Wall clock time and date at job start Tue Mar 31 2020 17:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35680 * 117.00194 * 2 1 4 4 C 1.38917 * 119.68690 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11418 * 179.97438 * 4 3 2 6 6 C 1.38831 * 118.48305 * 0.02562 * 5 4 3 7 7 S 1.76201 * 120.35693 * 180.02562 * 6 5 4 8 8 O 1.42091 * 106.40431 * 199.66337 * 7 6 5 9 9 O 1.42105 * 106.39788 * 332.58164 * 7 6 5 10 10 N 1.65599 * 107.21947 * 86.12010 * 7 6 5 11 11 C 1.38232 * 119.99882 * 65.18329 * 10 7 6 12 12 C 1.38982 * 119.99872 * 5.37970 * 11 10 7 13 13 H 1.07998 * 120.00026 * 43.33310 * 12 11 10 14 14 C 1.40826 * 119.99767 * 223.33252 * 12 11 10 15 15 N 1.30334 * 120.00211 * 16.16477 * 14 12 11 16 16 Si 1.86799 * 119.99566 * 196.16407 * 14 12 11 17 17 H 1.48492 * 109.47564 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47148 * 120.00194 * 16 14 12 19 19 H 1.48501 * 109.47145 * 239.99728 * 16 14 12 20 20 C 1.41157 * 119.99739 * 185.38412 * 11 10 7 21 21 C 1.43202 * 119.99468 * 187.31112 * 20 11 10 22 22 N 8.58767 * 90.88428 * 320.92497 * 2 1 3 23 23 C 1.43199 * 120.00196 * 7.30778 * 20 11 10 24 24 N 8.75920 * 120.57706 * 321.11145 * 2 1 3 25 25 C 1.38046 * 119.28912 * 359.97438 * 6 5 4 26 26 N 1.31959 * 120.83333 * 0.02774 * 25 6 5 27 27 H 1.08996 * 109.47650 * 300.00480 * 1 2 3 28 28 H 1.09007 * 109.47147 * 60.00654 * 1 2 3 29 29 H 1.09001 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08008 * 120.44130 * 0.27385 * 4 3 2 31 31 H 1.07997 * 120.76335 * 180.02562 * 5 4 3 32 32 H 0.97001 * 119.99731 * 245.18423 * 10 7 6 33 33 H 0.97003 * 119.99803 * 184.93698 * 15 14 12 34 34 H 1.08003 * 119.58309 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2504 3.6491 -0.0005 7 16 3.9827 5.2517 -0.0019 8 8 2.9821 6.1505 0.4565 9 8 5.2503 5.1142 0.6255 10 7 4.2832 5.6520 -1.5805 11 6 3.2322 5.8288 -2.4608 12 6 1.9226 5.7811 -1.9980 13 1 1.6563 6.2810 -1.0785 14 6 0.9429 5.0808 -2.7281 15 7 1.3002 4.2272 -3.6459 16 14 -0.8688 5.3754 -2.3809 17 1 -1.0081 6.3843 -1.3003 18 1 -1.5342 5.8727 -3.6119 19 1 -1.5044 4.1029 -1.9544 20 6 3.4892 6.0576 -3.8298 21 6 2.4140 6.3956 -4.7132 22 7 1.5615 6.6660 -5.4125 23 6 4.8249 5.9517 -4.3351 24 7 5.8847 5.8698 -4.7344 25 6 1.8770 3.5096 -0.0010 26 7 1.3186 2.3140 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 4.0228 0.3694 -0.0035 31 1 5.1254 2.5947 0.0000 32 1 5.1967 5.7625 -1.8873 33 1 0.6274 3.7983 -4.1975 34 1 1.2517 4.3902 -0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195742008.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:52 Heat of formation + Delta-G solvation = -31.428192 kcal Electronic energy + Delta-G solvation = -26545.659506 eV Core-core repulsion = 22570.815192 eV Total energy + Delta-G solvation = -3974.844313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 334.057 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67801 -39.34078 -38.96478 -38.27693 -36.99279 -36.72673 -36.56424 -35.12825 -33.67771 -32.03820 -31.34173 -28.83163 -28.29383 -24.96718 -24.28824 -23.72340 -21.43859 -20.16743 -19.70960 -19.58506 -18.68893 -18.39645 -18.20841 -17.55779 -17.10488 -16.87656 -16.10393 -15.68815 -15.29585 -15.04941 -14.96004 -14.70599 -14.56735 -14.36550 -14.22760 -13.99324 -13.87481 -13.51848 -13.40211 -13.32254 -13.23817 -13.11800 -12.87717 -12.87337 -12.70308 -12.64172 -12.34962 -12.18346 -12.09812 -11.81424 -11.18805 -11.12731 -10.79068 -9.90123 -9.10631 -8.93081 -7.13358 -0.75845 -0.27547 0.15938 0.68812 1.38593 1.45323 1.52820 1.82138 1.97344 2.01358 2.10028 2.28908 2.44293 2.55752 2.63168 2.81109 3.20578 3.28596 3.46827 3.77270 3.87121 3.98867 4.04573 4.25780 4.39057 4.40830 4.55595 4.58847 4.67521 4.74933 4.82536 4.91405 5.27770 5.34212 5.78902 6.02387 6.09485 6.33405 6.42311 6.61669 7.09344 7.42318 7.89095 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.006609 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.964810 B = 4235.701148 C = 5445.800215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.354 3.646 4 C -0.212 4.212 5 C 0.053 3.947 6 C -0.762 4.762 7 S 2.727 3.273 8 O -0.954 6.954 9 O -0.968 6.968 10 N -1.041 6.041 11 C 0.430 3.570 12 C -0.504 4.504 13 H 0.151 0.849 14 C 0.078 3.922 15 N -0.741 5.741 16 Si 0.927 3.073 17 H -0.230 1.230 18 H -0.279 1.279 19 H -0.248 1.248 20 C -0.272 4.272 21 C 0.352 3.648 22 N -0.553 5.553 23 C 0.308 3.692 24 N -0.538 5.538 25 C 0.260 3.740 26 N -0.565 5.565 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.129 0.871 30 H 0.177 0.823 31 H 0.180 0.820 32 H 0.423 0.577 33 H 0.301 0.699 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -8.846 11.714 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.213 6.213 3 C 0.176 3.824 4 C -0.233 4.233 5 C 0.027 3.973 6 C -0.853 4.853 7 S 2.819 3.181 8 O -0.945 6.945 9 O -0.959 6.959 10 N -0.783 5.783 11 C 0.321 3.679 12 C -0.535 4.535 13 H 0.168 0.832 14 C -0.152 4.152 15 N -0.361 5.361 16 Si 0.746 3.254 17 H -0.152 1.152 18 H -0.204 1.204 19 H -0.172 1.172 20 C -0.292 4.292 21 C 0.043 3.957 22 N -0.235 5.235 23 C 0.001 3.999 24 N -0.221 5.221 25 C 0.101 3.899 26 N -0.290 5.290 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.194 0.806 31 H 0.197 0.803 32 H 0.259 0.741 33 H 0.112 0.888 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.467 -8.707 10.776 14.072 hybrid contribution -0.143 -0.381 -0.652 0.769 sum -2.609 -9.089 10.124 13.853 Atomic orbital electron populations 1.23158 0.75533 1.05059 1.02489 1.86252 1.24695 1.23973 1.86422 1.20493 0.90434 0.85031 0.86458 1.21381 0.91730 1.00563 1.09592 1.21453 1.01436 0.89694 0.84695 1.31260 1.05769 1.22703 1.25558 1.00884 0.72677 0.73724 0.70839 1.93540 1.60238 1.61894 1.78787 1.93570 1.42060 1.87493 1.72760 1.53880 1.15230 1.78883 1.30295 1.16725 0.85727 0.80233 0.85259 1.20415 0.91219 1.29170 1.12734 0.83176 1.26364 1.04566 0.91435 0.92785 1.69489 1.39741 1.14322 1.12532 0.85882 0.77548 0.81361 0.80573 1.15164 1.20406 1.17168 1.12735 0.81520 1.43878 0.91035 1.24516 0.91324 0.89054 0.90816 1.80940 1.11334 1.19552 1.11707 1.25350 0.92052 0.90144 0.92314 1.81080 1.13008 1.19397 1.08574 1.22426 0.91119 0.94473 0.81839 1.67456 1.40912 0.99007 1.21636 0.91786 0.93059 0.85256 0.80592 0.80310 0.74076 0.88767 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.38 113.37 1.18 1.79 16 2 O -0.31 -7.52 10.48 -89.97 -0.94 -8.46 16 3 C 0.35 9.84 7.49 84.79 0.63 10.48 16 4 C -0.21 -5.06 10.04 22.46 0.23 -4.83 16 5 C 0.05 1.31 9.64 22.44 0.22 1.53 16 6 C -0.76 -22.36 5.70 22.37 0.13 -22.23 16 7 S 2.73 83.47 5.36 -56.49 -0.30 83.17 16 8 O -0.95 -32.30 14.40 -128.00 -1.84 -34.14 16 9 O -0.97 -30.51 17.46 -128.00 -2.23 -32.75 16 10 N -1.04 -34.01 5.73 -50.80 -0.29 -34.30 16 11 C 0.43 16.63 6.12 39.03 0.24 16.87 16 12 C -0.50 -19.56 4.89 23.08 0.11 -19.45 16 13 H 0.15 5.55 5.38 -2.91 -0.02 5.54 16 14 C 0.08 3.11 3.72 85.55 0.32 3.42 16 15 N -0.74 -31.15 11.15 21.98 0.25 -30.91 16 16 Si 0.93 32.45 29.60 68.60 2.03 34.49 16 17 H -0.23 -7.51 7.11 99.48 0.71 -6.81 16 18 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 20 C -0.27 -11.61 5.35 -20.07 -0.11 -11.71 16 21 C 0.35 16.38 11.67 88.34 1.03 17.41 16 22 N -0.55 -26.91 18.53 19.00 0.35 -26.56 16 23 C 0.31 13.13 14.12 88.34 1.25 14.38 16 24 N -0.54 -23.44 18.53 19.00 0.35 -23.09 16 25 C 0.26 8.14 9.15 84.63 0.77 8.91 16 26 N -0.57 -17.39 9.22 -308.96 -2.85 -20.24 16 27 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 28 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 29 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.18 3.41 7.79 -2.91 -0.02 3.39 16 32 H 0.42 12.68 7.72 -96.75 -0.75 11.94 16 33 H 0.30 12.22 8.29 -92.71 -0.77 11.46 16 34 H 0.18 5.51 6.12 -2.91 -0.02 5.49 16 Total: -1.00 -56.77 327.76 0.98 -55.79 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.47 Total: 20.44 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 6.00 Total: 16.57 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -2.19 Total: -135.11 kcal Atomic # 8 Polarization: -70.33 SS G_CDS: -5.02 Total: -75.35 kcal Atomic # 14 Polarization: 32.45 SS G_CDS: 2.03 Total: 34.49 kcal Atomic # 16 Polarization: 83.47 SS G_CDS: -0.30 Total: 83.17 kcal Total: -56.77 0.98 -55.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195742008.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.362 kcal (2) G-P(sol) polarization free energy of solvation -56.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds