Wall clock time and date at job start Tue Mar 31 2020 17:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00327 * 262.89644 * 3 2 1 5 5 N 3.51034 * 140.68813 * 262.89959 * 2 1 3 6 6 C 1.41099 * 119.99970 * 82.89437 * 3 2 1 7 7 C 1.38879 * 119.99618 * 5.36171 * 6 3 2 8 8 H 1.07992 * 119.99948 * 30.46534 * 7 6 3 9 9 C 1.40909 * 119.99717 * 210.46340 * 7 6 3 10 10 N 1.30308 * 119.99608 * 6.46519 * 9 7 6 11 11 Si 1.86798 * 119.99978 * 186.46269 * 9 7 6 12 12 H 1.48501 * 109.46975 * 90.00031 * 11 9 7 13 13 H 1.48500 * 109.46975 * 209.99910 * 11 9 7 14 14 H 1.48501 * 109.47050 * 330.00404 * 11 9 7 15 15 N 1.38637 * 119.99857 * 185.35798 * 6 3 2 16 16 C 1.34774 * 119.99674 * 241.80050 * 15 6 3 17 17 S 1.71196 * 120.00279 * 5.50204 * 16 15 6 18 18 N 1.34778 * 119.99333 * 185.50486 * 16 15 6 19 19 C 1.39874 * 119.99790 * 184.85217 * 18 16 15 20 20 C 1.38863 * 120.04515 * 42.78343 * 19 18 16 21 21 C 1.38340 * 119.95097 * 179.97438 * 20 19 18 22 22 F 1.35103 * 119.97666 * 179.97438 * 21 20 19 23 23 C 1.38475 * 120.04953 * 0.02562 * 21 20 19 24 24 C 1.38475 * 120.08981 * 0.02562 * 23 21 20 25 25 F 1.35102 * 119.97509 * 179.97438 * 24 23 21 26 26 C 1.38341 * 120.04573 * 0.02562 * 24 23 21 27 27 H 0.97000 * 119.99115 * 184.99750 * 10 9 7 28 28 H 0.97002 * 119.99949 * 61.80913 * 15 6 3 29 29 H 0.96998 * 120.00485 * 4.84377 * 18 16 15 30 30 H 1.07999 * 120.02315 * 359.71457 * 20 19 18 31 31 H 1.07995 * 119.95582 * 179.97438 * 23 21 20 32 32 H 1.08007 * 120.02016 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2840 0.1543 1.2306 5 7 3.8520 0.2749 2.2069 6 6 3.2735 -0.1502 -1.2126 7 6 2.5836 -0.1874 -2.4173 8 1 1.6570 0.3564 -2.5259 9 6 3.0928 -0.9347 -3.4979 10 7 4.1409 -1.6907 -3.3307 11 14 2.2654 -0.8417 -5.1701 12 1 2.8754 0.2552 -5.9638 13 1 2.4476 -2.1305 -5.8849 14 1 0.8155 -0.5756 -4.9907 15 7 4.6554 -0.2612 -1.2013 16 6 5.4108 0.6646 -1.8247 17 16 4.6749 2.0506 -2.5090 18 7 6.7457 0.4991 -1.9095 19 6 7.5413 1.5061 -2.4658 20 6 7.3063 2.8360 -2.1426 21 6 8.0947 3.8304 -2.6934 22 9 7.8662 5.1245 -2.3798 23 6 9.1173 3.5004 -3.5669 24 6 9.3526 2.1749 -3.8913 25 9 10.3506 1.8556 -4.7442 26 6 8.5659 1.1775 -3.3435 27 1 4.5349 -2.1482 -4.0899 28 1 5.0785 -1.0051 -0.7448 29 1 7.1548 -0.3183 -1.5847 30 1 6.5059 3.0941 -1.4650 31 1 9.7316 4.2779 -3.9964 32 1 8.7495 0.1439 -3.5971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200677616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:14 Heat of formation + Delta-G solvation = 22.401141 kcal Electronic energy + Delta-G solvation = -24666.815406 eV Core-core repulsion = 20583.217792 eV Total energy + Delta-G solvation = -4083.597614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.039 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.09006 -48.90244 -40.12580 -38.58032 -36.35736 -35.29820 -34.86172 -33.80492 -31.17967 -30.45425 -29.36905 -27.33203 -24.77181 -23.17127 -22.40786 -21.90859 -19.72120 -18.67297 -18.57098 -17.51558 -17.01004 -16.61018 -16.49140 -16.20426 -15.98512 -15.63690 -15.29065 -15.21133 -15.16067 -14.31497 -14.06472 -13.62125 -13.02455 -12.78292 -12.66931 -12.44205 -12.15870 -12.02183 -11.96643 -11.90039 -11.75815 -11.74163 -11.62039 -11.14242 -11.08222 -10.79499 -10.68183 -10.18162 -9.95437 -8.89314 -8.76729 -8.27823 -7.77917 -7.28196 -6.68614 -5.45797 0.72721 0.96222 1.48833 2.12395 2.26751 2.68680 2.72468 2.75451 2.90857 3.33131 3.39453 3.61676 3.70073 3.90395 3.93296 4.12022 4.20613 4.32561 4.69801 4.76962 4.95404 4.99335 5.13269 5.36404 5.72849 5.75807 5.87824 6.02015 6.07470 6.10887 6.29579 6.47697 6.71319 6.91309 7.04119 7.36370 7.53355 7.68517 7.91792 8.74172 8.98649 9.01852 Molecular weight = 334.04amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004434 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.779492 B = 6312.760698 C = 7450.273071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.325 3.675 3 C -0.282 4.282 4 C 0.303 3.697 5 N -0.525 5.525 6 C 0.368 3.632 7 C -0.323 4.323 8 H 0.122 0.878 9 C 0.077 3.923 10 N -0.750 5.750 11 Si 0.930 3.070 12 H -0.250 1.250 13 H -0.270 1.270 14 H -0.246 1.246 15 N -0.591 5.591 16 C 0.579 3.421 17 S -0.601 6.601 18 N -0.643 5.643 19 C 0.209 3.791 20 C -0.118 4.118 21 C 0.137 3.863 22 F -0.128 7.128 23 C -0.194 4.194 24 C 0.132 3.868 25 F -0.133 7.133 26 C -0.175 4.175 27 H 0.304 0.696 28 H 0.399 0.601 29 H 0.410 0.590 30 H 0.165 0.835 31 H 0.146 0.854 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.281 -0.104 -6.688 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.016 3.984 3 C -0.300 4.300 4 C -0.004 4.004 5 N -0.207 5.207 6 C 0.266 3.734 7 C -0.351 4.351 8 H 0.139 0.861 9 C -0.152 4.152 10 N -0.370 5.370 11 Si 0.751 3.249 12 H -0.174 1.174 13 H -0.194 1.194 14 H -0.169 1.169 15 N -0.210 5.210 16 C 0.223 3.777 17 S -0.470 6.470 18 N -0.271 5.271 19 C 0.113 3.887 20 C -0.142 4.142 21 C 0.116 3.884 22 F -0.106 7.106 23 C -0.215 4.215 24 C 0.111 3.889 25 F -0.111 7.111 26 C -0.197 4.197 27 H 0.116 0.884 28 H 0.237 0.763 29 H 0.248 0.752 30 H 0.182 0.818 31 H 0.164 0.836 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.862 0.790 -5.714 13.190 hybrid contribution 0.994 -1.508 -0.627 1.912 sum 12.856 -0.718 -6.341 14.353 Atomic orbital electron populations 1.81077 1.12042 1.18301 1.08649 1.24469 0.91080 0.90552 0.92264 1.12709 0.83336 1.47942 0.86051 1.25255 0.92692 0.90471 0.92001 1.81091 1.09821 1.19083 1.10728 1.16512 0.77410 0.87778 0.91654 1.20145 1.06085 1.15860 0.92983 0.86053 1.26530 0.94264 0.91307 1.03052 1.69308 1.16066 1.15992 1.35616 0.85817 0.81622 0.79498 0.77979 1.17395 1.19415 1.16912 1.41880 1.06841 1.23996 1.48319 1.22128 0.82758 0.90963 0.81852 1.93305 1.75195 1.17906 1.60547 1.42015 1.03986 1.19870 1.61224 1.16517 0.90909 0.87389 0.93879 1.21473 0.99350 0.90800 1.02562 1.16834 0.95402 0.78752 0.97459 1.91538 1.93881 1.33801 1.91417 1.20963 1.01389 0.96206 1.02937 1.16686 0.88047 0.92079 0.92072 1.91521 1.58333 1.93444 1.67843 1.20779 0.99008 1.00371 0.99573 0.88390 0.76266 0.75171 0.81774 0.83595 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.00 18.54 41.84 0.78 -11.23 16 2 C 0.33 7.18 14.09 -22.47 -0.32 6.87 16 3 C -0.28 -5.84 5.88 -104.97 -0.62 -6.46 16 4 C 0.30 6.39 14.82 -22.48 -0.33 6.06 16 5 N -0.53 -11.49 18.54 41.84 0.78 -10.71 16 6 C 0.37 7.14 4.93 -83.46 -0.41 6.73 16 7 C -0.32 -6.44 6.79 -38.33 -0.26 -6.70 16 8 H 0.12 2.54 7.37 -52.49 -0.39 2.15 16 9 C 0.08 1.41 5.25 -17.19 -0.09 1.32 16 10 N -0.75 -12.85 11.74 55.60 0.65 -12.20 16 11 Si 0.93 15.13 29.58 -169.99 -5.03 10.10 16 12 H -0.25 -4.28 7.11 56.52 0.40 -3.88 16 13 H -0.27 -4.20 7.11 56.52 0.40 -3.79 16 14 H -0.25 -4.12 7.11 56.52 0.40 -3.72 16 15 N -0.59 -9.81 3.13 -11.16 -0.03 -9.84 16 16 C 0.58 9.54 7.02 -86.92 -0.61 8.93 16 17 S -0.60 -12.10 24.23 -107.50 -2.60 -14.70 16 18 N -0.64 -8.13 5.32 -11.42 -0.06 -8.19 16 19 C 0.21 2.65 5.89 -83.73 -0.49 2.16 16 20 C -0.12 -1.66 7.85 -39.31 -0.31 -1.97 16 21 C 0.14 1.78 7.29 -39.46 -0.29 1.49 16 22 F -0.13 -1.75 17.27 2.25 0.04 -1.71 16 23 C -0.19 -2.16 10.00 -39.41 -0.39 -2.55 16 24 C 0.13 1.47 7.29 -39.46 -0.29 1.18 16 25 F -0.13 -1.47 17.27 2.25 0.04 -1.43 16 26 C -0.17 -1.91 9.95 -39.31 -0.39 -2.30 16 27 H 0.30 4.77 8.29 -40.82 -0.34 4.43 16 28 H 0.40 5.71 8.85 -40.82 -0.36 5.35 16 29 H 0.41 3.83 8.85 -40.82 -0.36 3.47 16 30 H 0.16 2.64 6.31 -50.70 -0.32 2.32 16 31 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -25.44 329.77 -6.69 -32.12 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -1.41 Total: 8.08 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: -4.80 Total: 14.74 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 2.11 Total: -52.17 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 15.13 SS G_CDS: -5.03 Total: 10.10 kcal Atomic # 16 Polarization: -12.10 SS G_CDS: -2.60 Total: -14.70 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -25.44 -6.69 -32.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200677616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.525 kcal (2) G-P(sol) polarization free energy of solvation -25.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds