Wall clock time and date at job start Tue Mar 31 2020 19:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86803 * 119.99670 * 2 1 4 4 H 1.48502 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47381 * 299.99857 * 3 2 1 6 6 H 1.48503 * 109.46923 * 60.00281 * 3 2 1 7 7 C 1.37871 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47328 * 179.97438 * 9 7 2 11 11 S 1.65598 * 120.00242 * 164.72467 * 10 9 7 12 12 O 1.42100 * 106.40477 * 178.53886 * 11 10 9 13 13 O 1.42102 * 106.40172 * 311.46465 * 11 10 9 14 14 C 1.76206 * 107.21677 * 64.99861 * 11 10 9 15 15 C 1.38269 * 119.94020 * 269.72364 * 14 11 10 16 16 C 1.38144 * 120.05196 * 179.76540 * 15 14 11 17 17 C 1.38745 * 119.94105 * 0.51308 * 16 15 14 18 18 O 1.35899 * 120.05445 * 179.76844 * 17 16 15 19 19 C 1.35730 * 117.99541 * 247.57683 * 18 17 16 20 20 C 1.39288 * 120.85216 * 5.81774 * 19 18 17 21 21 C 1.37972 * 119.08647 * 179.72949 * 20 19 18 22 22 N 1.31954 * 120.82809 * 0.55766 * 21 20 19 23 23 C 1.31963 * 121.86857 * 359.71352 * 22 21 20 24 24 C 1.37968 * 120.82598 * 0.02562 * 23 22 21 25 25 C 1.38753 * 119.88948 * 359.74341 * 17 16 15 26 26 C 1.38141 * 119.93841 * 0.02562 * 25 17 16 27 27 H 0.96997 * 119.99822 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46790 * 59.99726 * 9 7 2 29 29 H 1.08996 * 109.47089 * 300.00035 * 9 7 2 30 30 H 0.97006 * 120.00043 * 344.99875 * 10 9 7 31 31 H 1.07999 * 119.97453 * 0.02581 * 15 14 11 32 32 H 1.08003 * 120.02387 * 180.23840 * 16 15 14 33 33 H 1.08001 * 120.45526 * 359.97438 * 20 19 18 34 34 H 1.08010 * 119.58361 * 180.24806 * 21 20 19 35 35 H 1.08004 * 119.58823 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.45475 * 179.97438 * 24 23 22 37 37 H 1.07994 * 120.02925 * 179.97438 * 25 17 16 38 38 H 1.07994 * 119.96910 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 16 1.6897 -5.1410 0.3784 12 8 2.8249 -5.9872 0.2569 13 8 0.9310 -5.0253 1.5743 14 6 0.5615 -5.6383 -0.8804 15 6 -0.7890 -5.3770 -0.7392 16 6 -1.6750 -5.7616 -1.7269 17 6 -1.2100 -6.4198 -2.8563 18 8 -2.0802 -6.8033 -3.8272 19 6 -2.2816 -8.1326 -4.0134 20 6 -1.7095 -9.0689 -3.1554 21 6 -1.9429 -10.4108 -3.3752 22 7 -2.6875 -10.8105 -4.3886 23 6 -3.2418 -9.9546 -5.2261 24 6 -3.0606 -8.5956 -5.0712 25 6 0.1450 -6.6855 -2.9931 26 6 1.0274 -6.2946 -2.0047 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 3.1351 -3.4540 -0.2169 31 1 -1.1509 -4.8682 0.1420 32 1 -2.7292 -5.5538 -1.6179 33 1 -1.0950 -8.7486 -2.3270 34 1 -1.5065 -11.1435 -2.7124 35 1 -3.8443 -10.3224 -6.0436 36 1 -3.5168 -7.9004 -5.7604 37 1 0.5093 -7.1981 -3.8710 38 1 2.0821 -6.5007 -2.1108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201594655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:54 Heat of formation + Delta-G solvation = -60.983110 kcal Electronic energy + Delta-G solvation = -25257.903139 eV Core-core repulsion = 21385.317572 eV Total energy + Delta-G solvation = -3872.585567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38077 -40.52153 -38.96433 -38.33288 -36.95984 -36.48689 -34.13682 -33.04272 -32.49988 -32.17849 -31.31002 -28.73923 -25.59566 -24.72261 -24.50850 -24.06754 -23.36909 -20.67154 -20.17734 -19.36544 -18.86763 -18.32508 -17.74528 -17.68356 -17.02036 -16.93096 -16.42878 -16.31335 -15.86854 -15.57803 -15.37524 -15.16550 -14.75441 -14.71549 -14.63423 -14.42500 -14.14230 -14.08038 -13.82336 -13.58586 -13.24235 -13.14386 -12.79621 -12.59490 -12.51879 -12.38029 -12.14182 -12.03955 -11.40487 -10.86688 -10.68780 -10.58001 -10.35200 -10.26922 -10.13666 -9.98244 -8.25506 -6.36934 -0.77302 -0.47193 0.00414 0.06459 0.17166 1.44028 1.45753 1.56251 1.58087 2.07337 2.29109 2.42429 2.73457 2.75297 3.09973 3.25803 3.48763 3.52633 3.63484 3.65718 3.83272 4.02011 4.10607 4.14674 4.19961 4.45945 4.58921 4.61507 4.70677 4.75408 4.79511 4.84877 4.91982 4.99515 5.27126 5.30602 5.33625 5.57093 5.74335 5.96976 6.15030 6.30456 6.77445 6.93373 7.32815 8.85661 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.002803 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.301180 B = 9985.817450 C =10990.225644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.548 4.548 8 H 0.075 0.925 9 C 0.257 3.743 10 N -1.102 6.102 11 S 2.710 3.290 12 O -0.981 6.981 13 O -0.991 6.991 14 C -0.679 4.679 15 C -0.009 4.009 16 C -0.143 4.143 17 C 0.131 3.869 18 O -0.258 6.258 19 C 0.144 3.856 20 C -0.254 4.254 21 C 0.132 3.868 22 N -0.525 5.525 23 C 0.133 3.867 24 C -0.198 4.198 25 C -0.156 4.156 26 C -0.003 4.003 27 H 0.268 0.732 28 H 0.013 0.987 29 H 0.015 0.985 30 H 0.420 0.580 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.181 0.819 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -17.306 -10.434 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.587 4.587 8 H 0.093 0.907 9 C 0.132 3.868 10 N -0.863 5.863 11 S 2.801 3.199 12 O -0.971 6.971 13 O -0.981 6.981 14 C -0.767 4.767 15 C -0.029 4.029 16 C -0.162 4.162 17 C 0.088 3.912 18 O -0.168 6.168 19 C 0.093 3.907 20 C -0.275 4.275 21 C -0.024 4.024 22 N -0.238 5.238 23 C -0.023 4.023 24 C -0.218 4.218 25 C -0.175 4.175 26 C -0.023 4.023 27 H 0.077 0.923 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.255 0.745 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.198 0.802 35 H 0.213 0.787 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.704 -18.429 -9.891 21.438 hybrid contribution 0.323 2.244 -0.263 2.283 sum -4.381 -16.184 -10.154 19.602 Atomic orbital electron populations 1.70051 1.07558 1.28304 1.50469 1.25860 0.95822 1.03111 0.94352 0.85317 0.79063 0.78459 0.77671 1.18506 1.20359 1.20656 1.21652 0.94198 0.90930 1.51960 0.90714 1.18703 0.88009 0.84354 0.95693 1.55258 1.19674 1.23523 1.87882 1.01085 0.72947 0.72077 0.73805 1.93521 1.49989 1.66161 1.87425 1.93532 1.73403 1.86552 1.44638 1.30964 1.11072 1.15842 1.18789 1.21010 0.91076 0.92413 0.98353 1.21405 1.02066 1.01313 0.91397 1.19029 0.88699 0.96066 0.87386 1.84333 1.59418 1.21792 1.51298 1.19777 0.94826 0.81212 0.94876 1.22468 1.06622 0.95388 1.03025 1.22974 0.92191 0.93544 0.93704 1.67805 1.10567 1.40166 1.05226 1.23222 0.94438 0.87780 0.96835 1.21844 1.02949 0.98331 0.98677 1.21697 0.91778 1.03127 1.00898 1.21053 1.01543 0.90156 0.89503 0.92286 0.96875 0.96704 0.74459 0.83473 0.82412 0.84135 0.80212 0.78674 0.81916 0.82123 0.81566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.09 13.29 21.45 0.28 -51.81 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -28.60 9.27 25.60 0.24 -28.36 16 8 H 0.07 3.68 7.65 -2.91 -0.02 3.66 16 9 C 0.26 12.41 5.98 85.63 0.51 12.92 16 10 N -1.10 -42.48 5.99 -190.79 -1.14 -43.62 16 11 S 2.71 94.92 5.74 -56.49 -0.32 94.59 16 12 O -0.98 -34.68 17.28 -128.00 -2.21 -36.89 16 13 O -0.99 -41.15 16.74 -128.00 -2.14 -43.29 16 14 C -0.68 -20.49 5.95 22.28 0.13 -20.35 16 15 C -0.01 -0.27 9.52 22.25 0.21 -0.06 16 16 C -0.14 -3.70 9.99 22.37 0.22 -3.47 16 17 C 0.13 3.18 4.77 22.51 0.11 3.29 16 18 O -0.26 -5.96 10.02 -33.96 -0.34 -6.30 16 19 C 0.14 2.86 6.59 22.78 0.15 3.01 16 20 C -0.25 -4.76 8.87 22.46 0.20 -4.56 16 21 C 0.13 2.23 11.17 84.61 0.95 3.18 16 22 N -0.53 -9.54 10.36 -196.08 -2.03 -11.57 16 23 C 0.13 1.88 11.17 84.61 0.95 2.83 16 24 C -0.20 -3.07 10.08 22.46 0.23 -2.85 16 25 C -0.16 -3.49 8.41 22.37 0.19 -3.31 16 26 C 0.00 -0.08 9.51 22.25 0.21 0.13 16 27 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 28 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.02 0.79 7.75 -2.39 -0.02 0.77 16 30 H 0.42 14.51 8.54 -96.74 -0.83 13.68 16 31 H 0.15 4.48 7.61 -2.91 -0.02 4.46 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.14 2.63 6.34 -2.91 -0.02 2.61 16 34 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.17 3.46 7.61 -2.91 -0.02 3.44 16 Total: -1.00 -69.04 349.24 -0.84 -69.88 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.28 Total: 22.11 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 4.75 Total: -36.68 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -2.89 Total: -107.00 kcal Atomic # 8 Polarization: -81.78 SS G_CDS: -4.69 Total: -86.48 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 94.92 SS G_CDS: -0.32 Total: 94.59 kcal Total: -69.04 -0.84 -69.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201594655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.902 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds