Wall clock time and date at job start Tue Mar 31 2020 18:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 N 1.31840 * 119.65723 * 89.99733 * 13 10 9 15 15 C 1.31850 * 121.78184 * 179.97438 * 14 13 10 16 16 C 1.38253 * 120.88517 * 0.02562 * 15 14 13 17 17 C 1.38533 * 119.22491 * 359.97438 * 16 15 14 18 18 C 1.38709 * 119.66009 * 269.72718 * 13 10 9 19 19 O 1.35910 * 120.47159 * 0.02562 * 18 13 10 20 20 C 1.42900 * 117.00151 * 179.97438 * 19 18 13 21 21 C 1.50696 * 109.47316 * 179.97438 * 20 19 18 22 22 C 1.38239 * 120.00032 * 269.72280 * 21 20 19 23 23 C 1.38233 * 119.99961 * 179.76524 * 22 21 20 24 24 C 1.38243 * 119.99916 * 0.51180 * 23 22 21 25 25 C 1.38236 * 119.99738 * 359.74408 * 24 23 22 26 26 C 1.38232 * 120.00129 * 359.97438 * 25 24 23 27 27 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 29 29 H 1.08004 * 119.55980 * 180.02562 * 15 14 13 30 30 H 1.08003 * 120.38993 * 180.02562 * 16 15 14 31 31 H 1.08000 * 120.81869 * 179.97438 * 17 16 15 32 32 H 1.09001 * 109.47280 * 299.99772 * 20 19 18 33 33 H 1.09002 * 109.47192 * 59.99462 * 20 19 18 34 34 H 1.08001 * 119.99593 * 0.02562 * 22 21 20 35 35 H 1.07994 * 120.00209 * 180.23275 * 23 22 21 36 36 H 1.08004 * 119.99913 * 179.72211 * 24 23 22 37 37 H 1.08005 * 119.99644 * 179.97438 * 25 24 23 38 38 H 1.08005 * 119.99710 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 7 2.4546 -4.4600 2.5857 15 6 3.0717 -4.5486 3.7476 16 6 4.3564 -4.0637 3.9076 17 6 4.9979 -3.4785 2.8281 18 6 4.3194 -3.4067 1.6154 19 8 4.9099 -2.8457 0.5273 20 6 6.2397 -2.3499 0.6943 21 6 6.7265 -1.7692 -0.6083 22 6 7.3929 -2.5709 -1.5162 23 6 7.8352 -2.0394 -2.7132 24 6 7.6205 -0.7037 -2.9977 25 6 6.9588 0.0991 -2.0875 26 6 6.5113 -0.4338 -0.8930 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 0.0005 29 1 2.5667 -5.0062 4.5855 30 1 4.8545 -4.1408 4.8628 31 1 6.0012 -3.0908 2.9244 32 1 6.2452 -1.5761 1.4620 33 1 6.8965 -3.1658 0.9961 34 1 7.5642 -3.6134 -1.2921 35 1 8.3525 -2.6665 -3.4241 36 1 7.9700 -0.2874 -3.9310 37 1 6.7914 1.1428 -2.3096 38 1 5.9947 0.1937 -0.1817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201895580.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:58 Heat of formation + Delta-G solvation = -40.033141 kcal Electronic energy + Delta-G solvation = -26803.791285 eV Core-core repulsion = 22932.114176 eV Total energy + Delta-G solvation = -3871.677108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.42105 -39.16655 -37.79001 -35.79509 -34.56606 -34.51580 -32.31252 -32.06330 -30.91026 -30.82848 -30.00314 -26.58847 -24.47925 -23.81067 -22.89074 -22.53123 -21.16032 -18.77734 -18.11981 -17.98520 -17.25555 -16.95745 -16.37139 -16.21708 -15.85942 -15.10837 -14.75624 -14.58204 -14.50319 -14.20196 -14.14521 -13.45272 -13.39103 -13.25470 -13.21663 -12.74829 -12.46658 -11.98545 -11.89139 -11.35882 -11.31580 -11.03959 -10.94485 -10.88877 -10.82091 -10.67895 -10.49372 -10.45995 -10.21546 -9.94551 -9.72025 -9.22647 -8.82126 -8.76204 -8.37089 -8.21980 -6.45377 -3.85102 0.99280 1.27290 1.47147 1.50262 1.68637 3.14521 3.19222 3.22435 3.23128 3.78355 4.01887 4.08760 4.50380 4.62145 4.63747 4.77778 4.84536 4.89337 4.94412 5.05328 5.13668 5.17579 5.19933 5.25101 5.39101 5.43113 5.56829 5.68822 5.81704 5.99341 6.05453 6.10446 6.29094 6.49573 6.56424 6.56883 6.63286 7.04420 7.13368 7.30413 7.51441 8.09527 8.71883 8.83523 9.27614 10.70802 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.006407 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.081174 B = 4369.469138 C = 5911.887403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.029 3.971 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.266 4.266 8 H 0.109 0.891 9 N -0.939 5.939 10 S 2.613 3.387 11 O -0.988 6.988 12 O -0.947 6.947 13 C -0.452 4.452 14 N -0.360 5.360 15 C 0.029 3.971 16 C -0.099 4.099 17 C -0.191 4.191 18 C 0.161 3.839 19 O -0.264 6.264 20 C 0.094 3.906 21 C -0.090 4.090 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.088 4.088 27 H 0.273 0.727 28 H 0.411 0.589 29 H 0.159 0.841 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.443 -0.713 3.464 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.179 4.179 3 Si 0.745 3.255 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.406 4.406 8 H 0.126 0.874 9 N -0.692 5.692 10 S 2.698 3.302 11 O -0.977 6.977 12 O -0.936 6.936 13 C -0.665 4.665 14 N -0.069 5.069 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.218 4.218 18 C 0.110 3.890 19 O -0.174 6.174 20 C 0.019 3.981 21 C -0.090 4.090 22 C -0.107 4.107 23 C -0.144 4.144 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.106 4.106 27 H 0.083 0.917 28 H 0.247 0.753 29 H 0.177 0.823 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.688 -1.701 2.569 15.008 hybrid contribution 1.190 1.496 1.325 2.326 sum 15.878 -0.205 3.894 16.350 Atomic orbital electron populations 1.69713 1.05946 1.28100 1.47937 1.25265 0.95633 0.99398 0.97589 0.85990 0.79757 0.81709 0.78055 1.18968 1.20325 1.20700 1.19524 0.92472 0.82916 1.45733 0.87356 1.51897 1.17108 1.19459 1.80714 1.06905 0.73327 0.74008 0.75931 1.93418 1.59320 1.57507 1.87416 1.93539 1.61050 1.86765 1.52257 1.34715 1.02503 1.07541 1.21736 1.67822 1.33777 1.07482 0.97859 1.22907 0.93085 1.01046 0.96108 1.22081 0.95845 0.95244 0.98705 1.21735 1.01618 1.05274 0.93222 1.19715 0.92361 0.90023 0.86900 1.86584 1.28787 1.70922 1.31144 1.21707 0.82331 0.98112 0.95904 1.19347 0.99772 0.94067 0.95797 1.21024 0.97074 0.99167 0.93483 1.21085 1.00963 0.95493 0.96860 1.21185 0.98553 0.94097 0.99052 1.21130 0.98760 1.00150 0.94090 1.21147 0.97280 0.94775 0.97431 0.91656 0.75341 0.82330 0.84601 0.84199 0.90937 0.91138 0.85966 0.85971 0.86088 0.85858 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.61 13.06 55.49 0.72 -22.88 16 2 C 0.03 0.74 5.50 -17.43 -0.10 0.65 16 3 Si 0.92 19.64 29.55 -169.99 -5.02 14.62 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.27 -6.92 9.63 -15.06 -0.15 -7.06 16 8 H 0.11 2.73 6.92 -52.49 -0.36 2.37 16 9 N -0.94 -24.12 5.75 31.50 0.18 -23.94 16 10 S 2.61 63.97 5.69 -107.50 -0.61 63.36 16 11 O -0.99 -25.95 17.85 -57.17 -1.02 -26.97 16 12 O -0.95 -24.31 15.70 -66.16 -1.04 -25.35 16 13 C -0.45 -9.88 6.79 -17.37 -0.12 -10.00 16 14 N -0.36 -7.47 10.11 -12.33 -0.12 -7.60 16 15 C 0.03 0.47 11.18 -17.54 -0.20 0.27 16 16 C -0.10 -1.32 10.11 -39.47 -0.40 -1.72 16 17 C -0.19 -2.83 9.14 -39.14 -0.36 -3.18 16 18 C 0.16 3.08 6.65 -39.07 -0.26 2.82 16 19 O -0.26 -5.10 7.07 -41.27 -0.29 -5.39 16 20 C 0.09 1.35 4.89 36.00 0.18 1.52 16 21 C -0.09 -1.33 5.51 -104.63 -0.58 -1.91 16 22 C -0.09 -1.21 9.70 -39.58 -0.38 -1.60 16 23 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.11 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 26 C -0.09 -1.30 9.70 -39.59 -0.38 -1.69 16 27 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.41 10.70 8.02 -34.47 -0.28 10.43 16 29 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.14 1.54 6.45 -52.49 -0.34 1.20 16 32 H 0.07 0.88 7.63 -51.93 -0.40 0.49 16 33 H 0.07 0.80 7.65 -51.93 -0.40 0.41 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -34.13 346.42 -9.78 -43.91 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -3.87 Total: 12.61 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -3.93 Total: -27.59 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.78 Total: -54.42 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -2.35 Total: -57.71 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 63.97 SS G_CDS: -0.61 Total: 63.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.13 -9.78 -43.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201895580.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.879 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds