Wall clock time and date at job start Tue Mar 31 2020 17:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46970 * 2 1 4 4 C 1.46502 * 120.00012 * 275.00106 * 3 2 1 5 5 C 1.50689 * 109.47312 * 275.00079 * 4 3 2 6 6 H 1.08003 * 120.00153 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00375 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99477 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00433 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46827 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46749 * 120.00099 * 9 7 5 12 12 H 1.48500 * 109.47267 * 240.00169 * 9 7 5 13 13 S 1.65598 * 119.99810 * 95.00201 * 3 2 1 14 14 O 1.42101 * 106.40288 * 336.46306 * 13 3 2 15 15 O 1.42098 * 106.40155 * 203.53732 * 13 3 2 16 16 C 1.76202 * 107.21615 * 89.99997 * 13 3 2 17 17 C 1.38464 * 120.42572 * 114.99834 * 16 13 3 18 18 C 1.38718 * 118.49967 * 179.97438 * 17 16 13 19 19 C 1.38265 * 119.27715 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 119.60263 * 179.97438 * 19 18 17 21 21 N 1.32024 * 120.79821 * 359.97438 * 19 18 17 22 22 C 1.32292 * 121.63324 * 0.02582 * 21 19 18 23 23 O 1.35676 * 119.68109 * 179.97438 * 22 21 19 24 24 C 1.42905 * 116.99822 * 359.97438 * 23 22 21 25 25 H 1.08991 * 109.47123 * 59.99584 * 1 2 3 26 26 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46529 * 299.99278 * 1 2 3 28 28 H 1.09000 * 109.46934 * 240.00122 * 2 1 3 29 29 H 1.08997 * 109.47788 * 120.00340 * 2 1 3 30 30 H 1.08997 * 109.46921 * 35.00719 * 4 3 2 31 31 H 1.09004 * 109.46872 * 154.99839 * 4 3 2 32 32 H 0.97002 * 120.00222 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.75243 * 359.95900 * 17 16 13 34 34 H 1.08003 * 120.36768 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47052 * 60.00347 * 24 23 22 36 36 H 1.08992 * 109.47418 * 180.02562 * 24 23 22 37 37 H 1.09004 * 109.46917 * 300.00653 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4946 1.7889 -1.8824 6 1 4.1723 1.1118 -1.3836 7 6 3.8524 2.3607 -3.0849 8 7 3.0273 3.1856 -3.6920 9 14 5.5093 1.9648 -3.8512 10 1 6.2457 1.0177 -2.9761 11 1 5.3025 1.3467 -5.1855 12 1 6.2966 3.2150 -4.0015 13 16 2.4122 2.1202 1.4287 14 8 1.6870 1.4414 2.4448 15 8 2.3057 3.5186 1.1999 16 6 4.1170 1.7940 1.7319 17 6 5.0377 2.8282 1.7424 18 6 6.3696 2.5262 1.9858 19 6 6.7350 1.2114 2.2084 20 17 8.3995 0.8239 2.5131 21 7 5.8334 0.2471 2.1919 22 6 4.5545 0.4968 1.9633 23 8 3.6616 -0.5247 1.9549 24 6 4.1740 -1.8362 2.1991 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 1.3616 1.8098 -1.9452 31 1 2.0921 3.1803 -1.0755 32 1 3.2791 3.5882 -4.5378 33 1 4.7261 3.8468 1.5649 34 1 7.1130 3.3094 2.0013 35 1 4.6434 -1.8656 3.1825 36 1 3.3576 -2.5575 2.1642 37 1 4.9119 -2.0858 1.4367 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198678369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:40 Heat of formation + Delta-G solvation = -75.872716 kcal Electronic energy + Delta-G solvation = -25914.455049 eV Core-core repulsion = 22038.790971 eV Total energy + Delta-G solvation = -3875.664079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.059 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.76660 -38.25675 -36.80930 -36.57773 -36.02804 -35.27376 -32.78150 -32.72870 -30.85959 -29.92520 -27.40346 -26.63795 -24.13252 -23.31984 -23.08901 -21.67402 -18.93731 -18.49758 -17.70405 -16.99244 -16.88999 -16.32601 -16.09957 -15.68411 -15.33462 -14.60849 -14.49114 -14.12312 -13.98654 -13.61810 -13.31624 -13.16601 -12.87626 -12.18940 -12.07635 -11.99514 -11.95218 -11.68528 -11.58169 -11.46728 -11.36751 -11.11596 -11.08889 -11.02239 -10.95742 -10.48104 -10.38037 -10.18958 -10.03392 -9.87033 -9.77379 -8.80679 -8.53058 -8.06606 -6.14828 -4.21172 0.46706 1.03342 1.12614 1.50419 2.85193 3.20585 3.27142 3.29495 3.32662 3.64089 4.23076 4.26482 4.33579 4.52837 4.84513 5.13205 5.19000 5.20182 5.25774 5.27080 5.51805 5.58406 5.60194 5.72654 5.84482 5.89157 6.12749 6.17542 6.36548 6.69744 6.72675 6.89784 7.32022 7.35239 7.40355 7.61864 7.82328 8.11392 8.83477 9.45174 10.93039 Molecular weight = 334.06amu Principal moments of inertia in cm(-1) A = 0.009317 B = 0.006824 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.662255 B = 4101.940967 C = 5644.225396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.124 3.876 3 N -0.973 5.973 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.281 1.281 13 S 2.700 3.300 14 O -0.962 6.962 15 O -0.956 6.956 16 C -0.731 4.731 17 C 0.076 3.924 18 C -0.212 4.212 19 C 0.257 3.743 20 Cl -0.025 7.025 21 N -0.550 5.550 22 C 0.432 3.568 23 O -0.290 6.290 24 C 0.036 3.964 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.264 0.736 33 H 0.172 0.828 34 H 0.156 0.844 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -6.053 11.272 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.813 5.813 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.207 1.207 13 S 2.784 3.216 14 O -0.952 6.952 15 O -0.947 6.947 16 C -0.816 4.816 17 C 0.050 3.950 18 C -0.235 4.235 19 C 0.093 3.907 20 Cl 0.003 6.997 21 N -0.277 5.277 22 C 0.252 3.748 23 O -0.195 6.195 24 C -0.058 4.058 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.879 -6.397 11.762 13.940 hybrid contribution 2.011 -0.031 -0.932 2.217 sum 5.890 -6.428 10.829 13.903 Atomic orbital electron populations 1.22210 0.96811 1.01419 1.02407 1.21203 0.93559 0.82483 1.02962 1.57344 1.77275 1.23443 1.23248 1.19278 0.97400 0.92413 0.78815 1.21553 1.02245 1.27995 1.06124 0.92362 1.24908 0.97081 0.94805 0.96833 1.69933 1.35801 1.29765 1.17054 0.86594 0.84125 0.78351 0.79335 1.19877 1.20778 1.20708 1.01905 0.72976 0.73573 0.73098 1.93539 1.68856 1.75642 1.57156 1.93545 1.85619 1.29965 1.85545 1.31389 1.30561 0.97256 1.22385 1.21301 0.90671 0.99429 0.83606 1.21750 0.97938 0.95678 1.08093 1.21443 0.87098 0.89418 0.92732 1.98415 1.12679 1.95269 1.93300 1.66515 1.01370 1.37118 1.22685 1.18675 0.84967 0.86212 0.84969 1.86349 1.32594 1.16463 1.84139 1.23017 1.01073 0.79658 1.02101 0.92122 0.92306 0.92514 0.90396 0.90268 0.93772 0.92843 0.92584 0.81107 0.82652 0.91853 0.87712 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.12 2.16 5.87 -4.04 -0.02 2.14 16 3 N -0.97 -19.99 2.77 -115.66 -0.32 -20.31 16 4 C 0.24 5.88 5.43 -5.20 -0.03 5.86 16 5 C -0.54 -14.07 9.38 -34.44 -0.32 -14.39 16 6 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 7 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 S 2.70 53.97 5.25 -107.50 -0.56 53.40 16 14 O -0.96 -19.47 16.29 -62.35 -1.02 -20.49 16 15 O -0.96 -20.99 15.60 -57.17 -0.89 -21.88 16 16 C -0.73 -13.39 5.94 -39.27 -0.23 -13.62 16 17 C 0.08 1.23 9.66 -39.32 -0.38 0.85 16 18 C -0.21 -3.01 9.87 -39.39 -0.39 -3.40 16 19 C 0.26 3.87 7.27 -17.46 -0.13 3.75 16 20 Cl -0.03 -0.31 29.11 -51.86 -1.51 -1.82 16 21 N -0.55 -9.07 9.19 -10.44 -0.10 -9.16 16 22 C 0.43 7.59 7.44 -17.13 -0.13 7.46 16 23 O -0.29 -4.65 6.52 -27.95 -0.18 -4.84 16 24 C 0.04 0.42 10.38 101.05 1.05 1.47 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 29 H 0.08 1.28 4.89 -51.93 -0.25 1.03 16 30 H 0.04 1.10 8.11 -51.93 -0.42 0.68 16 31 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.17 2.47 7.43 -52.49 -0.39 2.08 16 34 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -31.46 344.23 -8.32 -39.78 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.35 Total: -1.02 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.30 Total: -10.42 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.32 Total: -53.67 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.09 Total: -47.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 53.97 SS G_CDS: -0.56 Total: 53.40 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.46 -8.32 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198678369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.095 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds