Wall clock time and date at job start Tue Mar 31 2020 17:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35680 * 117.00194 * 2 1 4 4 C 1.38917 * 119.68690 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11418 * 179.97438 * 4 3 2 6 6 C 1.38831 * 118.48305 * 0.02562 * 5 4 3 7 7 S 1.76201 * 120.35693 * 180.02562 * 6 5 4 8 8 O 1.42091 * 106.40431 * 199.66337 * 7 6 5 9 9 O 1.42105 * 106.39788 * 332.58164 * 7 6 5 10 10 N 1.65599 * 107.21947 * 86.12010 * 7 6 5 11 11 C 1.38232 * 119.99882 * 65.18329 * 10 7 6 12 12 C 1.38982 * 119.99872 * 5.37970 * 11 10 7 13 13 H 1.07998 * 120.00026 * 43.33310 * 12 11 10 14 14 C 1.40826 * 119.99767 * 223.33252 * 12 11 10 15 15 N 1.30334 * 120.00211 * 16.16477 * 14 12 11 16 16 Si 1.86799 * 119.99566 * 196.16407 * 14 12 11 17 17 H 1.48492 * 109.47564 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47148 * 120.00194 * 16 14 12 19 19 H 1.48501 * 109.47145 * 239.99728 * 16 14 12 20 20 C 1.41157 * 119.99739 * 185.38412 * 11 10 7 21 21 C 1.43202 * 119.99468 * 187.31112 * 20 11 10 22 22 N 8.58767 * 90.88428 * 320.92497 * 2 1 3 23 23 C 1.43199 * 120.00196 * 7.30778 * 20 11 10 24 24 N 8.75920 * 120.57706 * 321.11145 * 2 1 3 25 25 C 1.38046 * 119.28912 * 359.97438 * 6 5 4 26 26 N 1.31959 * 120.83333 * 0.02774 * 25 6 5 27 27 H 1.08996 * 109.47650 * 300.00480 * 1 2 3 28 28 H 1.09007 * 109.47147 * 60.00654 * 1 2 3 29 29 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08008 * 120.44130 * 0.27385 * 4 3 2 31 31 H 1.07997 * 120.76335 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99731 * 245.18423 * 10 7 6 33 33 H 0.97003 * 119.99803 * 184.93698 * 15 14 12 34 34 H 1.08003 * 119.58309 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2504 3.6491 -0.0005 7 16 3.9827 5.2517 -0.0019 8 8 2.9821 6.1505 0.4565 9 8 5.2503 5.1142 0.6255 10 7 4.2832 5.6520 -1.5805 11 6 3.2322 5.8288 -2.4608 12 6 1.9226 5.7811 -1.9980 13 1 1.6563 6.2810 -1.0785 14 6 0.9429 5.0808 -2.7281 15 7 1.3002 4.2272 -3.6459 16 14 -0.8688 5.3754 -2.3809 17 1 -1.0081 6.3843 -1.3003 18 1 -1.5342 5.8727 -3.6119 19 1 -1.5044 4.1029 -1.9544 20 6 3.4892 6.0576 -3.8298 21 6 2.4140 6.3956 -4.7132 22 7 1.5615 6.6660 -5.4125 23 6 4.8249 5.9517 -4.3351 24 7 5.8847 5.8698 -4.7344 25 6 1.8770 3.5096 -0.0010 26 7 1.3186 2.3140 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 4.0228 0.3694 -0.0035 31 1 5.1254 2.5947 0.0000 32 1 5.1967 5.7625 -1.8873 33 1 0.6274 3.7983 -4.1975 34 1 1.2517 4.3902 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195742008.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:53 Heat of formation + Delta-G solvation = -10.945060 kcal Electronic energy + Delta-G solvation = -26544.771290 eV Core-core repulsion = 22570.815192 eV Total energy + Delta-G solvation = -3973.956098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.59526 -38.01305 -37.71315 -36.88353 -35.63693 -35.03480 -34.82498 -33.52687 -32.56622 -30.93567 -29.74234 -27.50676 -27.07913 -23.83005 -23.21509 -22.15386 -19.95873 -18.70926 -18.51979 -18.19101 -17.40743 -17.08633 -16.89116 -16.15442 -16.02439 -15.34693 -14.80307 -14.61413 -14.25341 -13.74625 -13.56479 -13.44918 -13.21679 -13.02761 -12.61416 -12.46782 -12.26838 -12.05515 -12.00437 -11.87907 -11.78348 -11.65741 -11.57629 -11.35479 -11.30762 -11.04377 -10.95768 -10.92339 -10.66950 -10.24804 -10.04178 -9.63971 -9.59061 -8.80874 -7.51384 -7.30662 -5.48498 0.52322 0.90062 1.25377 2.28202 2.87640 2.91381 2.93819 2.97706 3.16828 3.59219 3.63753 3.74613 3.98271 4.04055 4.28344 4.33409 4.34568 4.52657 4.89093 5.05434 5.12681 5.18833 5.22959 5.23513 5.46485 5.52338 5.63424 5.71893 5.75154 5.92629 6.24777 6.34355 6.50867 6.92285 7.06750 7.31621 7.65709 7.75341 7.93148 8.00726 8.80067 9.21860 9.48233 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.006609 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.964810 B = 4235.701148 C = 5445.800215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.305 6.305 3 C 0.368 3.632 4 C -0.216 4.216 5 C 0.057 3.943 6 C -0.754 4.754 7 S 2.711 3.289 8 O -0.940 6.940 9 O -0.965 6.965 10 N -1.046 6.046 11 C 0.421 3.579 12 C -0.505 4.505 13 H 0.142 0.858 14 C 0.095 3.905 15 N -0.724 5.724 16 Si 0.897 3.103 17 H -0.243 1.243 18 H -0.259 1.259 19 H -0.261 1.261 20 C -0.252 4.252 21 C 0.349 3.651 22 N -0.525 5.525 23 C 0.300 3.700 24 N -0.524 5.524 25 C 0.275 3.725 26 N -0.552 5.552 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.416 0.584 33 H 0.300 0.700 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 -7.653 10.473 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.211 6.211 3 C 0.189 3.811 4 C -0.237 4.237 5 C 0.031 3.969 6 C -0.844 4.844 7 S 2.802 3.198 8 O -0.930 6.930 9 O -0.956 6.956 10 N -0.789 5.789 11 C 0.314 3.686 12 C -0.536 4.536 13 H 0.160 0.840 14 C -0.136 4.136 15 N -0.344 5.344 16 Si 0.718 3.282 17 H -0.166 1.166 18 H -0.183 1.183 19 H -0.185 1.185 20 C -0.272 4.272 21 C 0.039 3.961 22 N -0.207 5.207 23 C -0.007 4.007 24 N -0.206 5.206 25 C 0.117 3.883 26 N -0.276 5.276 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.251 0.749 33 H 0.112 0.888 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.631 -7.522 9.519 12.415 hybrid contribution -0.061 -0.650 -0.345 0.739 sum -2.692 -8.173 9.175 12.578 Atomic orbital electron populations 1.22934 0.76854 1.02983 1.03062 1.86243 1.23369 1.24786 1.86736 1.20135 0.89570 0.84888 0.86522 1.21005 0.92031 0.99543 1.11159 1.21062 1.00202 0.90142 0.85532 1.31415 1.05806 1.22769 1.24370 1.01415 0.73101 0.73766 0.71551 1.93568 1.59822 1.60844 1.78735 1.93576 1.41739 1.87292 1.72956 1.53962 1.15392 1.79235 1.30288 1.16771 0.85072 0.81232 0.85575 1.20197 0.91089 1.29722 1.12631 0.84045 1.25930 1.02630 0.91810 0.93211 1.69462 1.39068 1.13773 1.12049 0.86325 0.80075 0.80581 0.81244 1.16572 1.18291 1.18524 1.12677 0.81959 1.42082 0.90440 1.24208 0.91332 0.89547 0.91035 1.80956 1.10574 1.18098 1.11063 1.25397 0.92190 0.90517 0.92607 1.81081 1.12687 1.18524 1.08337 1.22399 0.90727 0.94251 0.80958 1.67494 1.40301 0.98735 1.21092 0.91969 0.91766 0.88587 0.83569 0.82862 0.74852 0.88803 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -4.04 10.48 -18.74 -0.20 -4.24 16 3 C 0.37 5.44 7.49 -17.12 -0.13 5.31 16 4 C -0.22 -2.86 10.04 -39.28 -0.39 -3.26 16 5 C 0.06 0.77 9.64 -39.31 -0.38 0.39 16 6 C -0.75 -11.68 5.70 -39.43 -0.22 -11.90 16 7 S 2.71 43.52 5.36 -107.50 -0.58 42.94 16 8 O -0.94 -16.47 14.40 -57.17 -0.82 -17.30 16 9 O -0.97 -16.14 17.46 -57.17 -1.00 -17.14 16 10 N -1.05 -17.74 5.73 32.59 0.19 -17.55 16 11 C 0.42 8.34 6.12 -83.59 -0.51 7.83 16 12 C -0.51 -10.04 4.89 -38.33 -0.19 -10.23 16 13 H 0.14 2.70 5.38 -52.49 -0.28 2.42 16 14 C 0.10 1.93 3.72 -17.21 -0.06 1.87 16 15 N -0.72 -15.39 11.15 55.59 0.62 -14.77 16 16 Si 0.90 16.32 29.60 -169.99 -5.03 11.29 16 17 H -0.24 -4.25 7.11 56.52 0.40 -3.84 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 20 C -0.25 -5.44 5.35 -104.94 -0.56 -6.00 16 21 C 0.35 8.14 11.67 -22.49 -0.26 7.88 16 22 N -0.53 -12.76 18.53 41.81 0.77 -11.98 16 23 C 0.30 6.49 14.12 -22.49 -0.32 6.17 16 24 N -0.52 -11.62 18.53 41.82 0.78 -10.85 16 25 C 0.27 4.46 9.15 -17.57 -0.16 4.30 16 26 N -0.55 -8.84 9.22 -13.33 -0.12 -8.96 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.06 0.74 8.10 -51.92 -0.42 0.32 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.15 1.70 7.79 -52.49 -0.41 1.29 16 32 H 0.42 6.51 7.72 -34.47 -0.27 6.24 16 33 H 0.30 6.13 8.29 -40.82 -0.34 5.79 16 34 H 0.18 2.87 6.12 -52.48 -0.32 2.55 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -27.54 327.76 -4.69 -32.24 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.10 Total: 7.60 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.14 Total: 3.80 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: 2.23 Total: -64.11 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -2.02 Total: -38.68 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Atomic # 16 Polarization: 43.52 SS G_CDS: -0.58 Total: 42.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.54 -4.69 -32.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195742008.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.291 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds