Wall clock time and date at job start Tue Mar 31 2020 17:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00047 * 2 1 4 4 H 1.48495 * 109.47349 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46994 * 300.00358 * 3 2 1 6 6 H 1.48497 * 109.47048 * 59.99824 * 3 2 1 7 7 C 1.37877 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47409 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47467 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47314 * 179.97438 * 11 10 9 13 13 O 1.42109 * 110.53829 * 68.37240 * 12 11 10 14 14 O 1.42100 * 110.54290 * 291.62934 * 12 11 10 15 15 O 1.52191 * 104.45202 * 179.97438 * 12 11 10 16 16 C 1.35639 * 113.99911 * 74.99671 * 15 12 11 17 17 C 1.38552 * 120.13173 * 90.00523 * 16 15 12 18 18 C 1.38325 * 120.11793 * 180.02562 * 17 16 15 19 19 F 1.35094 * 119.80815 * 180.02562 * 18 17 16 20 20 C 1.39116 * 120.38235 * 0.02562 * 18 17 16 21 21 F 1.35099 * 119.87102 * 179.97438 * 20 18 17 22 22 C 1.37715 * 120.26540 * 359.97438 * 20 18 17 23 23 C 1.40141 * 119.87770 * 0.02562 * 22 20 18 24 24 C 1.46627 * 120.18665 * 180.02562 * 23 22 20 25 25 O 1.21316 * 120.00047 * 359.97438 * 24 23 22 26 26 H 0.96992 * 119.99815 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47109 * 60.00604 * 9 7 2 28 28 H 1.08996 * 109.47387 * 300.00521 * 9 7 2 29 29 H 1.08998 * 109.47171 * 59.99926 * 10 9 7 30 30 H 1.09004 * 109.47337 * 300.00269 * 10 9 7 31 31 H 1.09001 * 109.46754 * 60.00319 * 11 10 9 32 32 H 1.08996 * 109.47168 * 300.00170 * 11 10 9 33 33 H 1.08001 * 119.93572 * 0.04056 * 17 16 15 34 34 H 1.08001 * 120.05955 * 179.72415 * 22 20 18 35 35 H 1.08009 * 119.99854 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3659 -0.0019 13 8 3.3561 -6.4267 1.2351 14 8 3.3560 -6.4255 -1.2390 15 8 1.7859 -7.6123 -0.0019 16 6 1.2061 -7.8797 -1.1986 17 6 1.8566 -8.6811 -2.1229 18 6 1.2653 -8.9532 -3.3435 19 9 1.9049 -9.7358 -4.2399 20 6 0.0159 -8.4257 -3.6532 21 9 -0.5518 -8.6978 -4.8486 22 6 -0.6447 -7.6273 -2.7462 23 6 -0.0559 -7.3444 -1.5064 24 6 -0.7534 -6.4956 -0.5354 25 8 -1.8432 -6.0355 -0.8045 26 1 -0.4849 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 0.8541 -5.0445 -0.8914 32 1 0.8534 -5.0451 0.8885 33 1 2.8269 -9.0941 -1.8899 34 1 -1.6126 -7.2159 -2.9919 35 1 -0.2966 -6.2792 0.4191 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196245827.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:22 Heat of formation + Delta-G solvation = -218.138546 kcal Electronic energy + Delta-G solvation = -26667.469566 eV Core-core repulsion = 22201.546947 eV Total energy + Delta-G solvation = -4465.922619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.056 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.85252 -49.91620 -42.75275 -40.44904 -38.82579 -38.49538 -37.43919 -36.56388 -34.27804 -32.74787 -31.65828 -29.87132 -26.83832 -25.55036 -25.27248 -23.06467 -22.78607 -21.69554 -20.07886 -19.55218 -19.17009 -18.98474 -18.59231 -18.09187 -17.63970 -17.60176 -16.83416 -16.60733 -16.50045 -16.32554 -16.28356 -15.92253 -15.59435 -15.56870 -15.47357 -14.82563 -14.53533 -14.27451 -14.08021 -13.74260 -13.65945 -13.49009 -13.44523 -13.09499 -13.05277 -13.02339 -12.80105 -12.65975 -12.21619 -11.78247 -11.39753 -11.18560 -11.09822 -10.61439 -10.56419 -10.20435 -8.21023 -6.31658 -1.58026 -1.00546 -0.50320 0.70099 0.80837 1.40946 1.42545 1.54742 1.82267 2.18588 2.29795 2.41792 2.58673 2.61690 2.78901 2.99390 3.13451 3.20145 3.49432 3.50241 3.62225 3.77744 4.09241 4.25171 4.31439 4.37020 4.42384 4.48111 4.61674 4.78656 5.05989 5.13832 5.48130 5.63945 5.81373 5.94761 6.20415 6.85153 7.38136 8.90427 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003465 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.227212 B = 8079.001454 C = 8783.537980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.099 4.099 11 C -0.649 4.649 12 S 2.605 3.395 13 O -0.939 6.939 14 O -0.958 6.958 15 O -0.648 6.648 16 C 0.129 3.871 17 C -0.111 4.111 18 C 0.124 3.876 19 F -0.110 7.110 20 C 0.079 3.921 21 F -0.116 7.116 22 C -0.045 4.045 23 C -0.180 4.180 24 C 0.368 3.632 25 O -0.453 6.453 26 H 0.264 0.736 27 H 0.001 0.999 28 H 0.006 0.994 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.190 0.810 34 H 0.186 0.814 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -21.220 -4.493 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.586 4.586 8 H 0.082 0.918 9 C -0.010 4.010 10 C -0.138 4.138 11 C -0.777 4.777 12 S 2.703 3.297 13 O -0.937 6.937 14 O -0.957 6.957 15 O -0.605 6.605 16 C 0.086 3.914 17 C -0.132 4.132 18 C 0.103 3.897 19 F -0.088 7.088 20 C 0.058 3.942 21 F -0.095 7.095 22 C -0.064 4.064 23 C -0.184 4.184 24 C 0.225 3.775 25 O -0.325 6.325 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.025 0.975 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.184 0.816 33 H 0.207 0.793 34 H 0.203 0.797 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.471 -21.408 -4.509 21.883 hybrid contribution -0.164 1.216 -0.291 1.261 sum 0.306 -20.192 -4.801 20.757 Atomic orbital electron populations 1.70081 1.07648 1.27732 1.51532 1.25904 0.95714 1.03163 0.94732 0.85468 0.79246 0.79089 0.77689 1.18525 1.20605 1.20465 1.21761 0.93860 0.92312 1.50696 0.91782 1.18990 0.94071 0.91864 0.96101 1.21296 0.98513 0.90812 1.03200 1.31218 1.17575 1.15798 1.13101 1.05261 0.75510 0.74887 0.74058 1.93629 1.69573 1.84775 1.45745 1.93629 1.71549 1.84393 1.46087 1.85717 1.72058 1.63115 1.39657 1.17796 0.91969 1.00092 0.81536 1.21292 1.02879 0.98403 0.90618 1.17473 0.90264 0.93784 0.88186 1.91619 1.80690 1.70926 1.65604 1.17582 0.91920 1.00864 0.83820 1.91609 1.83960 1.92018 1.41865 1.21359 1.01488 0.93793 0.89712 1.21079 0.95073 1.04054 0.98187 1.24570 0.85700 0.75507 0.91674 1.90627 1.20849 1.41976 1.79022 0.92765 0.98078 0.97521 0.90257 0.90651 0.84381 0.81569 0.79277 0.79725 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.55 -29.72 9.11 25.60 0.23 -29.49 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.35 4.97 29.84 0.15 1.50 16 10 C -0.10 -3.55 5.16 30.59 0.16 -3.39 16 11 C -0.65 -16.62 3.99 71.98 0.29 -16.33 16 12 S 2.61 63.03 5.16 -56.49 -0.29 62.74 16 13 O -0.94 -28.07 18.09 -118.57 -2.15 -30.21 16 14 O -0.96 -26.07 16.26 -118.57 -1.93 -28.00 16 15 O -0.65 -12.25 9.35 -58.62 -0.55 -12.80 16 16 C 0.13 2.33 4.82 22.89 0.11 2.44 16 17 C -0.11 -1.80 9.00 22.37 0.20 -1.60 16 18 C 0.12 2.03 7.31 22.50 0.16 2.20 16 19 F -0.11 -1.90 17.17 44.97 0.77 -1.12 16 20 C 0.08 1.30 7.29 22.36 0.16 1.47 16 21 F -0.12 -2.06 17.17 44.97 0.77 -1.28 16 22 C -0.04 -0.72 9.56 22.61 0.22 -0.50 16 23 C -0.18 -3.21 5.30 -20.08 -0.11 -3.31 16 24 C 0.37 7.29 8.36 70.01 0.59 7.87 16 25 O -0.45 -11.99 17.16 -3.14 -0.05 -12.04 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.14 3.21 5.65 -2.39 -0.01 3.19 16 32 H 0.17 3.37 6.75 -2.39 -0.02 3.35 16 33 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 34 H 0.19 2.58 7.65 -2.91 -0.02 2.56 16 35 H 0.14 2.08 5.06 -2.91 -0.01 2.06 16 Total: -1.00 -70.72 326.62 2.67 -68.05 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.16 Total: 2.53 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 2.62 Total: -38.52 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.28 Total: -54.47 kcal Atomic # 8 Polarization: -78.37 SS G_CDS: -4.68 Total: -83.05 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.54 Total: -2.41 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 63.03 SS G_CDS: -0.29 Total: 62.74 kcal Total: -70.72 2.67 -68.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196245827.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.093 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds