Wall clock time and date at job start Tue Mar 31 2020 18:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47275 * 299.72050 * 3 2 1 5 5 N 1.46502 * 109.47160 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99902 * 275.00324 * 5 4 3 7 7 C 1.50701 * 109.46992 * 274.99572 * 6 5 4 8 8 H 1.07997 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00214 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99618 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00357 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47056 * 60.00038 * 11 9 7 13 13 H 1.48501 * 109.47460 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47249 * 300.00450 * 11 9 7 15 15 S 1.65598 * 119.99811 * 95.00128 * 5 4 3 16 16 O 1.42094 * 106.40656 * 336.46109 * 15 5 4 17 17 O 1.42101 * 106.40190 * 203.54032 * 15 5 4 18 18 C 1.76198 * 107.21880 * 90.00401 * 15 5 4 19 19 C 1.38738 * 119.79783 * 89.99522 * 18 15 5 20 20 C 1.37848 * 120.69043 * 180.02562 * 19 18 15 21 21 C 1.38937 * 119.81556 * 0.02562 * 20 19 18 22 22 O 1.34814 * 133.49351 * 180.02562 * 21 20 19 23 23 C 1.34443 * 110.88753 * 179.97438 * 22 21 20 24 24 C 1.33998 * 110.15778 * 0.02562 * 23 22 21 25 25 C 1.40484 * 119.22530 * 359.97438 * 21 20 19 26 26 C 1.36748 * 119.78950 * 270.01968 * 18 15 5 27 27 H 1.09000 * 109.46908 * 179.71812 * 3 2 1 28 28 H 1.09001 * 109.46967 * 59.72801 * 3 2 1 29 29 H 1.09000 * 109.47347 * 60.00031 * 4 3 2 30 30 H 1.09001 * 109.47737 * 300.00280 * 4 3 2 31 31 H 1.08997 * 109.47124 * 34.99836 * 6 5 4 32 32 H 1.09003 * 109.47140 * 155.00196 * 6 5 4 33 33 H 0.96993 * 119.99626 * 180.02562 * 10 9 7 34 34 H 1.08003 * 119.65307 * 359.97438 * 19 18 15 35 35 H 1.08000 * 120.09001 * 179.97438 * 20 19 18 36 36 H 1.07999 * 124.92514 * 179.97438 * 23 22 21 37 37 H 1.08001 * 126.91274 * 179.97438 * 24 23 22 38 38 H 1.07996 * 120.14000 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7142 1.2527 5 7 4.5833 -0.7141 1.2523 6 6 5.3158 -1.7569 0.5296 7 6 5.4601 -2.9714 1.4101 8 1 5.0471 -2.9671 2.4080 9 6 6.1184 -4.0885 0.9413 10 7 6.6208 -4.0940 -0.2741 11 14 6.2966 -5.5942 2.0324 12 1 4.9501 -6.1000 2.4019 13 1 7.0391 -6.6513 1.2999 14 1 7.0427 -5.2282 3.2631 15 16 5.4114 0.4649 2.0688 16 8 4.5297 1.5741 2.1753 17 8 6.6942 0.5471 1.4631 18 6 5.6727 -0.1222 3.7094 19 6 6.8175 -0.8467 4.0083 20 6 7.0403 -1.3153 5.2854 21 6 6.1105 -1.0617 6.2862 22 8 6.0470 -1.3775 7.5953 23 6 4.9222 -0.8942 8.1509 24 6 4.1974 -0.2408 7.2326 25 6 4.9533 -0.3276 5.9774 26 6 4.7455 0.1386 4.6801 27 1 2.9708 1.0285 -0.0051 28 1 2.9715 -0.5172 -0.8875 29 1 2.7555 -1.7420 1.2577 30 1 2.7548 -0.1963 2.1402 31 1 4.7682 -2.0259 -0.3736 32 1 6.3040 -1.3853 0.2584 33 1 7.0835 -4.8800 -0.6040 34 1 7.5414 -1.0464 3.2320 35 1 7.9346 -1.8786 5.5072 36 1 4.6427 -1.0157 9.1871 37 1 3.2482 0.2512 7.3854 38 1 3.8559 0.7030 4.4426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198849858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:33 Heat of formation + Delta-G solvation = -32.102861 kcal Electronic energy + Delta-G solvation = -26442.432471 eV Core-core repulsion = 22571.099245 eV Total energy + Delta-G solvation = -3871.333226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.51054 -39.01381 -38.47049 -38.18503 -37.05970 -36.82878 -34.64179 -33.86222 -32.07266 -31.79624 -30.36998 -28.70735 -25.33054 -24.85967 -23.79612 -23.59121 -22.36769 -20.05922 -18.90666 -18.82921 -18.56967 -18.22861 -18.04088 -17.67509 -17.18609 -16.99447 -16.31015 -15.86607 -15.43180 -15.30311 -15.17325 -14.85483 -14.42905 -14.28346 -14.15650 -13.97365 -13.69734 -13.62496 -13.57027 -13.44589 -13.14745 -13.07019 -12.91076 -12.83374 -12.64612 -12.30172 -12.25809 -12.07895 -11.99012 -11.67258 -11.55185 -11.27559 -10.49786 -10.13450 -9.79019 -9.29008 -8.11138 -6.21045 -0.53944 -0.21386 -0.07846 1.38127 1.44289 1.46868 1.52117 1.72019 1.75315 1.85773 2.03042 2.41233 2.48292 2.81919 3.13830 3.22815 3.25954 3.52867 3.66625 3.96012 4.02728 4.14573 4.17449 4.18920 4.34054 4.54635 4.59788 4.62015 4.80726 4.90910 5.00066 5.03820 5.07339 5.15054 5.40634 5.43956 5.47656 5.56212 5.81096 5.93234 6.04083 6.18843 6.61961 6.90778 7.48344 8.96214 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.005952 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.184170 B = 4703.397253 C = 6536.794246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.247 3.753 3 C -0.047 4.047 4 C 0.127 3.873 5 N -0.978 5.978 6 C 0.254 3.746 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.023 3.977 10 N -0.920 5.920 11 Si 0.937 3.063 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.271 1.271 15 S 2.706 3.294 16 O -0.971 6.971 17 O -0.984 6.984 18 C -0.688 4.688 19 C -0.006 4.006 20 C -0.132 4.132 21 C 0.075 3.925 22 O -0.204 6.204 23 C 0.011 3.989 24 C -0.209 4.209 25 C -0.174 4.174 26 C 0.029 3.971 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.259 0.741 37 H 0.191 0.809 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 7.091 13.421 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.070 4.070 3 C -0.089 4.089 4 C 0.000 4.000 5 N -0.815 5.815 6 C 0.131 3.869 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.177 4.177 10 N -0.560 5.560 11 Si 0.763 3.237 12 H -0.198 1.198 13 H -0.214 1.214 14 H -0.197 1.197 15 S 2.797 3.203 16 O -0.961 6.961 17 O -0.974 6.974 18 C -0.775 4.775 19 C -0.025 4.025 20 C -0.151 4.151 21 C 0.027 3.973 22 O -0.106 6.106 23 C -0.053 4.053 24 C -0.227 4.227 25 C -0.176 4.176 26 C 0.009 3.991 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.274 0.726 37 H 0.208 0.792 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.459 7.614 13.084 15.781 hybrid contribution 0.728 -1.607 0.703 1.899 sum -3.730 6.007 13.788 15.495 Atomic orbital electron populations 1.81210 1.14260 1.11003 1.10379 1.29169 0.94991 0.91245 0.91583 1.19925 0.80284 1.05892 1.02758 1.21169 0.78598 1.02983 0.97275 1.57248 1.14183 1.45494 1.64602 1.18961 0.91858 0.84099 0.92027 1.21799 1.35571 0.99291 1.01185 0.91737 1.25517 0.95382 1.00899 0.95889 1.69997 1.37954 1.30649 1.17422 0.85934 0.78334 0.80003 0.79413 1.19835 1.21365 1.19659 1.01373 0.72727 0.72919 0.73276 1.93519 1.66141 1.49113 1.87351 1.93527 1.41849 1.86407 1.75634 1.30651 1.04672 1.17796 1.24345 1.20725 0.94899 0.90843 0.96082 1.20195 1.00266 1.04571 0.90102 1.20022 0.96805 0.96977 0.83523 1.84049 1.41306 1.65090 1.20107 1.24984 0.83276 0.96040 1.00949 1.22941 1.03450 1.06826 0.89514 1.20417 0.97038 1.03884 0.96225 1.20264 0.96788 0.92170 0.89849 0.85386 0.85081 0.88809 0.88521 0.93774 0.94842 0.92652 0.83699 0.82862 0.72580 0.79216 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.11 18.54 20.01 0.37 -14.74 16 2 C 0.25 6.34 15.43 89.44 1.38 7.72 16 3 C -0.05 -1.05 6.02 28.79 0.17 -0.87 16 4 C 0.13 3.38 5.30 86.38 0.46 3.83 16 5 N -0.98 -33.02 2.77 -519.86 -1.44 -34.46 16 6 C 0.25 10.87 5.43 85.63 0.47 11.33 16 7 C -0.54 -25.61 9.38 25.60 0.24 -25.37 16 8 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.02 1.18 5.46 84.65 0.46 1.64 16 10 N -0.92 -49.57 13.29 21.45 0.28 -49.29 16 11 Si 0.94 40.59 29.54 68.60 2.03 42.61 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 S 2.71 92.74 5.64 -56.49 -0.32 92.42 16 16 O -0.97 -31.72 16.22 -128.00 -2.08 -33.79 16 17 O -0.98 -40.48 15.81 -128.00 -2.02 -42.50 16 18 C -0.69 -22.60 5.94 22.04 0.13 -22.47 16 19 C -0.01 -0.21 9.49 22.30 0.21 0.00 16 20 C -0.13 -4.05 10.07 22.34 0.23 -3.83 16 21 C 0.08 2.19 7.42 22.99 0.17 2.36 16 22 O -0.20 -4.98 10.58 -8.93 -0.09 -5.08 16 23 C 0.01 0.17 11.96 66.85 0.80 0.97 16 24 C -0.21 -3.91 11.14 23.54 0.26 -3.64 16 25 C -0.17 -4.75 6.40 -20.21 -0.13 -4.88 16 26 C 0.03 0.82 9.51 22.20 0.21 1.03 16 27 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.09 2.54 8.11 -2.39 -0.02 2.52 16 30 H 0.10 2.17 7.61 -2.39 -0.02 2.15 16 31 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 32 H 0.03 1.62 6.91 -2.39 -0.02 1.60 16 33 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 34 H 0.15 5.13 7.59 -2.91 -0.02 5.10 16 35 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.26 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.16 3.78 7.58 -2.91 -0.02 3.75 16 Total: -1.00 -67.82 355.14 2.89 -64.93 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.10 Total: 12.06 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 5.06 Total: -32.17 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -0.78 Total: -98.48 kcal Atomic # 8 Polarization: -77.18 SS G_CDS: -4.19 Total: -81.37 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 92.74 SS G_CDS: -0.32 Total: 92.42 kcal Total: -67.82 2.89 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198849858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.823 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds