627 * 359.97438 * 10 9 8 12 12 C 1.38893 * 120.03891 * 66.34961 * 7 4 2 13 13 N 1.39677 * 120.07450 * 0.02562 * 12 7 4 14 14 S 1.65601 * 120.00038 * 215.48208 * 13 12 7 15 15 O 1.42100 * 106.40437 * 173.48443 * 14 13 12 16 16 O 1.42108 * 106.40182 * 306.40085 * 14 13 12 17 17 C 1.76192 * 107.22048 * 59.94223 * 14 13 12 18 18 H 1.08002 * 119.99971 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00234 * 180.02562 * 17 14 13 20 20 N 1.31510 * 119.99981 * 180.02562 * 19 17 14 21 21 Si 1.86800 * 119.99834 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.47179 * 90.00118 * 21 19 17 23 23 H 1.48493 * 109.47042 * 210.00279 * 21 19 17 24 24 H 1.48506 * 109.46953 * 330.00146 * 21 19 17 25 25 H 1.09001 * 109.47201 * 267.30347 * 1 2 3 26 26 H 1.09000 * 109.47312 * 27.30708 * 1 2 3 27 27 H 1.09000 * 109.46910 * 147.30405 * 1 2 3 28 28 H 1.09004 * 109.46863 * 270.00213 * 3 2 1 29 29 H 1.09001 * 109.46638 * 29.99809 * 3 2 1 30 30 H 1.08998 * 109.46665 * 150.00108 * 3 2 1 31 31 H 1.08006 * 119.95840 * 0.02645 * 8 7 4 32 32 H 1.07993 * 119.92859 * 180.23046 * 9 8 7 33 33 H 1.07996 * 119.96373 * 179.97438 * 10 9 8 34 34 H 1.07997 * 120.03975 * 180.02562 * 11 10 9 35 35 H 0.96999 * 120.00364 * 35.47772 * 13 12 7 36 36 H 0.97001 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4679 -2.3741 0.6736 6 8 3.6201 -1.1315 0.4075 7 6 2.3983 -1.9749 -1.6743 8 6 1.7430 -3.1237 -2.0723 9 6 1.8207 -3.5459 -3.3866 10 6 2.5589 -2.8228 -4.3060 11 6 3.2205 -1.6760 -3.9138 12 6 3.1447 -1.2493 -2.5938 13 7 3.8135 -0.0902 -2.1935 14 16 3.9389 1.1939 -3.2317 15 8 4.5262 2.2540 -2.4898 16 8 4.4981 0.6842 -4.4346 17 6 2.3004 1.7093 -3.6241 18 1 1.4545 1.1926 -3.1953 19 6 2.0981 2.7717 -4.4793 20 7 0.8751 3.1568 -4.7718 21 14 3.5612 3.6650 -5.2215 22 1 3.9335 3.0221 -6.5073 23 1 3.2029 5.0855 -5.4639 24 1 4.7103 3.5975 -4.2832 25 1 -0.3634 -0.0483 1.0265 26 1 -0.3634 0.9131 -0.4714 27 1 -0.3633 -0.8648 -0.5551 28 1 2.3792 1.5834 -1.0277 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1384 0.5138 31 1 1.1654 -3.6905 -1.3570 32 1 1.3043 -4.4425 -3.6960 33 1 2.6179 -3.1554 -5.3317 34 1 3.7965 -1.1116 -4.6322 35 1 4.2044 -0.0373 -1.3073 36 1 0.7327 3.9039 -5.3738 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192978812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:26 Heat of formation + Delta-G solvation = -135.806327 kcal Electronic energy + Delta-G solvation = -26499.893980 eV Core-core repulsion = 22623.674692 eV Total energy + Delta-G solvation = -3876.219289 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.054 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.62637 -38.62991 -37.94621 -37.22249 -37.05223 -36.73503 -36.06964 -35.22575 -32.29154 -30.21728 -29.04617 -28.58762 -25.68157 -24.41328 -23.77684 -21.27262 -20.33098 -19.80601 -19.37632 -18.81213 -18.38142 -18.29739 -17.32349 -17.19409 -16.47990 -16.08094 -16.01247 -15.58367 -15.41485 -15.27295 -14.99326 -14.97191 -14.49890 -14.14734 -13.83925 -13.62939 -13.56086 -13.50854 -13.36257 -13.25551 -13.12675 -12.96209 -12.72264 -12.71417 -12.60155 -12.31954 -12.21748 -11.93008 -11.57768 -11.36710 -11.20341 -10.43468 -10.07858 -9.47362 -8.98743 -7.56966 -0.75884 -0.34523 -0.11637 0.32345 1.04071 1.11869 1.18913 1.79041 1.85901 2.10077 2.38409 2.42997 2.65011 3.01887 3.17089 3.69977 3.78326 3.85203 3.96190 4.11071 4.28991 4.44610 4.49277 4.53102 4.67573 4.74850 4.89941 4.95468 4.99136 5.01941 5.06330 5.17738 5.33621 5.43620 5.47260 5.67822 5.96063 6.00177 6.48235 8.16923 Molecular weight = 334.05amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.006459 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.279130 B = 4334.236032 C = 4931.789547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.999 5.999 3 C 0.063 3.937 4 S 2.707 3.293 5 O -0.964 6.964 6 O -0.985 6.985 7 C -0.721 4.721 8 C -0.009 4.009 9 C -0.151 4.151 10 C -0.032 4.032 11 C -0.212 4.212 12 C 0.254 3.746 13 N -1.068 6.068 14 S 2.672 3.328 15 O -1.007 7.007 16 O -1.012 7.012 17 C -1.014 5.014 18 H 0.120 0.880 19 C 0.124 3.876 20 N -0.835 5.835 21 Si 0.810 3.190 22 H -0.239 1.239 23 H -0.218 1.218 24 H -0.233 1.233 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.431 0.569 36 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -9.707 4.748 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.839 5.839 3 C -0.082 4.082 4 S 2.798 3.202 5 O -0.955 6.955 6 O -0.975 6.975 7 C -0.813 4.813 8 C -0.029 4.029 9 C -0.171 4.171 10 C -0.051 4.051 11 C -0.234 4.234 12 C 0.155 3.845 13 N -0.819 5.819 14 S 2.776 3.224 15 O -0.997 6.997 16 O -1.001 7.001 17 C -1.149 5.149 18 H 0.138 0.862 19 C -0.095 4.095 20 N -0.464 5.464 21 Si 0.628 3.372 22 H -0.162 1.162 23 H -0.140 1.140 24 H -0.156 1.156 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.185 0.815 32 H 0.194 0.806 33 H 0.185 0.815 34 H 0.170 0.830 35 H 0.271 0.729 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.850 -9.523 4.977 10.903 hybrid contribution 0.016 0.915 -0.831 1.236 sum -1.834 -8.609 4.145 9.729 Atomic orbital electron populations 1.21786 0.76370 1.04443 1.03549 1.57053 1.16510 1.20700 1.89603 1.21989 0.97987 0.85473 1.02751 1.01369 0.72717 0.72368 0.73747 1.93520 1.68853 1.61241 1.71847 1.93460 1.37921 1.84437 1.81686 1.30678 1.14655 1.10772 1.25179 1.21201 0.92380 0.91202 0.98077 1.21715 1.00865 1.02228 0.92272 1.21759 0.90621 0.91118 1.01554 1.22250 1.05174 1.00522 0.95423 1.17035 0.88960 0.84535 0.94016 1.53871 1.67489 1.27848 1.32665 1.01558 0.77037 0.71317 0.72537 1.93489 1.80143 1.53309 1.72775 1.93333 1.80808 1.79328 1.46665 1.30352 1.15191 1.27768 1.41557 0.86197 1.24870 0.97828 0.94384 0.92441 1.69958 1.21246 1.25092 1.30126 0.87701 0.82151 0.83837 0.83515 1.16228 1.14032 1.15572 0.90040 0.89884 0.90456 0.93803 0.87319 0.89625 0.81490 0.80565 0.81544 0.83025 0.72861 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.27 127.77 1.31 3.31 16 2 N -1.00 -29.88 3.58 -562.66 -2.02 -31.90 16 3 C 0.06 1.99 9.46 127.77 1.21 3.20 16 4 S 2.71 86.66 5.19 -56.49 -0.29 86.36 16 5 O -0.96 -30.72 16.31 -128.00 -2.09 -32.81 16 6 O -0.99 -35.48 14.34 -128.00 -1.84 -37.31 16 7 C -0.72 -23.44 5.93 22.40 0.13 -23.31 16 8 C -0.01 -0.23 9.54 22.25 0.21 -0.02 16 9 C -0.15 -3.34 10.04 22.29 0.22 -3.12 16 10 C -0.03 -0.84 10.04 22.25 0.22 -0.62 16 11 C -0.21 -7.68 9.27 22.40 0.21 -7.47 16 12 C 0.25 9.61 6.20 38.22 0.24 9.85 16 13 N -1.07 -43.92 4.17 -51.36 -0.21 -44.13 16 14 S 2.67 129.76 3.23 -56.49 -0.18 129.58 16 15 O -1.01 -51.55 15.93 -128.00 -2.04 -53.59 16 16 O -1.01 -51.04 13.81 -128.00 -1.77 -52.81 16 17 C -1.01 -52.46 9.02 67.73 0.61 -51.85 16 18 H 0.12 6.26 8.06 -2.91 -0.02 6.24 16 19 C 0.12 6.56 5.47 84.66 0.46 7.02 16 20 N -0.83 -44.16 13.96 21.45 0.30 -43.86 16 21 Si 0.81 38.26 26.54 68.60 1.82 40.08 16 22 H -0.24 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.22 -9.08 7.11 99.48 0.71 -8.38 16 24 H -0.23 -11.45 5.61 99.48 0.56 -10.90 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.97 8.05 -2.39 -0.02 1.95 16 27 H 0.08 1.69 8.03 -2.39 -0.02 1.68 16 28 H 0.04 1.63 5.26 -2.38 -0.01 1.62 16 29 H 0.11 2.76 8.07 -2.39 -0.02 2.74 16 30 H 0.09 2.58 7.00 -2.39 -0.02 2.56 16 31 H 0.17 3.39 7.33 -2.91 -0.02 3.37 16 32 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.15 6.13 5.18 -2.91 -0.02 6.11 16 35 H 0.43 16.58 5.88 -96.75 -0.57 16.02 16 36 H 0.29 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -67.37 317.54 -3.07 -70.43 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.42 Total: 32.96 kcal Atomic # 6 Polarization: -67.83 SS G_CDS: 4.83 Total: -63.00 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -1.93 Total: -119.90 kcal Atomic # 8 Polarization: -168.79 SS G_CDS: -7.73 Total: -176.52 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.82 Total: 40.08 kcal Atomic # 16 Polarization: 216.42 SS G_CDS: -0.48 Total: 215.94 kcal Total: -67.37 -3.07 -70.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192978812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.372 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds