Wall clock time and date at job start Tue Mar 31 2020 18:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47275 * 299.72050 * 3 2 1 5 5 N 1.46502 * 109.47160 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99902 * 275.00324 * 5 4 3 7 7 C 1.50701 * 109.46992 * 274.99572 * 6 5 4 8 8 H 1.07997 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00214 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99618 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00357 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47056 * 60.00038 * 11 9 7 13 13 H 1.48501 * 109.47460 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47249 * 300.00450 * 11 9 7 15 15 S 1.65598 * 119.99811 * 95.00128 * 5 4 3 16 16 O 1.42094 * 106.40656 * 336.46109 * 15 5 4 17 17 O 1.42101 * 106.40190 * 203.54032 * 15 5 4 18 18 C 1.76198 * 107.21880 * 90.00401 * 15 5 4 19 19 C 1.38738 * 119.79783 * 89.99522 * 18 15 5 20 20 C 1.37848 * 120.69043 * 180.02562 * 19 18 15 21 21 C 1.38937 * 119.81556 * 0.02562 * 20 19 18 22 22 O 1.34814 * 133.49351 * 180.02562 * 21 20 19 23 23 C 1.34443 * 110.88753 * 179.97438 * 22 21 20 24 24 C 1.33998 * 110.15778 * 0.02562 * 23 22 21 25 25 C 1.40484 * 119.22530 * 359.97438 * 21 20 19 26 26 C 1.36748 * 119.78950 * 270.01968 * 18 15 5 27 27 H 1.09000 * 109.46908 * 179.71812 * 3 2 1 28 28 H 1.09001 * 109.46967 * 59.72801 * 3 2 1 29 29 H 1.09000 * 109.47347 * 60.00031 * 4 3 2 30 30 H 1.09001 * 109.47737 * 300.00280 * 4 3 2 31 31 H 1.08997 * 109.47124 * 34.99836 * 6 5 4 32 32 H 1.09003 * 109.47140 * 155.00196 * 6 5 4 33 33 H 0.96993 * 119.99626 * 180.02562 * 10 9 7 34 34 H 1.08003 * 119.65307 * 359.97438 * 19 18 15 35 35 H 1.08000 * 120.09001 * 179.97438 * 20 19 18 36 36 H 1.07999 * 124.92514 * 179.97438 * 23 22 21 37 37 H 1.08001 * 126.91274 * 179.97438 * 24 23 22 38 38 H 1.07996 * 120.14000 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7142 1.2527 5 7 4.5833 -0.7141 1.2523 6 6 5.3158 -1.7569 0.5296 7 6 5.4601 -2.9714 1.4101 8 1 5.0471 -2.9671 2.4080 9 6 6.1184 -4.0885 0.9413 10 7 6.6208 -4.0940 -0.2741 11 14 6.2966 -5.5942 2.0324 12 1 4.9501 -6.1000 2.4019 13 1 7.0391 -6.6513 1.2999 14 1 7.0427 -5.2282 3.2631 15 16 5.4114 0.4649 2.0688 16 8 4.5297 1.5741 2.1753 17 8 6.6942 0.5471 1.4631 18 6 5.6727 -0.1222 3.7094 19 6 6.8175 -0.8467 4.0083 20 6 7.0403 -1.3153 5.2854 21 6 6.1105 -1.0617 6.2862 22 8 6.0470 -1.3775 7.5953 23 6 4.9222 -0.8942 8.1509 24 6 4.1974 -0.2408 7.2326 25 6 4.9533 -0.3276 5.9774 26 6 4.7455 0.1386 4.6801 27 1 2.9708 1.0285 -0.0051 28 1 2.9715 -0.5172 -0.8875 29 1 2.7555 -1.7420 1.2577 30 1 2.7548 -0.1963 2.1402 31 1 4.7682 -2.0259 -0.3736 32 1 6.3040 -1.3853 0.2584 33 1 7.0835 -4.8800 -0.6040 34 1 7.5414 -1.0464 3.2320 35 1 7.9346 -1.8786 5.5072 36 1 4.6427 -1.0157 9.1871 37 1 3.2482 0.2512 7.3854 38 1 3.8559 0.7030 4.4426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198849858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:34 Heat of formation + Delta-G solvation = -12.915679 kcal Electronic energy + Delta-G solvation = -26441.600452 eV Core-core repulsion = 22571.099245 eV Total energy + Delta-G solvation = -3870.501207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.51356 -37.88240 -37.21082 -36.77996 -35.72834 -35.38775 -32.88460 -32.84295 -30.76310 -30.62696 -29.34779 -27.02444 -23.87244 -23.74753 -22.60140 -22.14721 -21.41251 -18.76960 -17.66310 -17.58413 -17.45614 -16.81506 -16.62162 -16.38404 -16.17433 -15.55988 -14.73644 -14.64799 -14.24876 -14.17156 -13.87186 -13.52707 -13.26772 -13.18830 -12.75628 -12.68814 -12.63867 -12.35949 -12.32082 -12.01483 -11.75460 -11.63342 -11.46093 -11.21358 -11.14378 -11.04419 -10.73487 -10.64425 -10.52803 -10.28858 -10.14238 -9.92380 -8.96002 -8.56983 -8.29734 -8.27379 -6.19717 -4.26369 0.75645 0.93465 1.10388 2.29123 2.67668 2.88177 2.95528 3.21852 3.27814 3.28568 3.33495 3.64991 4.10605 4.30301 4.31213 4.32468 4.57102 4.80250 4.99600 5.08914 5.15818 5.17766 5.27497 5.32592 5.34886 5.53089 5.63202 5.72618 5.82528 6.00243 6.12640 6.15194 6.21594 6.27322 6.34921 6.59589 7.06090 7.12863 7.28017 7.42922 7.71152 7.76815 8.03511 8.78651 9.40956 10.88134 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.005952 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.184170 B = 4703.397253 C = 6536.794246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.222 3.778 3 C -0.053 4.053 4 C 0.137 3.863 5 N -0.979 5.979 6 C 0.241 3.759 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.275 1.275 15 S 2.693 3.307 16 O -0.974 6.974 17 O -0.950 6.950 18 C -0.677 4.677 19 C 0.020 3.980 20 C -0.128 4.128 21 C 0.095 3.905 22 O -0.196 6.196 23 C -0.005 4.005 24 C -0.198 4.198 25 C -0.163 4.163 26 C 0.034 3.966 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.266 0.734 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.208 0.792 37 H 0.160 0.840 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 6.856 10.933 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.095 4.095 4 C 0.009 3.991 5 N -0.817 5.817 6 C 0.119 3.881 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.134 4.134 10 N -0.525 5.525 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.200 1.200 15 S 2.782 3.218 16 O -0.964 6.964 17 O -0.940 6.940 18 C -0.762 4.762 19 C 0.001 3.999 20 C -0.147 4.147 21 C 0.047 3.953 22 O -0.097 6.097 23 C -0.069 4.069 24 C -0.217 4.217 25 C -0.164 4.164 26 C 0.014 3.986 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.224 0.776 37 H 0.178 0.822 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.048 7.360 10.598 13.258 hybrid contribution 0.322 -1.583 1.308 2.078 sum -2.726 5.777 11.907 13.512 Atomic orbital electron populations 1.81179 1.13079 1.09537 1.09054 1.29093 0.95091 0.92555 0.92831 1.19904 0.81375 1.05027 1.03183 1.20926 0.80522 1.02304 0.95395 1.57447 1.12957 1.46673 1.64642 1.19374 0.92519 0.84046 0.92130 1.21493 1.37033 0.98850 1.01067 0.91917 1.24884 0.95081 0.98485 0.94979 1.69900 1.36500 1.30072 1.15992 0.86708 0.78404 0.82558 0.80728 1.20230 1.21136 1.20021 1.01938 0.73544 0.73065 0.73244 1.93528 1.66438 1.49276 1.87206 1.93571 1.40077 1.85874 1.74494 1.30864 1.03899 1.16748 1.24713 1.20747 0.94455 0.89155 0.95503 1.20042 0.99512 1.04861 0.90322 1.19886 0.96445 0.96314 0.82638 1.84030 1.39741 1.64912 1.21008 1.23931 0.85269 0.98417 0.99263 1.22543 1.02145 1.05820 0.91159 1.19965 0.96611 1.04631 0.95236 1.20007 0.96555 0.92191 0.89805 0.86930 0.86276 0.88659 0.90603 0.93575 0.92380 0.92412 0.82457 0.84318 0.77559 0.82241 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.21 18.54 42.15 0.78 -6.43 16 2 C 0.22 3.03 15.43 -20.76 -0.32 2.71 16 3 C -0.05 -0.64 6.02 -29.52 -0.18 -0.82 16 4 C 0.14 1.92 5.30 -4.05 -0.02 1.90 16 5 N -0.98 -16.74 2.77 -115.67 -0.32 -17.06 16 6 C 0.24 5.09 5.43 -5.19 -0.03 5.07 16 7 C -0.55 -12.89 9.38 -34.44 -0.32 -13.21 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -23.48 13.29 55.43 0.74 -22.74 16 11 Si 0.89 19.81 29.54 -169.99 -5.02 14.78 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 S 2.69 46.29 5.64 -107.50 -0.61 45.68 16 16 O -0.97 -16.54 16.22 -57.17 -0.93 -17.47 16 17 O -0.95 -18.97 15.81 -57.17 -0.90 -19.87 16 18 C -0.68 -11.18 5.94 -39.94 -0.24 -11.42 16 19 C 0.02 0.34 9.49 -39.54 -0.38 -0.04 16 20 C -0.13 -1.97 10.07 -39.47 -0.40 -2.37 16 21 C 0.10 1.45 7.42 -38.48 -0.29 1.17 16 22 O -0.20 -2.64 10.58 3.91 0.04 -2.60 16 23 C 0.00 -0.05 11.96 29.24 0.35 0.30 16 24 C -0.20 -2.22 11.14 -37.62 -0.42 -2.64 16 25 C -0.16 -2.39 6.40 -105.16 -0.67 -3.06 16 26 C 0.03 0.51 9.51 -39.69 -0.38 0.13 16 27 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.08 0.94 7.61 -51.93 -0.40 0.54 16 31 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.06 1.35 6.91 -51.93 -0.36 0.99 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.16 2.61 7.59 -52.48 -0.40 2.21 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.14 1.81 7.58 -52.49 -0.40 1.41 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -31.27 355.14 -8.30 -39.57 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.05 Total: 1.39 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.38 Total: -20.62 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 1.20 Total: -46.23 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.79 Total: -39.94 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.61 Total: 45.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.27 -8.30 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198849858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.654 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds