Wall clock time and date at job start Tue Mar 31 2020 19:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99670 * 2 1 4 4 H 1.48502 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47381 * 299.99857 * 3 2 1 6 6 H 1.48503 * 109.46923 * 60.00281 * 3 2 1 7 7 C 1.37871 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47328 * 179.97438 * 9 7 2 11 11 S 1.65598 * 120.00242 * 164.72467 * 10 9 7 12 12 O 1.42100 * 106.40477 * 178.53886 * 11 10 9 13 13 O 1.42102 * 106.40172 * 311.46465 * 11 10 9 14 14 C 1.76206 * 107.21677 * 64.99861 * 11 10 9 15 15 C 1.38269 * 119.94020 * 269.72364 * 14 11 10 16 16 C 1.38144 * 120.05196 * 179.76540 * 15 14 11 17 17 C 1.38745 * 119.94105 * 0.51308 * 16 15 14 18 18 O 1.35899 * 120.05445 * 179.76844 * 17 16 15 19 19 C 1.35730 * 117.99541 * 247.57683 * 18 17 16 20 20 C 1.39288 * 120.85216 * 5.81774 * 19 18 17 21 21 C 1.37972 * 119.08647 * 179.72949 * 20 19 18 22 22 N 1.31954 * 120.82809 * 0.55766 * 21 20 19 23 23 C 1.31963 * 121.86857 * 359.71352 * 22 21 20 24 24 C 1.37968 * 120.82598 * 0.02562 * 23 22 21 25 25 C 1.38753 * 119.88948 * 359.74341 * 17 16 15 26 26 C 1.38141 * 119.93841 * 0.02562 * 25 17 16 27 27 H 0.96997 * 119.99822 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46790 * 59.99726 * 9 7 2 29 29 H 1.08996 * 109.47089 * 300.00035 * 9 7 2 30 30 H 0.97006 * 120.00043 * 344.99875 * 10 9 7 31 31 H 1.07999 * 119.97453 * 0.02581 * 15 14 11 32 32 H 1.08003 * 120.02387 * 180.23840 * 16 15 14 33 33 H 1.08001 * 120.45526 * 359.97438 * 20 19 18 34 34 H 1.08010 * 119.58361 * 180.24806 * 21 20 19 35 35 H 1.08004 * 119.58823 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.45475 * 179.97438 * 24 23 22 37 37 H 1.07994 * 120.02925 * 179.97438 * 25 17 16 38 38 H 1.07994 * 119.96910 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 16 1.6897 -5.1410 0.3784 12 8 2.8249 -5.9872 0.2569 13 8 0.9310 -5.0253 1.5743 14 6 0.5615 -5.6383 -0.8804 15 6 -0.7890 -5.3770 -0.7392 16 6 -1.6750 -5.7616 -1.7269 17 6 -1.2100 -6.4198 -2.8563 18 8 -2.0802 -6.8033 -3.8272 19 6 -2.2816 -8.1326 -4.0134 20 6 -1.7095 -9.0689 -3.1554 21 6 -1.9429 -10.4108 -3.3752 22 7 -2.6875 -10.8105 -4.3886 23 6 -3.2418 -9.9546 -5.2261 24 6 -3.0606 -8.5956 -5.0712 25 6 0.1450 -6.6855 -2.9931 26 6 1.0274 -6.2946 -2.0047 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 3.1351 -3.4540 -0.2169 31 1 -1.1509 -4.8682 0.1420 32 1 -2.7292 -5.5538 -1.6179 33 1 -1.0950 -8.7486 -2.3270 34 1 -1.5065 -11.1435 -2.7124 35 1 -3.8443 -10.3224 -6.0436 36 1 -3.5168 -7.9004 -5.7604 37 1 0.5093 -7.1981 -3.8710 38 1 2.0821 -6.5007 -2.1108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201594655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:55 Heat of formation + Delta-G solvation = -38.278668 kcal Electronic energy + Delta-G solvation = -25256.918601 eV Core-core repulsion = 21385.317572 eV Total energy + Delta-G solvation = -3871.601029 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51935 -39.69265 -37.99891 -36.84584 -35.45911 -34.71599 -32.24730 -32.20636 -31.68462 -31.25562 -30.32267 -26.81835 -24.69754 -23.93448 -23.14990 -22.55219 -22.44685 -19.37893 -19.19971 -17.94543 -17.54289 -17.25604 -16.61984 -16.22481 -15.99072 -15.64797 -15.38822 -14.96801 -14.69631 -14.64993 -14.35765 -14.03418 -13.76330 -13.67287 -13.29598 -13.25683 -12.93623 -12.62470 -12.20748 -11.90357 -11.84205 -11.72861 -11.63597 -11.36254 -11.02244 -10.83928 -10.72527 -10.19652 -9.95732 -9.65996 -9.61171 -9.49625 -9.27844 -9.08543 -8.97881 -8.32120 -6.24253 -4.28979 0.35233 0.70834 0.86828 0.94934 1.07529 2.51206 3.20699 3.22320 3.28737 3.32075 3.43212 3.62875 4.09285 4.13316 4.28180 4.29535 4.43171 4.49560 4.60717 4.78250 4.81639 4.90760 5.08917 5.13187 5.29780 5.33550 5.37027 5.42067 5.65438 5.71372 5.71919 5.92632 6.00007 6.16554 6.33259 6.44958 7.04408 7.19249 7.24802 7.61486 7.69734 7.73648 8.09489 8.75243 9.36525 10.86137 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.002803 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.301180 B = 9985.817450 C =10990.225644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.244 3.756 10 N -1.101 6.101 11 S 2.691 3.309 12 O -0.977 6.977 13 O -0.958 6.958 14 C -0.669 4.669 15 C 0.006 3.994 16 C -0.138 4.138 17 C 0.126 3.874 18 O -0.251 6.251 19 C 0.165 3.835 20 C -0.248 4.248 21 C 0.136 3.864 22 N -0.507 5.507 23 C 0.131 3.869 24 C -0.199 4.199 25 C -0.163 4.163 26 C -0.003 4.003 27 H 0.266 0.734 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.412 0.588 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -16.514 -8.697 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.121 3.879 10 N -0.864 5.864 11 S 2.778 3.222 12 O -0.967 6.967 13 O -0.948 6.948 14 C -0.753 4.753 15 C -0.013 4.013 16 C -0.157 4.157 17 C 0.084 3.916 18 O -0.160 6.160 19 C 0.114 3.886 20 C -0.269 4.269 21 C -0.020 4.020 22 N -0.219 5.219 23 C -0.025 4.025 24 C -0.220 4.220 25 C -0.182 4.182 26 C -0.022 4.022 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.032 -17.630 -8.180 20.076 hybrid contribution 0.503 2.159 -0.700 2.324 sum -4.529 -15.472 -8.880 18.405 Atomic orbital electron populations 1.69940 1.06054 1.27335 1.49450 1.24974 0.94996 0.99509 0.94717 0.86352 0.79955 0.82840 0.77744 1.19574 1.20850 1.20745 1.21215 0.93523 0.89808 1.52407 0.91490 1.19127 0.87815 0.83574 0.97359 1.55441 1.19701 1.23633 1.87585 1.01929 0.73218 0.72962 0.74124 1.93535 1.49332 1.66641 1.87184 1.93578 1.72814 1.86327 1.42090 1.31435 1.11586 1.13771 1.18503 1.20972 0.90809 0.91694 0.97813 1.21257 1.01463 1.01449 0.91560 1.18919 0.88161 0.96904 0.87658 1.84364 1.59349 1.20701 1.51604 1.19493 0.93546 0.81887 0.93688 1.22429 1.06369 0.95059 1.03030 1.22633 0.92456 0.93390 0.93566 1.67740 1.10073 1.39414 1.04675 1.22675 0.94996 0.88148 0.96642 1.21562 1.03653 0.97684 0.99076 1.21471 0.92257 1.03874 1.00607 1.20795 1.00341 0.90905 0.90149 0.92457 0.95997 0.94223 0.75329 0.82772 0.83941 0.83938 0.82181 0.81806 0.83695 0.84542 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -13.74 9.27 -34.44 -0.32 -14.06 16 8 H 0.07 1.66 7.65 -52.49 -0.40 1.26 16 9 C 0.24 5.75 5.98 -5.19 -0.03 5.72 16 10 N -1.10 -20.95 5.99 -11.66 -0.07 -21.02 16 11 S 2.69 46.53 5.74 -107.50 -0.62 45.91 16 12 O -0.98 -17.52 17.28 -57.17 -0.99 -18.51 16 13 O -0.96 -19.25 16.74 -57.17 -0.96 -20.21 16 14 C -0.67 -10.10 5.95 -39.56 -0.24 -10.33 16 15 C 0.01 0.09 9.52 -39.60 -0.38 -0.29 16 16 C -0.14 -1.81 9.99 -39.43 -0.39 -2.20 16 17 C 0.13 1.61 4.77 -39.20 -0.19 1.42 16 18 O -0.25 -3.07 10.02 -3.09 -0.03 -3.11 16 19 C 0.17 1.78 6.59 -38.80 -0.26 1.53 16 20 C -0.25 -2.50 8.87 -39.29 -0.35 -2.85 16 21 C 0.14 1.27 11.17 -17.60 -0.20 1.07 16 22 N -0.51 -5.13 10.36 -13.33 -0.14 -5.27 16 23 C 0.13 1.10 11.17 -17.59 -0.20 0.90 16 24 C -0.20 -1.77 10.08 -39.29 -0.40 -2.17 16 25 C -0.16 -1.97 8.41 -39.43 -0.33 -2.30 16 26 C 0.00 -0.04 9.51 -39.61 -0.38 -0.41 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 1.01 7.75 -51.93 -0.40 0.60 16 30 H 0.41 7.13 8.54 -34.47 -0.29 6.84 16 31 H 0.15 2.21 7.61 -52.49 -0.40 1.81 16 32 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.14 1.41 6.34 -52.49 -0.33 1.08 16 34 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.15 1.68 7.61 -52.49 -0.40 1.28 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -32.58 349.24 -9.47 -42.05 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.90 Total: 5.96 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -3.74 Total: -22.44 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.53 Total: -50.26 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.98 Total: -41.83 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -0.62 Total: 45.91 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.58 -9.47 -42.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201594655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.766 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds