Wall clock time and date at job start Tue Mar 31 2020 17:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47349 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46994 * 300.00358 * 3 2 1 6 6 H 1.48497 * 109.47048 * 59.99824 * 3 2 1 7 7 C 1.37877 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47409 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47467 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47314 * 179.97438 * 11 10 9 13 13 O 1.42109 * 110.53829 * 68.37240 * 12 11 10 14 14 O 1.42100 * 110.54290 * 291.62934 * 12 11 10 15 15 O 1.52191 * 104.45202 * 179.97438 * 12 11 10 16 16 C 1.35639 * 113.99911 * 74.99671 * 15 12 11 17 17 C 1.38552 * 120.13173 * 90.00523 * 16 15 12 18 18 C 1.38325 * 120.11793 * 180.02562 * 17 16 15 19 19 F 1.35094 * 119.80815 * 180.02562 * 18 17 16 20 20 C 1.39116 * 120.38235 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.87102 * 179.97438 * 20 18 17 22 22 C 1.37715 * 120.26540 * 359.97438 * 20 18 17 23 23 C 1.40141 * 119.87770 * 0.02562 * 22 20 18 24 24 C 1.46627 * 120.18665 * 180.02562 * 23 22 20 25 25 O 1.21316 * 120.00047 * 359.97438 * 24 23 22 26 26 H 0.96992 * 119.99815 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47109 * 60.00604 * 9 7 2 28 28 H 1.08996 * 109.47387 * 300.00521 * 9 7 2 29 29 H 1.08998 * 109.47171 * 59.99926 * 10 9 7 30 30 H 1.09004 * 109.47337 * 300.00269 * 10 9 7 31 31 H 1.09001 * 109.46754 * 60.00319 * 11 10 9 32 32 H 1.08996 * 109.47168 * 300.00170 * 11 10 9 33 33 H 1.08001 * 119.93572 * 0.04056 * 17 16 15 34 34 H 1.08001 * 120.05955 * 179.72415 * 22 20 18 35 35 H 1.08009 * 119.99854 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3659 -0.0019 13 8 3.3561 -6.4267 1.2351 14 8 3.3560 -6.4255 -1.2390 15 8 1.7859 -7.6123 -0.0019 16 6 1.2061 -7.8797 -1.1986 17 6 1.8566 -8.6811 -2.1229 18 6 1.2653 -8.9532 -3.3435 19 9 1.9049 -9.7358 -4.2399 20 6 0.0159 -8.4257 -3.6532 21 9 -0.5518 -8.6978 -4.8486 22 6 -0.6447 -7.6273 -2.7462 23 6 -0.0559 -7.3444 -1.5064 24 6 -0.7534 -6.4956 -0.5354 25 8 -1.8432 -6.0355 -0.8045 26 1 -0.4849 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 0.8541 -5.0445 -0.8914 32 1 0.8534 -5.0451 0.8885 33 1 2.8269 -9.0941 -1.8899 34 1 -1.6126 -7.2159 -2.9919 35 1 -0.2966 -6.2792 0.4191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196245827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:23 Heat of formation + Delta-G solvation = -196.510940 kcal Electronic energy + Delta-G solvation = -26666.531723 eV Core-core repulsion = 22201.546947 eV Total energy + Delta-G solvation = -4464.984776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.056 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.09970 -49.16125 -41.88480 -39.53735 -37.98466 -37.38466 -36.30208 -34.95132 -32.44778 -31.91092 -30.84910 -28.21209 -25.84844 -24.47547 -23.88885 -22.23613 -21.48049 -20.47760 -19.16130 -18.67793 -18.29404 -18.04108 -17.32925 -16.90552 -16.83863 -16.20199 -15.85818 -15.71693 -15.53917 -15.40060 -14.91794 -14.84946 -14.62022 -14.49742 -14.44163 -13.98638 -13.26490 -12.94743 -12.72317 -12.46832 -12.39005 -12.38435 -12.26153 -12.15189 -12.07559 -11.48432 -11.02386 -10.99724 -10.52879 -10.30814 -10.08783 -9.87988 -9.57213 -9.39778 -9.21805 -8.46866 -6.11018 -4.15035 -0.66820 -0.14101 0.32132 1.61827 1.66416 2.60235 2.94276 3.26156 3.33835 3.35181 3.37209 3.38709 3.49191 3.64074 3.76634 4.06606 4.26140 4.36842 4.42403 4.71763 4.73976 4.85701 5.01714 5.10526 5.16085 5.25483 5.31810 5.54417 5.88518 6.06500 6.21030 6.70702 6.78419 7.48087 7.55790 7.85668 8.24328 8.91159 9.50416 10.99984 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003465 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.227212 B = 8079.001454 C = 8783.537980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.101 4.101 11 C -0.642 4.642 12 S 2.573 3.427 13 O -0.913 6.913 14 O -0.944 6.944 15 O -0.662 6.662 16 C 0.143 3.857 17 C -0.114 4.114 18 C 0.122 3.878 19 F -0.109 7.109 20 C 0.075 3.925 21 F -0.114 7.114 22 C -0.050 4.050 23 C -0.179 4.179 24 C 0.366 3.634 25 O -0.420 6.420 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -20.489 -4.319 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.140 4.140 11 C -0.771 4.771 12 S 2.671 3.329 13 O -0.911 6.911 14 O -0.943 6.943 15 O -0.620 6.620 16 C 0.099 3.901 17 C -0.135 4.135 18 C 0.101 3.899 19 F -0.088 7.088 20 C 0.054 3.946 21 F -0.092 7.092 22 C -0.069 4.069 23 C -0.183 4.183 24 C 0.221 3.779 25 O -0.289 6.289 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.190 0.810 34 H 0.192 0.808 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.414 -20.678 -4.342 21.133 hybrid contribution 0.144 1.101 -0.277 1.144 sum -0.270 -19.577 -4.619 20.117 Atomic orbital electron populations 1.69964 1.06085 1.26803 1.50258 1.25018 0.94878 0.99410 0.94984 0.86498 0.80155 0.83484 0.77668 1.19588 1.20936 1.20904 1.21234 0.93270 0.90711 1.51452 0.92233 1.19093 0.93459 0.90352 0.97992 1.21532 0.99370 0.90506 1.02565 1.31212 1.17070 1.17702 1.11101 1.06266 0.76202 0.75280 0.75111 1.93659 1.68691 1.84237 1.44541 1.93654 1.71031 1.84103 1.45478 1.85755 1.72333 1.64548 1.39365 1.17680 0.91720 0.99152 0.81505 1.21095 1.02283 0.99032 0.91051 1.17467 0.90331 0.93908 0.88204 1.91616 1.80668 1.70903 1.65564 1.17545 0.91977 1.01092 0.83972 1.91610 1.83909 1.92030 1.41683 1.21246 1.01185 0.94277 0.90175 1.21125 0.95114 1.04014 0.98014 1.24159 0.86317 0.76436 0.90939 1.90627 1.19401 1.40556 1.78347 0.92851 0.96015 0.95862 0.90890 0.91067 0.85558 0.83985 0.81026 0.80753 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 10 C -0.10 -1.83 5.16 -26.73 -0.14 -1.97 16 11 C -0.64 -8.68 3.99 37.16 0.15 -8.53 16 12 S 2.57 33.57 5.16 -107.50 -0.56 33.01 16 13 O -0.91 -14.43 18.09 -67.04 -1.21 -15.64 16 14 O -0.94 -13.77 16.26 -67.03 -1.09 -14.86 16 15 O -0.66 -7.01 9.35 -50.94 -0.48 -7.49 16 16 C 0.14 1.44 4.82 -38.62 -0.19 1.25 16 17 C -0.11 -1.05 9.00 -39.43 -0.36 -1.41 16 18 C 0.12 1.12 7.31 -39.22 -0.29 0.83 16 19 F -0.11 -1.04 17.17 2.25 0.04 -1.00 16 20 C 0.08 0.68 7.29 -39.45 -0.29 0.39 16 21 F -0.11 -1.09 17.17 2.25 0.04 -1.05 16 22 C -0.05 -0.44 9.56 -39.06 -0.37 -0.81 16 23 C -0.18 -1.74 5.30 -104.95 -0.56 -2.30 16 24 C 0.37 3.87 8.36 34.12 0.29 4.15 16 25 O -0.42 -5.67 17.16 5.53 0.09 -5.58 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.13 1.55 5.65 -51.92 -0.29 1.26 16 32 H 0.14 1.56 6.75 -51.93 -0.35 1.21 16 33 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.18 1.33 7.65 -52.49 -0.40 0.93 16 35 H 0.12 0.99 5.06 -52.48 -0.27 0.72 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -33.30 326.62 -7.79 -41.09 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -2.97 Total: -3.35 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -2.30 Total: -20.89 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.74 Total: -25.20 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.68 Total: -43.57 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.08 Total: -2.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 33.57 SS G_CDS: -0.56 Total: 33.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.30 -7.79 -41.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196245827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.425 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds