Wall clock time and date at job start Tue Mar 31 2020 17:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00327 * 262.89644 * 3 2 1 5 5 N 3.51034 * 140.68813 * 262.89959 * 2 1 3 6 6 C 1.41099 * 119.99970 * 82.89437 * 3 2 1 7 7 C 1.38879 * 119.99618 * 5.36171 * 6 3 2 8 8 H 1.07992 * 119.99948 * 30.46534 * 7 6 3 9 9 C 1.40909 * 119.99717 * 210.46340 * 7 6 3 10 10 N 1.30308 * 119.99608 * 6.46519 * 9 7 6 11 11 Si 1.86798 * 119.99978 * 186.46269 * 9 7 6 12 12 H 1.48501 * 109.46975 * 90.00031 * 11 9 7 13 13 H 1.48500 * 109.46975 * 209.99910 * 11 9 7 14 14 H 1.48501 * 109.47050 * 330.00404 * 11 9 7 15 15 N 1.38637 * 119.99857 * 185.35798 * 6 3 2 16 16 C 1.34774 * 119.99674 * 241.80050 * 15 6 3 17 17 S 1.71196 * 120.00279 * 5.50204 * 16 15 6 18 18 N 1.34778 * 119.99333 * 185.50486 * 16 15 6 19 19 C 1.39874 * 119.99790 * 184.85217 * 18 16 15 20 20 C 1.38863 * 120.04515 * 42.78343 * 19 18 16 21 21 C 1.38340 * 119.95097 * 179.97438 * 20 19 18 22 22 F 1.35103 * 119.97666 * 179.97438 * 21 20 19 23 23 C 1.38475 * 120.04953 * 0.02562 * 21 20 19 24 24 C 1.38475 * 120.08981 * 0.02562 * 23 21 20 25 25 F 1.35102 * 119.97509 * 179.97438 * 24 23 21 26 26 C 1.38341 * 120.04573 * 0.02562 * 24 23 21 27 27 H 0.97000 * 119.99115 * 184.99750 * 10 9 7 28 28 H 0.97002 * 119.99949 * 61.80913 * 15 6 3 29 29 H 0.96998 * 120.00485 * 4.84377 * 18 16 15 30 30 H 1.07999 * 120.02315 * 359.71457 * 20 19 18 31 31 H 1.07995 * 119.95582 * 179.97438 * 23 21 20 32 32 H 1.08007 * 120.02016 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2840 0.1543 1.2306 5 7 3.8520 0.2749 2.2069 6 6 3.2735 -0.1502 -1.2126 7 6 2.5836 -0.1874 -2.4173 8 1 1.6570 0.3564 -2.5259 9 6 3.0928 -0.9347 -3.4979 10 7 4.1409 -1.6907 -3.3307 11 14 2.2654 -0.8417 -5.1701 12 1 2.8754 0.2552 -5.9638 13 1 2.4476 -2.1305 -5.8849 14 1 0.8155 -0.5756 -4.9907 15 7 4.6554 -0.2612 -1.2013 16 6 5.4108 0.6646 -1.8247 17 16 4.6749 2.0506 -2.5090 18 7 6.7457 0.4991 -1.9095 19 6 7.5413 1.5061 -2.4658 20 6 7.3063 2.8360 -2.1426 21 6 8.0947 3.8304 -2.6934 22 9 7.8662 5.1245 -2.3798 23 6 9.1173 3.5004 -3.5669 24 6 9.3526 2.1749 -3.8913 25 9 10.3506 1.8556 -4.7442 26 6 8.5659 1.1775 -3.3435 27 1 4.5349 -2.1482 -4.0899 28 1 5.0785 -1.0051 -0.7448 29 1 7.1548 -0.3183 -1.5847 30 1 6.5059 3.0941 -1.4650 31 1 9.7316 4.2779 -3.9964 32 1 8.7495 0.1439 -3.5971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200677616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:14 Heat of formation + Delta-G solvation = 11.262405 kcal Electronic energy + Delta-G solvation = -24667.298418 eV Core-core repulsion = 20583.217792 eV Total energy + Delta-G solvation = -4084.080626 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 334.039 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.98053 -49.93953 -41.29724 -39.86277 -37.74235 -36.80813 -36.57402 -35.19934 -32.59492 -31.43788 -30.49797 -28.89796 -26.03705 -24.23195 -23.48796 -23.32607 -21.19533 -19.88475 -19.84412 -19.00719 -18.02485 -18.00653 -17.53918 -17.44402 -16.94756 -16.64882 -16.57068 -16.37657 -16.26354 -15.45010 -15.22332 -14.89134 -14.67673 -14.41245 -13.98343 -13.77771 -13.56131 -13.49411 -13.37680 -13.20320 -13.08180 -12.95698 -12.87577 -12.79297 -12.64416 -12.19411 -12.05062 -11.58038 -11.18561 -10.08511 -9.82799 -9.62843 -9.17996 -8.79796 -8.19883 -7.04545 -0.34127 -0.00937 0.14383 0.74745 0.94192 1.35004 1.38907 1.46054 1.60093 1.97336 2.08196 2.18225 2.29723 2.36102 2.54176 2.67168 2.96264 3.33092 3.35257 3.73019 3.81922 3.86373 3.96414 4.13472 4.45027 4.63483 4.75423 4.79182 4.95790 5.00204 5.08892 5.23005 5.37815 5.67065 5.83679 5.89998 6.07346 6.35447 6.41245 7.07585 7.27790 7.59982 Molecular weight = 334.04amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.004434 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.779492 B = 6312.760698 C = 7450.273071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C 0.329 3.671 3 C -0.298 4.298 4 C 0.312 3.688 5 N -0.544 5.544 6 C 0.365 3.635 7 C -0.324 4.324 8 H 0.106 0.894 9 C 0.057 3.943 10 N -0.734 5.734 11 Si 0.972 3.028 12 H -0.263 1.263 13 H -0.249 1.249 14 H -0.258 1.258 15 N -0.584 5.584 16 C 0.599 3.401 17 S -0.677 6.677 18 N -0.619 5.619 19 C 0.192 3.808 20 C -0.130 4.130 21 C 0.125 3.875 22 F -0.137 7.137 23 C -0.180 4.180 24 C 0.134 3.866 25 F -0.128 7.128 26 C -0.156 4.156 27 H 0.318 0.682 28 H 0.413 0.587 29 H 0.430 0.570 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.578 -1.644 -8.321 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.230 5.230 2 C 0.022 3.978 3 C -0.317 4.317 4 C 0.005 3.995 5 N -0.227 5.227 6 C 0.263 3.737 7 C -0.350 4.350 8 H 0.124 0.876 9 C -0.173 4.173 10 N -0.354 5.354 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.173 1.173 14 H -0.182 1.182 15 N -0.205 5.205 16 C 0.240 3.760 17 S -0.548 6.548 18 N -0.247 5.247 19 C 0.097 3.903 20 C -0.154 4.154 21 C 0.103 3.897 22 F -0.115 7.115 23 C -0.201 4.201 24 C 0.113 3.887 25 F -0.107 7.107 26 C -0.178 4.178 27 H 0.131 0.869 28 H 0.253 0.747 29 H 0.272 0.728 30 H 0.157 0.843 31 H 0.186 0.814 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.243 -0.790 -7.330 16.038 hybrid contribution 0.444 -1.059 -0.236 1.173 sum 14.687 -1.849 -7.565 16.624 Atomic orbital electron populations 1.81057 1.12721 1.19879 1.09372 1.24726 0.91415 0.90034 0.91646 1.12722 0.82745 1.49740 0.86474 1.25257 0.92368 0.90008 0.91820 1.81085 1.10373 1.20224 1.11000 1.16363 0.78528 0.87828 0.91000 1.20216 1.05645 1.15419 0.93756 0.87647 1.26845 0.95039 0.91290 1.04141 1.69230 1.15030 1.14351 1.36763 0.85217 0.80137 0.79784 0.75697 1.18751 1.17258 1.18185 1.41620 1.05967 1.24452 1.48483 1.21662 0.83837 0.89509 0.80988 1.93491 1.76812 1.20971 1.63515 1.41836 1.02499 1.20539 1.59817 1.16567 0.91771 0.86747 0.95168 1.21339 0.99242 0.91972 1.02798 1.16921 0.96202 0.78244 0.98304 1.91515 1.94061 1.34326 1.91627 1.21155 1.00367 0.97076 1.01459 1.16685 0.88037 0.92010 0.91962 1.91544 1.58088 1.93375 1.67647 1.20950 0.97286 1.01749 0.97769 0.86889 0.74659 0.72788 0.84337 0.81354 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.78 18.54 19.00 0.35 -25.42 16 2 C 0.33 14.79 14.09 88.33 1.24 16.03 16 3 C -0.30 -12.42 5.88 -20.09 -0.12 -12.54 16 4 C 0.31 13.17 14.82 88.33 1.31 14.48 16 5 N -0.54 -23.73 18.54 19.00 0.35 -23.38 16 6 C 0.36 14.04 4.93 38.92 0.19 14.23 16 7 C -0.32 -12.79 6.79 23.08 0.16 -12.63 16 8 H 0.11 4.50 7.37 -2.91 -0.02 4.47 16 9 C 0.06 1.98 5.25 85.57 0.45 2.43 16 10 N -0.73 -23.12 11.74 21.99 0.26 -22.86 16 11 Si 0.97 29.59 29.58 68.60 2.03 31.62 16 12 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 13 H -0.25 -6.77 7.11 99.48 0.71 -6.06 16 14 H -0.26 -8.34 7.11 99.48 0.71 -7.64 16 15 N -0.58 -18.68 3.13 -189.23 -0.59 -19.27 16 16 C 0.60 19.08 7.02 179.05 1.26 20.33 16 17 S -0.68 -27.56 24.23 -56.49 -1.37 -28.92 16 18 N -0.62 -14.28 5.32 -190.04 -1.01 -15.29 16 19 C 0.19 4.51 5.89 38.16 0.22 4.74 16 20 C -0.13 -3.61 7.85 22.44 0.18 -3.43 16 21 C 0.12 3.13 7.29 22.35 0.16 3.29 16 22 F -0.14 -3.74 17.27 44.97 0.78 -2.96 16 23 C -0.18 -3.58 10.00 22.38 0.22 -3.35 16 24 C 0.13 2.54 7.29 22.35 0.16 2.70 16 25 F -0.13 -2.37 17.27 44.97 0.78 -1.60 16 26 C -0.16 -2.87 9.95 22.44 0.22 -2.65 16 27 H 0.32 8.79 8.29 -92.71 -0.77 8.02 16 28 H 0.41 10.98 8.85 -92.71 -0.82 10.16 16 29 H 0.43 6.62 8.85 -92.71 -0.82 5.80 16 30 H 0.14 4.63 6.31 -4.05 -0.03 4.60 16 31 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -55.12 329.77 6.85 -48.27 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.38 Total: 16.20 kcal Atomic # 6 Polarization: 37.96 SS G_CDS: 5.66 Total: 43.63 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -0.64 Total: -106.23 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.55 Total: -4.56 kcal Atomic # 14 Polarization: 29.59 SS G_CDS: 2.03 Total: 31.62 kcal Atomic # 16 Polarization: -27.56 SS G_CDS: -1.37 Total: -28.92 kcal Total: -55.12 6.85 -48.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200677616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.529 kcal (2) G-P(sol) polarization free energy of solvation -55.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds